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Knowledge Management Enviroments for High Throughput Biology
Knowledge Management Enviroments for High Throughput Biology Abhey Shah A Thesis submitted for the degree of MPhil Biology Department University of York September 2007 Abstract With the growing complexity and scale of data sets in computational biology and chemoin- formatics, there is a need for novel knowledge processing tools and platforms. This thesis describes a newly developed knowledge processing platform that is different in its emphasis on architecture, flexibility, builtin facilities for datamining and easy cross platform usage. There exist thousands of bioinformatics and chemoinformatics databases, that are stored in many different forms with different access methods, this is a reflection of the range of data structures that make up complex biological and chemical data. Starting from a theoretical ba- sis, FCA (Formal Concept Analysis) an applied branch of lattice theory, is used in this thesis to develop a file system that automatically structures itself by it’s contents. The procedure of extracting concepts from data sets is examined. The system also finds appropriate labels for the discovered concepts by extracting data from ontological databases. A novel method for scaling non-binary data for use with the system is developed. Finally the future of integrative systems biology is discussed in the context of efficiently closed causal systems. Contents 1 Motivations and goals of the thesis 11 1.1 Conceptual frameworks . 11 1.2 Biological foundations . 12 1.2.1 Gene expression data . 13 1.2.2 Ontology . 14 1.3 Knowledge based computational environments . 15 1.3.1 Interfaces . 16 1.3.2 Databases and the character of biological data . -
Computerized Patient Record System (CPRS) Setup Guide
Computerized Patient Record System (CPRS) Setup Guide June 2021 Department of Veterans Affairs Health Data Systems Computerized Patient Record System Product Line Revision History Project Technical Date Patch Page Change Manager Writer 6/17/2021 OR*3*0*547 30 Added row to GUI Parameters SHRPE SHRPE Menu Options for OTH: GUI Add/Edit Local Message for OTH Button. Added Subsection for GUI 37-38 Add/Edit Local Message for OTH Button 10/16/2019 OR*3.0*397 All Added Revision dated REDACTED REDACTED 3/25/2019 (see below). Checked for 508 Compliance. Removed extra space between some pages. Removed extra Table of Contents from Pharmacy Packages section (G). 07/31/2019 OR*3.0*510 88 Added two NOTE: REDACTED REDACTED 3/25/2019 OR*3.0*397 21 Added ORSUPPLY Key REDACTED REDACTED 08/20/2018 XU*8.0*679 28 Added note regarding Electronic REDACTED REDACTED Signature Block restrictions. 03/30/2011 OR*3.0*272 5, 77, Changed references from REDACTED REDACTED 79, Duplicate Drug Class to 81, Duplicate Drug Therapy. 82, 93, 01/25/2007 OR*3.0*245 123 – Added information about the REDACTED REDACTED 125 new option, ORCM QUICK ORDERS BY USER 11/27/06 OR*3.0*242 182 Added information about the REDACTED REDACTED new way to edit items for the Nature of Order file. 12/30/04 36 Added new information about REDACTED REDACTED document templates. Computerized Patient Record System (CPRS) ii June 2021 Setup Guide Project Technical Date Patch Page Change Manager Writer 10/14/98 138 Added information about ORMTIME 10/15/98 14 Added explanation of global journaling 10/20/98 -
Acme As an Interactive Translation Environment
Acme as an Interactive Translation Environment Eric Nichols and Yuji Matsumoto {eric-n,matsu} ߞatߞ is.naist.jp Computational Linguistics Laboratory Nara Institute of Science and Technology ABSTRACT Translation is challenging and repetitive work. Computer-aided transla tion environments attempt to ease the monotony by automating many tasks for human translators, however, it is difficult to design user inter faces that are easy to use but that can also be adapted to a dynamic workflow. This is often a result of a lack of connection between the inter face and the tasks that the user wants to carry out. A better correspon dence between task and interface can be achieved by simplifying how software tools are named. One way of accomplishing this to embrace text as the interface. By providing a simple and consistent semantics for interpreting text as commands, the Acme text editor [1] makes it possible to build a system with a text-centered interface. In this paper we explore the implications this has for translation aid software. 1. Motivation Translation is an essential and important part of human communication. However, it is a very challenging task, requiring the translator to have a complete understanding of and a deep familiarity with the source and target languages. This difficulty is not eased by the fact that fundamentally it is an inherently repetitive task, consisting of looking up unfamiliar words and doing large amounts of editing to produce a good translation. Given these demands, computers provide a good way to ease this repetitiveness by automating lookup and editing; by converting resources like dictionaries, other transla tions, and collections of example sentences to a computer-readable format, lookups can be performed much faster. -
Header Manipulation Rules Resource Guide
