Granulosa-Lutein Cell Sirtuin Gene Expression Profiles Differ Between Normal Donors and Infertile Women
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Number 9 September 2019
VolumeVolume 23 1 -- NumberNumber 91 MaySeptember - September 2019 1997 Atlas of Genetics and Cytogenetics in Oncology and Haematology OPEN ACCESS JOURNAL INIST-CNRS Scope The Atlas of Genetics and Cytogenetics in Oncology and Haematology is a peer reviewed on-line journal in open access, devoted to genes, cytogenetics, and clinical entities in cancer, and cancer-prone diseases. It is made for and by: clinicians and researchers in cytogenetics, molecular biology, oncology, haematology, and pathology. One main scope of the Atlas is to conjugate the scientific information provided by cytogenetics/molecular genetics to the clinical setting (diagnostics, prognostics and therapeutic design), another is to provide an encyclopedic knowledge in cancer genetics. The Atlas deals with cancer research and genomics. It is at the crossroads of research, virtual medical university (university and post-university e-learning), and telemedicine. It contributes to "meta-medicine", this mediation, using information technology, between the increasing amount of knowledge and the individual, having to use the information. Towards a personalized medicine of cancer. It presents structured review articles ("cards") on: 1- Genes, 2- Leukemias, 3- Solid tumors, 4- Cancer-prone diseases, and also 5- "Deep insights": more traditional review articles on the above subjects and on surrounding topics. It also present 6- Case reports in hematology and 7- Educational items in the various related topics for students in Medicine and in Sciences. The Atlas of Genetics and Cytogenetics -
A NOVEL FORMULATION of HERBS with POTENT ANTI-AGEING ACTIVITY Mohit M
European Journal of Bioinformatics, Vol. 2:1-5, 2014 A NOVEL FORMULATION OF HERBS WITH POTENT ANTI-AGEING ACTIVITY Mohit M. Jaina, Nirmala Kumaria, Geeta Raib* aNEISS Wellness India Limited, Mumbai, India. bDepartment of Molecular and Human Genetics, Banaras Hindu University, Varanasi 221005, India. ABSTRACT Ageing is characterized by a progressive deterioration of physiological functions and metabolic processes. Sirtuin (SIRT1) is a NAD+-dependent protein deacetylase which is a human ortholog of the yeast SIR2 protein. The activation of SIRr2 affects wide variety of cellular processes ranging from metabolism, cell cycle, growth and differentiation, inflammation, senescence, apoptosis, stress response and ageing. There are natural anti- ageing drugs in the market like Resveraterol but some studies suggest that due to its interaction with contraceptive pills it should not be consumed by women taking them. Although, a diet rich in antioxidants seems to offer hope in delaying the onset of unhealthy disorders that accompany ageing, however no clinical treatment using natural herbs has yet been developed and natural anti-aging drugs are still unavailable. In the present study, we evaluated the binding of active ligands present in real grass with the SIRT1 and SIRT5 receptor and compared their binding energy and affinity with other reference anti-ageing drugs present in the market. A high throughput screening comprising of molecular docking, absorption, distribution, metabolism, excretion and toxicity predictions, logP values and percentage of human oral absorption value led to the identification of three potential compounds present in ‘Live Green Real Grass’ which could be considered for anti–ageing activity with better binding affinities than the reference drugs used. -
Sirt7 Promotes Adipogenesis in the Mouse by Inhibiting Autocatalytic
Sirt7 promotes adipogenesis in the mouse by inhibiting PNAS PLUS autocatalytic activation of Sirt1 Jian Fanga,1, Alessandro Iannia,1, Christian Smolkaa,b, Olesya Vakhrushevaa,c, Hendrik Noltea,d, Marcus Krügera,d, Astrid Wietelmanna, Nicolas G. Simonete, Juan M. Adrian-Segarraa, Alejandro Vaqueroe, Thomas Brauna,2, and Eva Bobera,2 aDepartment of Cardiac Development and Remodeling, Max Planck Institute for Heart and Lung Research, D-61231 Bad Nauheim, Germany; bMedizin III Kardiologie und Angiologie, Universitätsklinikum Freiburg, D-79106 Freiburg, Germany; cDepartment of Medicine, Hematology/Oncology, Goethe University, D-60595 Frankfurt am Main, Germany; dInstitute for Genetics, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), D-50931 