Non-Darwinian Evolution James F
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Population Size and the Rate of Evolution
Review Population size and the rate of evolution 1,2 1 3 Robert Lanfear , Hanna Kokko , and Adam Eyre-Walker 1 Ecology Evolution and Genetics, Research School of Biology, Australian National University, Canberra, ACT, Australia 2 National Evolutionary Synthesis Center, Durham, NC, USA 3 School of Life Sciences, University of Sussex, Brighton, UK Does evolution proceed faster in larger or smaller popu- mutations occur and the chance that each mutation lations? The relationship between effective population spreads to fixation. size (Ne) and the rate of evolution has consequences for The purpose of this review is to synthesize theoretical our ability to understand and interpret genomic varia- and empirical knowledge of the relationship between tion, and is central to many aspects of evolution and effective population size (Ne, Box 1) and the substitution ecology. Many factors affect the relationship between Ne rate, which we term the Ne–rate relationship (NeRR). A and the rate of evolution, and recent theoretical and positive NeRR implies faster evolution in larger popula- empirical studies have shown some surprising and tions relative to smaller ones, and a negative NeRR implies sometimes counterintuitive results. Some mechanisms the opposite (Figure 1A,B). Although Ne has long been tend to make the relationship positive, others negative, known to be one of the most important factors determining and they can act simultaneously. The relationship also the substitution rate [5–8], several novel predictions and depends on whether one is interested in the rate of observations have emerged in recent years, causing some neutral, adaptive, or deleterious evolution. Here, we reassessment of earlier theory and highlighting some gaps synthesize theoretical and empirical approaches to un- in our understanding. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Taylor & Francis Not for Distribution
Template: Royal A, Font: , Date: 11/07/2011; 3B2 version: 9.1.406/W Unicode (May 24 2007) (APS_OT) Dir: //integrafs1/kcg/2-Pagination/TandF/RCRS/ApplicationFiles/9780415492447.3d 3URRI (iii) Complexity, emergence, and eliminativism 7D\ORU )UDQFLV 1RWIRUGLVWULEXWLRQ 3URRI Template: Royal A, Font: , Date: 11/07/2011; 3B2 version: 9.1.406/W Unicode (May 24 2007) (APS_OT) Dir: //integrafs1/kcg/2-Pagination/TandF/RCRS/ApplicationFiles/9780415492447.3d 3URRI 7D\ORU )UDQFLV 1RWIRUGLVWULEXWLRQ 3URRI Template: Royal A, Font: , Date: 11/07/2011; 3B2 version: 9.1.406/W Unicode (May 24 2007) (APS_OT) Dir: //integrafs1/kcg/2-Pagination/TandF/RCRS/ApplicationFiles/9780415492447.3d 3URRI 18 ELIMINATIVISM, COMPLEXITY, AND EMERGENCE Terrence Deacon and Tyrone Cashman The emergence paradox The evolutionary perspective turned the classic worldview on its head. Since Roman times, the world was understood to be hierarchic in structure, explained by a transcen- dent mind at the top. From there, the great chain of being cascaded down through angels, humans, frogs, protozoa, and finally stones. Inverting the chain of being switched mind from being7D\ORU )UDQFLV the ultimate explanation of things, to being the mystery to be explained. As an early critic of Darwin protested, this theory assumes that “Absolute Ignorance” is the ultimate artificer, even of life and mind (MacKenzie 1868). However, the1RWIRUGLVWULEXWLRQ notion that the distinctive properties of life and mind were pro- duced by a blind mechanism from inanimate matter runs counter to a fundamental assumption of Western thought. It is expressed in the oft-quoted dictum of the Roman poet–scientist Lucretius: “ex nihilo nihil fit,” from nothing, nothing [can be] produced (1994 [n.d.]). -
IN EVOLUTION JACK LESTER KING UNIVERSITY of CALIFORNIA, SANTA BARBARA This Paper Is Dedicated to Retiring University of California Professors Curt Stern and Everett R
THE ROLE OF MUTATION IN EVOLUTION JACK LESTER KING UNIVERSITY OF CALIFORNIA, SANTA BARBARA This paper is dedicated to retiring University of California Professors Curt Stern and Everett R. Dempster. 1. Introduction Eleven decades of thought and work by Darwinian and neo-Darwinian scientists have produced a sophisticated and detailed structure of evolutionary ,theory and observations. In recent years, new techniques in molecular biology have led to new observations that appear to challenge some of the basic theorems of classical evolutionary theory, precipitating the current crisis in evolutionary thought. Building on morphological and paleontological observations, genetic experimentation, logical arguments, and upon mathematical models requiring simplifying assumptions, neo-Darwinian theorists have been able to make some remarkable predictions, some of which, unfortunately, have proven to be inaccurate. Well-known examples are the prediction that most genes in natural populations must be monomorphic [34], and the calculation that a species could evolve at a maximum rate of the order of one allele substitution per 300 genera- tions [13]. It is now known that a large proportion of gene loci are polymorphic in most species [28], and that evolutionary genetic substitutions occur in the human line, for instance, at a rate of about 50 nucleotide changes per generation [20], [24], [25], [26]. The puzzling observation [21], [40], [46], that homologous proteins in different species evolve at nearly constant rates is very difficult to account for with classical evolutionary theory, and at the very least gives a solid indication that there are qualitative differences between the ways molecules evolve and the ways morphological structures evolve. -