Oracle® Communications Session Border Controller Header Manipulation Rules Resource Guide Release S-CZ8.0 September 2017 Oracle Communications Session Border Controller Header Manipulation Rules Resource Guide, Release S-CZ8.0 Copyright © 2014, 2017, Oracle and/or its affiliates. All rights reserved. This software and related documentation are provided under a license agreement containing restrictions on use and disclosure and are protected by intellectual property laws. Except as expressly permitted in your license agreement or allowed by law, you may not use, copy, reproduce, translate, broadcast, modify, license, transmit, distribute, exhibit, perform, publish, or display any part, in any form, or by any means. Reverse engineering, disassembly, or decompilation of this software, unless required by law for interoperability, is prohibited. The information contained herein is subject to change without notice and is not warranted to be error-free. If you find any errors, please report them to us in writing. If this is software or related documentation that is delivered to the U.S. Government or anyone licensing it on behalf of the U.S. Government, then the following notice is applicable: U.S. GOVERNMENT END USERS: Oracle programs, including any operating system, integrated software, any programs installed on the hardware, and/or documentation, delivered to U.S. Government end users are "commercial computer software" pursuant to the applicable Federal Acquisition Regulation and agency-specific supplemental regulations. As such, use, duplication, disclosure, modification, and adaptation of the programs, including any operating system, integrated software, any programs installed on the hardware, and/or documentation, shall be subject to license terms and license restrictions applicable to the programs. -
Protected Database Configuration Guide
Zero Data Loss Recovery Appliance Protected Database Configuration Guide Release 12.2 E88069-06 January 2019 Zero Data Loss Recovery Appliance Protected Database Configuration Guide, Release 12.2 E88069-06 Copyright © 2014, 2019, Oracle and/or its affiliates. All rights reserved. Contributing Authors: Glenn Maxey, Terence Buencamino, Padmaja Potineni Contributors: Andrew Babb, Anand Beldalker, Jin-Jwei Chen, Tim Chien, Sean Connelly, Donna Cooksey, Sam Corso, Steve Fogel, Muthu Olagappan, Jony Safi, Daniel Sears, Lawrence To, Steve Wertheimer This software and related documentation are provided under a license agreement containing restrictions on use and disclosure and are protected by intellectual property laws. Except as expressly permitted in your license agreement or allowed by law, you may not use, copy, reproduce, translate, broadcast, modify, license, transmit, distribute, exhibit, perform, publish, or display any part, in any form, or by any means. Reverse engineering, disassembly, or decompilation of this software, unless required by law for interoperability, is prohibited. The information contained herein is subject to change without notice and is not warranted to be error-free. If you find any errors, please report them to us in writing. If this is software or related documentation that is delivered to the U.S. Government or anyone licensing it on behalf of the U.S. Government, then the following notice is applicable: U.S. GOVERNMENT END USERS: Oracle programs, including any operating system, integrated software, any programs installed on the hardware, and/or documentation, delivered to U.S. Government end users are "commercial computer software" pursuant to the applicable Federal Acquisition Regulation and agency- specific supplemental regulations. -
Oracle CSM-SBC with Broadworks.Pdf
Oracle Communications Core Session Manager SCZ 7.1.5m1p1 and Oracle Communications Session Border Controller SCZ 7.2.0 with Broadworks Platform R19SP1 Technical Application Note Disclaimer The following is intended to outline our general product direction. It is intended for information purposes only, and may not be incorporated into any contract. It is not a commitment to deliver any material, code, or functionality, and should not be relied upon in making purchasing decisions. The development, release, and timing of any features or functionality described for Oracle’s products remains at the sole discretion of Oracle. 2 Table of Contents INTENDED AUDIENCE ...................................................................................................................................................... 5 DOCUMENT OVERVIEW .................................................................................................................................................. 5 INTRODUCTION ................................................................................................................................................................. 6 AUDIENCE ............................................................................................................................................................................................. 6 REQUIREMENTS ................................................................................................................................................................................... 6 ARCHITECTURE -
An Internet-Wide Analysis of Diffie-Hellman Key Exchange and X
Western University Scholarship@Western Electronic Thesis and Dissertation Repository 8-23-2017 1:30 PM An Internet-Wide Analysis of Diffie-Hellmane K y Exchange and X.509 Certificates in TLS Kristen Dorey The University of Western Ontario Supervisor Dr. Aleksander Essex The University of Western Ontario Graduate Program in Electrical and Computer Engineering A thesis submitted in partial fulfillment of the equirr ements for the degree in Master of Engineering Science © Kristen Dorey 2017 Follow this and additional works at: https://ir.lib.uwo.ca/etd Recommended Citation Dorey, Kristen, "An Internet-Wide Analysis of Diffie-Hellmane K y Exchange and X.509 Certificates in TLS" (2017). Electronic Thesis and Dissertation Repository. 4792. https://ir.lib.uwo.ca/etd/4792 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. Abstract Transport Layer Security (TLS) is a mature cryptographic protocol, but has flexibility dur- ing implementation which can introduce exploitable flaws. New vulnerabilities are routinely discovered that affect the security of TLS implementations. We discovered that discrete logarithm implementations have poor parameter validation, and we mathematically constructed a deniable backdoor to exploit this flaw in the finite field Diffie-Hellman key exchange. We described attack vectors an attacker could use to position this backdoor, and outlined a man-in-the-middle attack that exploits the backdoor to force Diffie-Hellman use during the TLS connection. We conducted an Internet-wide survey of ephemeral finite field Diffie-Hellman (DHE) across TLS and STARTTLS, finding hundreds of potentially backdoored DHE parameters and partially recovering the private DHE key in some cases. -