Köln, Germany; and eCancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute (IDIBELL), 08908 L’Hospitalet de Llobregat, Barcelona, Catalonia, Spain Edited by C. Ronald Kahn, Section of Integrative Physiology, Joslin Diabetes Center, Harvard Medical School, Boston, MA, and approved August 23, 2017 (received for review April 26, 2017) Sirtuins (Sirt1–Sirt7) are NAD+-dependent protein deacetylases/ adipogenesis and accumulation of lipids in 3T3-L1 adipocytes by ADP ribosyltransferases, which play decisive roles in chromatin deacetylation of FOXO1, which represses PPARγ (10). The role of silencing, cell cycle regulation, cellular differentiation, and metab- Sirt6 in the regulation of adipogenic differentiation is less clear olism. Different sirtuins control similar cellular processes, suggest- although it is known that Sirt6 knockout (KO) mice suffer from ing a coordinated mode of action but information about potential reduced adipose tissue stores, while Sirt6 overexpressing mice cross-regulatory interactions within the sirtuin family is still lim- are protected against high-fat diet-induced obesity (11, 12). -
The Controversial Role of Sirtuins in Tumorigenesis — SIRT7 Joins The
npg 10 Cell Research (2013) 23:10-12. npg © 2013 IBCB, SIBS, CAS All rights reserved 1001-0602/13 $ 32.00 RESEARCH HIGHLIGHT www.nature.com/cr The controversial role of Sirtuins in tumorigenesis – SIRT7 joins the debate Ling Li1, Ravi Bhatia1 1Division of Hematopoietic Stem cell and Leukemia Research, City of Hope National Medical Center, Duarte, CA 91010, USA Cell Research (2013) 23:10-12. doi:10.1038/cr.2012.112; published online 31 July 2012 Sirtuins are NAD-dependent function of SIRT7 is the least well un- first deacetylase with selectivity for the deacetylases that are conserved derstood so far. SIRT7 lacks conserved H3K18Ac modification. Low levels of from yeast to mammals. A new report amino acids within the catalytic domain H3K18Ac were previously shown to sheds light on the function of SIRT7, associated with deacetylase activity, and predict a higher risk of prostate cancer the least understood member of the although suggested to deacetylate the recurrence, and poor prognosis in lung, Sirtuin family by identifying its locus- tumor suppressor p53 (Figure 1) [3], has kidney and pancreatic cancers [8]. Us- specific H3K18 deacetylase activity, generally been considered to have weak ing chromatin immunoprecipitation and linking it to maintenance of cellu- or undetectable deacetylase activity [4, sequencing to study the genome-wide lar transformation in malignancies. 5]. There is evidence that SIRT7 can me- localization of SIRT7, Barber et al. Sirtuins are NAD-dependent deacety- diate protein interactions regulating the found that SIRT7 is enriched at promot- lases that have been linked to longev- RNA Pol I machinery [6]. -
Cps1) for Studying This Enzyme’S
PhD THESIS USING RECOMBINANT HUMAN CARBAMOYL PHOSPHATE SYNTHETASE 1 (CPS1) FOR STUDYING THIS ENZYME’S FUNCTION, REGULATION, PATHOLOGY AND STRUCTURE Author: CARMEN DÍEZ FERNÁNDEZ Directors: Drs. Vicente Rubio Zamora y Javier Cervera Miralles May 2015 INSTITUTO DE BIOMEDICINA DE VALENCIA (IBV) Vicente Rubio Zamora, Doctor en Medicina, Profesor de Investigación del Consejo Superior de Investigaciones Científicas (CSIC) y Profesor Titular de Bioquímica (en Excedencia) de la Universidad de Valencia, y Javier Cervera Miralles, Doctor en Biología, Investigador jubilado del Centro de Investigación Príncipe Felipe de Valencia, de la Fundación Valenciana de Investigaciones Biomédicas de Valencia, CERTIFICAN: Que Dª, Carmen Díez Fernández, Ingeniera Agrónoma por la Universidad Politécnica de Valencia, con DNI 29208872E, ha realizado bajo su dirección el trabajo de Tesis Doctoral que lleva por título (en lengua inglesa): “Using recombinant human carbamoyl phosphate synthetase 1 (CPS1) for studying this enzyme’s function, regulation, pathology and structure”. Que están de acuerdo con los contenidos del trabajo, realizado en la modalidad de acopio de publicaciones. Que entienden que el trabajo reúne los requisitos para ser susceptible de defensa ante el Tribunal apropiado, por incluir dos publicaciones ya aparecidas y una sometida a evaluación, en revistas internacionales de amplia difusión y en las que la doctoranda es primera autora; así como porque el contenido de las otras secciones de dicho trabajo de tesis reflejan adecuadamente el estado del conocimiento y discuten apropiadamente el contenido y las implicaciones del trabajo realizado; porque las conclusiones recogen un avance suficiente en el campo objeto de estudio como para hacer a la candidata merecedora del doctorado; y, finalmente, porque les consta que ninguno de los coautores de dichas publicaciones, todos ellos ya doctores, han utilizado ni utilizarán las mismas para confeccionar otro trabajo de tesis doctoral. -