Trinitizing the Universe: Teilhard's Theogenesis and the Dynamism Of
Open Theology 2018; 4: 158–169 Intersubjectivity and Reciprocal Causality within Contemporary Understanding of the God-World Relationship Ilia Delio* Trinitizing the Universe: Teilhard’s Theogenesis and the Dynamism of Love https://doi.org/10.1515/opth-2018-0011 Received January 20, 2018; accepted January 24, 2018 Abstract: The God-world relationship bears an ambiguous relationship between God’s immanent life and God’s life in history. The development of the doctrine of the Trinity in the early Church gave rise to a distinction between theologia and oikonomia. Bonaventure’s theology sought to express an economic trinitarianism without compromising the integrity of God’s life, thus maintaining divine immutability and divine impassibility. Twentieth century trinitarian theologies challenge the notion of divine immutability in light of modern science and radical suffering. This paper develops on the heels of twentieth century theology by focusing in particular on the philosophical shifts rendered by modern science and technology. In particular, the insights of Pierre Teilhard de Chardin are explored with regard to Trinity and evolution, precisely because Teilhard intuited that evolution and the new physics evoke a radically new understanding of God. Building on Teilhard’s insights, I suggest that divine creative love is expressed in a fourth mystery which Teilhard called ‟pleromization.” Pleromization is the outflow of divine creative union or, literally, God filling the universe with divine life. Teilhard recapitulates this idea in the evolution of Christ so that theologia and oikonomia are one movement of divine love. My principal thesis is that the Trinity is integrally related to the world; the fullness of divine love includes the personalization of created reality, symbolized by the Christ. -
Punctuated Equilibrium Vs. Phyletic Gradualism
International Journal of Bio-Science and Bio-Technology Vol. 3, No. 4, December, 2011 Punctuated Equilibrium vs. Phyletic Gradualism Monalie C. Saylo1, Cheryl C. Escoton1 and Micah M. Saylo2 1 University of Antique, Sibalom, Antique, Philippines 2 DepEd Sibalom North District, Sibalom, Antique, Philippines [email protected] Abstract Both phyletic gradualism and punctuated equilibrium are speciation theory and are valid models for understanding macroevolution. Both theories describe the rates of speciation. For Gradualism, changes in species is slow and gradual, occurring in small periodic changes in the gene pool, whereas for Punctuated Equilibrium, evolution occurs in spurts of relatively rapid change with long periods of non-change. The gradualism model depicts evolution as a slow steady process in which organisms change and develop slowly over time. In contrast, the punctuated equilibrium model depicts evolution as long periods of no evolutionary change followed by rapid periods of change. Both are models for describing successive evolutionary changes due to the mechanisms of evolution in a time frame. Keywords: macroevolution, phyletic gradualism, punctuated equilibrium, speciation, evolutionary change 1. Introduction Has the evolution of life proceeded as a gradual stepwise process, or through relatively long periods of stasis punctuated by short periods of rapid evolution? To date, what is clear is that both evolutionary patterns – phyletic gradualism and punctuated equilibrium have played at least some role in the evolution of life. Gradualism and punctuated equilibrium are two ways in which the evolution of a species can occur. A species can evolve by only one of these, or by both. Scientists think that species with a shorter evolution evolved mostly by punctuated equilibrium, and those with a longer evolution evolved mostly by gradualism. -
Creation and the Theory of Evolution