Sirtuin 7 Promotes Non‑Small Cell Lung Cancer Progression by Facilitating G1/S Phase and Epithelial‑Mesenchymal Transition and Activating AKT and ERK1/2 Signaling
ONCOLOGY REPORTS 44: 959-972, 2020 Sirtuin 7 promotes non‑small cell lung cancer progression by facilitating G1/S phase and epithelial‑mesenchymal transition and activating AKT and ERK1/2 signaling YINGYING ZHAO1*, XIA YE1*, RUIFANG CHEN1, QIAN GAO1, DAGUO ZHAO2, CHUNHUA LING2, YULAN QIAN3, CHUN XU4, MIN TAO1 and YUFENG XIE1 Departments of 1Oncology, 2Respiratory Medicine, 3Pharmacy and 4Cardio-Thoracic Surgery, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215006, P.R. China Received November 26, 2019; Accepted May 29, 2020 DOI: 10.3892/or.2020.7672 Abstract. Increasing evidence has indicated the roles of (EMT) process of A549 NSCLC cells was facilitated by SIRT7 sirtuin 7 (SIRT7) in numerous human cancers. However, the overexpression, as evidenced by E-cadherin epithelial marker effects and the clinical significance of SIRT7 in human lung downregulation and mesenchymal markers (N-cadherin, cancer is largely unknown. The present research demonstrated vimentin, Snail and Slug) upregulation. In addition, SIRT7 that SIRT7 was increased in human lung cancer tumor tissues. knockdown in H292 NSCLC cells exhibited the opposite SIRT7 upregulation was associated with clinicopathological regulatory effects. Moreover, inhibition of AKT signaling characteristics of lung cancer malignancy including positive abated the promoting effects of SIRT7 in NSCLC cell prolif- lymph node metastasis, high pathologic stage and large tumor eration and EMT progression. The present data indicated that size. SIRT7 was also upregulated in human non-small cell lung SIRT7 accelerated human NSCLC cell growth and metastasis cancer (NSCLC) cell lines. Furthermore SIRT7-overexpressed possibly by promotion of G1 to S-phase transition and EMT A549 (A549-SIRT7) and SIRT7-knocked down H292 through modulation of the expression of G1-phase checkpoint (H292-shSIRT7) human NSCLC cell lines were established. -
Cloning, Chromosomal Characterization and FISH Mapping of the NAD+-Dependent Histone Deacetylase Gene Sirtuin 5 in the Mouse
INTERNATIONAL JOURNAL OF ONCOLOGY 43: 237-245, 2013 Cloning, chromosomal characterization and FISH mapping of the NAD+-dependent histone deacetylase gene sirtuin 5 in the mouse SUSANNE VOELTER-MAHLKNECHT1 and ULRICH MAHLKNECHT2 1Institute of Occupational and Social Medicine and Health Services Research, University of Tuebingen, D-72074 Tuebingen; 2Department of Hematology/Oncology, St. Lukas Klinik Solingen, D-42697 Solingen, Germany Received February 24, 2013; Accepted March 22, 2013 DOI: 10.3892/ijo.2013.1939 Abstract. Sirtuin 5 (SIRT5) is a nicotinamide adenine multiple organisms ranging from bacteria to humans. The dinucleotide (NAD+)-dependent deacetylase, belonging to the sirtuin domain is composed of two distinct motifs binding silent information regulator 2 (Sir2) family of sirtuin histone NAD+ and the acetyl-lysine substrate, respectively (3,4). deacetylases (sirtuins). The yeast Sir2 protein and its mamma- They catalyse the deacetylation of acetylated lysine residues lian derivatives are important in epigenetic gene silencing, of histone substrates and act on non-histone substrates, e.g., DNA repair and recombination, cell cycle, microtubule orga- several transcription factors such as the p53 tumor suppres sor nization and in the regulation of aging. In mammals, 7 sirtuin protein (5), the cytoskeletal protein α-tubulin (6) or the acetyl- isoforms have been identified to date of which three (SIRT3, CoA synthetase (7). Besides the deacetylation reaction, some SIRT4 and SIRT5) are localized in the mitochondria, which sirtuins show ADP ribosyltransferase activity (8,9). serve as the center of energy management and the initiation A dysregulation of the tightly regulated equilibrium of of cellular apoptosis. In the study presented herein, we report acetylation and deacetylation plays an important role both, the genomic organization and chromosomal localization of in the pathogenesis and in the suppression of cancer (10). -
Sirtuin 5 Levels Are Limiting in Preserving Cardiac Function and Suppressing Fibrosis In
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.15.448619; this version posted June 16, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Sirtuin 5 levels are limiting in preserving cardiac function and suppressing fibrosis in response to pressure overload Angela H. Guo1,2, Rachael K. Baliira3,4, Mary E. Skinner1, Surinder Kumar1, Anthony Andren5, Li Zhang5, Shaday Michan6, Norma J. Davis1,7, Merissa W. Maccani1,8, Sharlene M. Day9, David A. Sinclair10, Costas A. Lyssiotis5,10,11, Adam B. Stein11, David B. Lombard1, 12, 13* 1Department of Pathology, University of Michigan, Ann Arbor, Michigan 48109 2Molecular and Cellular Pathology Graduate Program, University of Michigan, Ann Arbor, Michigan 48109 3Cancer Biology Graduate Program, University of Michigan, Ann Arbor, Michigan 48109 4Department of Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109 5Department of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan 48109 6Independent Researcher, San Diego, CA 92122 7Department of Biomedical Sciences, Duke University School of Medicine, Durham, NC, 27710 8Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia PA 19107 9Department of Internal Medicine, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA 19104 10Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115 11Department of Internal Medicine, University of Michigan, Ann Arbor, MI 48109 USA 12Rogel Cancer Center, University of Michigan, Ann Arbor, MI 48109 USA 13Institute of Gerontology, University of Michigan, Ann Arbor, MI 48109 USA 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.15.448619; this version posted June 16, 2021. -
Deglutarylation of GCDH by SIRT5 Controls Lysine Metabolism in Mice
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.28.176677; this version posted June 30, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Deglutarylation of GCDH by SIRT5 controls lysine metabolism in mice Dhaval P. Bhatt1†, C. Allie Mills1†, Kristin A. Anderson1,2,3, Bárbara J. Henriques4,5, Tânia G. Lucas4,5, Sara Francisco4,5, Juan Liu3, Olga R. Ilkayeva1, Alexander E. Adams1, Shreyas R. Kulkarni1, Donald S. Backos6, Paul A. Grimsrud1, Cláudio M. Gomes4,5, Matthew D. Hirschey1,2,3* 1Duke Molecular Physiology Institute, Duke University School of Medicine, Durham, NC. 2Sarah W. Stedman Nutrition and Metabolism Center, Duke University School of Medicine, Durham, NC 3Departments of Medicine and Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC 4 Biosystems and Integrative Sciences Institute, Faculdade de Ciências, Universidade de Lisboa, 1749- 016 Lisboa, Portugal 5 Departmento de Química e Bioquimica, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal 6 Computational Chemistry and Biology Core Facility, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA †These authors contributed equally to this work *Corresponding author: [email protected] Running Title: SIRT5 deacylates GCDH Keywords: Sirtuin, post-translational modification (PTM), liver, amino acid, cell metabolism, Sirtuin 5 (SIRT5), glutarylation, glutaryl-CoA dehydrogenase (GCDH), lysine metabolism bioRxiv preprint doi: https://doi.org/10.1101/2020.06.28.176677; this version posted June 30, 2020. -
Sirtuin 5: a Review of Structure, Known Inhibitors and Clues for Developing New Inhibitors
SCIENCE CHINA Life Sciences • REVIEW • March 2017 Vol.60 No.3:249–256 doi: 10.1007/s11427-016-0060-7 Sirtuin 5: a review of structure, known inhibitors and clues for developing new inhibitors Lingling Yang1, Xiaobo Ma1, Yanying He1, Chen Yuan1, Quanlong Chen1, Guobo Li2* & Xianggui Chen1** 1College of Food and Bioengineering, Xihua University, Sichuan 610039, China; 2Key Laboratory of Drug Targeting and Drug Delivery System of Ministry of Education, West China School of Pharmacy, Sichuan University, Chengdu 610041, China Received March 21, 2016; accepted May 23, 2016; published online November 17, 2016 Sirtuins (SIRTs) are nicotinamide adenine dinucleotide (NAD+)-dependent protein deacetylases, which regulate important biological processes ranging from apoptosis, age-associated pathophysiologies, adipocyte and