University of Pennsylvania ScholarlyCommons Boardman Lectureship in Christian Ethics Department of Religious Studies 4-24-1997 Creation and the Theory of Evolution Francisco J. Ayala University of California, Irvine Wolfhart Pannenberg University of Munich Follow this and additional works at: https://repository.upenn.edu/boardman Part of the Ecology and Evolutionary Biology Commons Recommended Citation Ayala, Francisco J. and Pannenberg, Wolfhart, "Creation and the Theory of Evolution" (1997). Boardman Lectureship in Christian Ethics. 6. https://repository.upenn.edu/boardman/6 Boardman Lecture XXXV. Edited and Foreword by Susan Marks. This paper is posted at ScholarlyCommons. https://repository.upenn.edu/boardman/6 For more information, please contact [email protected]. Creation and the Theory of Evolution Abstract The Boardman Lecture, in cooperation with the Center For Theology and The Natural Sciences and The John Templeton Foundation, funded a conference on Creation and Theory of Evolution. The conference explored religion and science by offering two different approaches to the question of human origins. Geneticist Francisco Ayala explains the present state of our understanding of evolution and argues that such human phenomena as morality and religion are by-products of the evolutionary process that cannot be explained by natural selection. His lecture appears as "The Evolutionary Transcendence of Humankind." Dr. Pannenberg stressed that the God of religious faith must be the Creator of the same nature that is studied by scientists. He explores aspects of the Genesis creation story that are compatible with the theory of evolution. His lecture is "Human Life: Creation Versus Evolution?" Disciplines Ecology and Evolutionary Biology Comments Boardman Lecture XXXV. -
5. EVOLUTION AS a POPULATION-GENETIC PROCESS 5 April 2020
æ 5. EVOLUTION AS A POPULATION-GENETIC PROCESS 5 April 2020 With knowledge on rates of mutation, recombination, and random genetic drift in hand, we now consider how the magnitudes of these population-genetic features dictate the paths that are open vs. closed to evolutionary exploitation in various phylogenetic lineages. Because historical contingencies exist throughout the Tree of Life, we cannot expect to derive from first principles the source of every molecular detail of cellular diversification. We can, however, use established theory to address more general issues, such as the degree of attainable molecular refinement, rates of transition from one state to another, and the degree to which nonadaptive processes (mutation and random genetic drift) contribute to phylogenetic diversification. Substantial reviews of the field of evolutionary theory appear in Charlesworth and Charlesworth (2010) and Walsh and Lynch (2018). Much of the field is con- cerned with the mechanisms maintaining genetic variation within populations, as this ultimately dictates various aspects of the short-term response to selection. Here, however, we are primarily concerned with long-term patterns of phylogenetic diver- sification, so the focus is on the divergence of mean phenotypes. This still requires some knowledge of the principles of population genetics, as evolutionary divergence is ultimately a consequence of the accrual of genetic modifications at the population level. All evolutionary change initiates as a transient phase of genetic polymor- phism, during which mutant alleles navigate the rough sea of random genetic drift, often being evaluated on various genetic backgrounds, with some paths being more accessible to natural selection than others. -
Table of Contents
PHYSICS OF THE WORLD-SOUL: THE RELEVANCE OF ALFRED NORTH WHITEHEAD’S PHILOSOPHY OF ORGANISM TO CONTEMPORARY SCIENTIFIC COSMOLOGY Matthew David Segall Editor’s Note: Alfred North Whitehead was a British mathematician, logician and philosopher. His early work, as a student and professor at Cambridge University, was on mathematics and logic. The second period, 1910-24, when he had appointments at University College London and Imperial College of Science and Technology in London, he concentrated on the philosophy of science. The last period, beginning in 1924 and during which he taught philosophy at Harvard, he concentrated on Alfred North Whitehead metaphysics. His philosophy is known as both (1861-1947) philosophy of organism and process philosophy. Copyright © 2013 by Matthew David Segall All rights reserved. Without limiting the rights under copyright reserved above, no part of this publication may be reproduced, stored in or introduced into a retrieval system, or transmitted, in any form, or by any means (electronic, mechanical, photocopying, recording, or otherwise) without the prior written permission of the copyright owner. Table of Contents INTRODUCTION: FROM PHYSICS TO PHILOSOPHY 2 THE SUNSET OF MATERIALISM: WHITEHEAD’S PHILOSOPHY OF SCIENCE 8 WHITEHEAD’S ONTOLOGY OF ORGANISM 16 WHITEHEAD AND CONTEMPORARY SCIENTIFIC THEORY 25 The Imaginative Generalization of Evolutionary Theory 28 Space-Time in an Ontology of Organism 33 Quantum Decoherence and the Incompleteness of Nature 42 TOWARDS A PHYSICS OF THE WORLD-SOUL 51 BIBLIOGRAPHY 59 1 INTRODUCTION: FROM PHYSICS TO PHILOSOPHY How shallow, puny, and imperfect are efforts to sound the depths in the nature of things. In philosophical discussion, the merest hint of dogmatic certainty as to finality of statement is an exhibition of folly. -
Speciation and Bursts of Evolution