muscle differentiation, and energy expenditure to gluconeogenesis. Very recently, sirtuin 5 (SIRT5) has received considerable attention due to that it was found to have weak deacetylase activity but strong desuccinylase, demalonylase and deglutarylase activities, and it was also found to be associated with several human diseases such as cancer, Alzheimer’s disease, and Parkinson’s disease. In this review, we for the first time summarized the structure characteristics, known peptide and small-molecule inhibitors of SIRT5, extracted someclues from current available information and introduced some feasible, practical in silico methods, which might be useful in further efforts to develop new SIRT5 inhibitors. Sirtuin, SIRT5 inhibitor, crystal structure, small-molecule inhibitors, computer-aided drug design Citation: Yang, L., Ma, X., He, Y., Yuan, C., Chen, Q., Li, G., and Chen, X. (2017). Sirtuin 5: a review of structure, known inhibitors and clues for developing new inhibitors. -
Sirtuin 7 Promotes 45S Pre-Rrna Cleavage at Site 2 and Determines
© 2019. Published by The Company of Biologists Ltd | Journal of Cell Science (2019) 132, jcs228601. doi:10.1242/jcs.228601 RESEARCH ARTICLE Sirtuin 7 promotes 45S pre-rRNA cleavage at site 2 and determines the processing pathway Valentina Sirri1, Alice Grob2,Jérémy Berthelet1, Nathalie Jourdan3 and Pascal Roussel1,* ABSTRACT localized in the DFC whereas those implicated in later stages are In humans, ribosome biogenesis mainly occurs in nucleoli following enriched in the GC (Hernandez-Verdun et al., 2010). two alternative pre-rRNA processing pathways differing in the order in Several hundred pre-rRNA processing factors are involved in which cleavages take place but not by the sites of cleavage. To ribosome biogenesis (Tafforeau et al., 2013). Ribosomal proteins, uncover the role of the nucleolar NAD+-dependent deacetylase sirtuin non-ribosomal proteins and small nucleolar ribonucleoprotein 7 in the synthesis of ribosomal subunits, pre-rRNA processing was complexes (snoRNPs) co- and post-transcriptionally associate with analyzed after sirtinol-mediated inhibition of sirtuin 7 activity or 47S pre-rRNAs to form the 90S pre-ribosomal particle (Grandi et al., depletion of sirtuin 7 protein. We thus reveal that sirtuin 7 activity is a 2002), also named the small subunit (SSU) processome (Dragon critical regulator of processing of 45S, 32S and 30S pre-rRNAs. et al., 2002), which is rapidly processed into 40S and 60S pre- Sirtuin 7 protein is primarily essential to 45S pre-rRNA cleavage at ribosomal particles. These pre-ribosomal particles are further site 2, which is the first step of processing pathway 2. Furthermore, we matured to generate the 40S and 60S ribosomal subunits. -
Sirtuin As the Target of Anti-Cancer Therapy
Baran Marzena, Miziak Paulina, Bonio Katarzyna. Sirtuin as the target of anti-cancer therapy. Journal of Education, Health and Sport. 2020;10(8):240-243. eISSN 2391-8306. DOI http://dx.doi.org/10.12775/JEHS.2020.10.08.027 https://apcz.umk.pl/czasopisma/index.php/JEHS/article/view/JEHS.2020.10.08.027 https://zenodo.org/record/3987512 The journal has had 5 points in Ministry of Science and Higher Education parametric evaluation. § 8. 2) and § 12. 1. 2) 22.02.2019. © The Authors 2020; This article is published with open access at Licensee Open Journal Systems of Nicolaus Copernicus University in Torun, Poland Open Access. This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author (s) and source are credited. This is an open access article licensed under the terms of the Creative Commons Attribution Non commercial license Share alike. (http://creativecommons.org/licenses/by-nc-sa/4.0/) which permits unrestricted, non commercial use, distribution and reproduction in any medium, provided the work is properly cited. The authors declare that there is no conflict of interests regarding the publication of this paper. Received: 01.08.2020. Revised: 05.08.2020. Accepted: 17.08.2020. Sirtuin as the target of anti-cancer therapy Marzena Baran1, Paulina Miziak1, Katarzyna Bonio2 1Chair and Department of Biochemistry and Molecular Biology, Medical University of Lublin 2 Department of Cell Biology, Institute of Biological Sciences, Maria Curie-Skłodowska University, Lublin Abstract Sirtuins is a group of nicotinamide dinucleotide (NAD +) - dependent, which have deacetylation and ADP-ribosylation activity.