Evo Edu Outreach (2008) 1:274–280 DOI 10.1007/s12052-008-0049-4 ORIGINAL SCIENTIFIC ARTICLE Speciation and Bursts of Evolution Chris Venditti & Mark Pagel Published online: 5 June 2008 # Springer Science + Business Media, LLC 2008 Abstract A longstanding debate in evolutionary biology Darwin’s gradualistic view of evolution has become widely concerns whether species diverge gradually through time or accepted and deeply carved into biological thinking. by rapid punctuational bursts at the time of speciation. The Over 110 years after Darwin introduced the idea of natural theory of punctuated equilibrium states that evolutionary selection in his book The Origin of Species, two young change is characterised by short periods of rapid evolution paleontologists put forward a controversial new theory of the followed by longer periods of stasis in which no change tempo and mode of evolutionary change. Niles Eldredge and occurs. Despite years of work seeking evidence for Stephen Jay Gould’s(Eldredge1971; Eldredge and Gould punctuational change in the fossil record, the theory 1972)theoryofPunctuated Equilibria questioned Darwin’s remains contentious. Further there is little consensus as to gradualistic account of evolution, asserting that the majority the size of the contribution of punctuational changes to of evolutionary change occurs at or around the time of overall evolutionary divergence. Here we review recent speciation. They further suggested that very little change developments which show that punctuational evolution is occurred between speciation events—aphenomenonthey common and widespread in gene sequence data. referred to as evolutionary stasis. Eldredge and Gould had arrived at their theory by Keywords Speciation . Evolution . Phylogeny. -
Molecular Lamarckism: on the Evolution of Human Intelligence
World Futures The Journal of New Paradigm Research ISSN: 0260-4027 (Print) 1556-1844 (Online) Journal homepage: https://www.tandfonline.com/loi/gwof20 Molecular Lamarckism: On the Evolution of Human Intelligence Fredric M. Menger To cite this article: Fredric M. Menger (2017) Molecular Lamarckism: On the Evolution of Human Intelligence, World Futures, 73:2, 89-103, DOI: 10.1080/02604027.2017.1319669 To link to this article: https://doi.org/10.1080/02604027.2017.1319669 © 2017 The Author(s). Published with license by Taylor & Francis Group, LLC© Fredric M. Menger Published online: 26 May 2017. Submit your article to this journal Article views: 3145 View related articles View Crossmark data Citing articles: 1 View citing articles Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=gwof20 World Futures, 73: 89–103, 2017 Copyright © Fredric M. Menger ISSN: 0260-4027 print / 1556-1844 online DOI: 10.1080/02604027.2017.1319669 MOLECULAR LAMARCKISM: ON THE EVOLUTION OF HUMAN INTELLIGENCE Fredric M. Menger Emory University, Atlanta, Georgia, USA In modern times, Lamarck’s view of evolution, based on inheritance of acquired traits has been superseded by neo-Darwinism, based on random DNA mutations. This article begins with a series of observations suggesting that Lamarckian inheritance is in fact operative throughout Nature. I then launch into a discussion of human intelligence that is the most important feature of human evolution that cannot be easily explained by mutational -
RECOMBINATION and the RATE of EVOLUTION HE Process Of
Symposium on Genetic Exchange : XI11 International Congress of Genetics RECOMBINATION AND THE RATE OF EVOLUTION J. h4AYNARD SMITH School of Biological Sciences, University of Sussex, Brighton, Sussex, England HE process of genetic recombination has evolved because it confers a selec- tive advantage on its possessors. Two fundamentally different suggestions have been made as to the nature of this selective advantage. The first, originating with WEISMANN(1904) and formulated more precisely by FISHER(1930) and MULLER(1932), is that populations with genetic recombination evolve more rapidly than those without, and hence survive environmental changes which cause the extinction of asexual populations. Although widely accepted, this explanation has a drawback (which was clearly recognized by FISHER); it relies on selection acting between groups or species and not between individuals. It is the species which evolves or goes extinct, not the individual. To the extent that species go extinct much less frequently than individuals die, group selection is less effective than individual selection. This has led some evolutionists to doubt whether an adaptation as complex as sexual reproduction and genetic recombi- nation could have evolved by a process as inefficient as group selection. The alternative explanation, strongly argued by WILLIAMS(1968, 1973), is that recombination is an immediate advantage because an individual which produces a more variable progeny is more likely to produce at least some off- spring of very high fitness. If inter-individual selection is very intense, so that only those individuals with the optimal genotype for the local environment are able to survive, it is possible that sexual reproduction might be an immediate advantage.