Lifetime Support Policy: Oracle and Sun Systems Software
Oracle and Sun System Software and Operating Systems Oracle Lifetime Support Policy September 21, 2021, 2021 | Version 1.00 Copyright © 2021, Oracle and/or its affiliates TABLE OF CONTENTS This brochure provides lifecycle timeframes for system software that is typically sold Additional Sun software is located in the standalone, but used in conjunction with specific Oracle or Sun products. Product Oracle Fusion Middleware, Oracle areas include server and storage management, Sun third-party, communication and Technology and Oracle Applications collaboration and Sun Ray. Lifetime Support Policy brochures located on www.oracle.com. ORACLE LIFETIME SUPPORT: 2 Please see the Oracle Software Oracle Communications Session Border Controller (Formerly Acme Packet Net-Net) 5 Technical Support Policies document Oracle Communications Tunneled Session Controller (Formerly Acme Packet NetNet) 5 located on www.oracle.com for Oracle Communications Application Session Controller (Formerly Acme Packet Net-Net) 5 additional terms and descriptions. Oracle Communications Unified Session Manager (Formerly Acme Packet Net-Net) 6 Oracle Communications Subscriber Aware Load Balancer (Formerly Acme Packet Net-Net) 6 Oracle Communications Border Gateway (Formerly Acme Packet Net-Net Border Gateway) 6 Oracle Communications Core Session Manager 7 Oracle Communications Session Router (Formerly Acme Packet Net-Net Session Router) 7 Oracle Communications Security Gateway (Formerly Acme Packet Net-Net Security Gateway) 7 Oracle Communications Session Monitor Family of -
Acme: a User Interface for Programmers Rob Pike AT&T Bell Laboratories Murray Hill, New Jersey 07974
Acme: A User Interface for Programmers Rob Pike AT&T Bell Laboratories Murray Hill, New Jersey 07974 ABSTRACT A hybrid of window system, shell, and editor, Acme gives text-oriented applications a clean, expressive, and consistent style of interaction. Traditional window systems support inter- active client programs and offer libraries of pre-defined operations such as pop-up menus and buttons to promote a consistent user interface among the clients. Acme instead provides its clients with a fixed user interface and simple conventions to encourage its uniform use. Clients access the facilities of Acme through a file system interface; Acme is in part a file server that exports device-like files that may be manipulated to access and control the contents of its win- dows. Written in a concurrent programming language, Acme is structured as a set of communi- cating processes that neatly subdivide the various aspects of its tasks: display management, input, file server, and so on. Acme attaches distinct functions to the three mouse buttons: the left selects text; the mid- dle executes textual commands; and the right combines context search and file opening functions to integrate the various applications and files in the system. Acme works well enough to have developed a community that uses it exclusively. Although Acme discourages the traditional style of interaction based on typescript windows— teletypes—its users find Acme’s other services render typescripts obsolete. History and motivation The usual typescript style of interaction with Unix and its relatives is an old one. The typescript—an inter- mingling of textual commands and their output—originates with the scrolls of paper on teletypes. -
Régulation Et Autorégulation De L'information En Ligne Au Sénégal
Régulation et autorégulation de l’information en ligne au Sénégal : le cas des portails d’informations généralistes Seneweb et Leral El Hadji Malick Ndiaye To cite this version: El Hadji Malick Ndiaye. Régulation et autorégulation de l’information en ligne au Sénégal : le cas des portails d’informations généralistes Seneweb et Leral. Sciences de l’information et de la communica- tion. 2017. dumas-01679813 HAL Id: dumas-01679813 https://dumas.ccsd.cnrs.fr/dumas-01679813 Submitted on 10 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NDIAYE El Hadji Malick Régulation et autorégulation de l’information en ligne au Sénégal : le cas des portails d’informations généralistes Seneweb et Leral UFR Langage, lettres et arts du spectacle, information et communication Mémoire de master 2 Mention Information et communication Parcours : Information Communication Publique et Médias (ICPM) Sous la co-direction de Pr Bertrand Cabedoche et de Dr Sokhna Fatou Seck Sarr Année universitaire 2016-2017 1 Résumé : L’objectif de ce mémoire est d’analyser la régulation des portails d’information au Sénégal en interrogeant par la même occasion les pratiques auxquelles s’adonnent les acteurs de l’information en ligne. -
Red Hat Codeready Workspaces 2.4 End-User Guide
Red Hat CodeReady Workspaces 2.4 End-user Guide Using Red Hat CodeReady Workspaces 2.4 Last Updated: 2020-12-18 Red Hat CodeReady Workspaces 2.4 End-user Guide Using Red Hat CodeReady Workspaces 2.4 Robert Kratky [email protected] Michal Maléř [email protected] Fabrice Flore-Thébault [email protected] Yana Hontyk [email protected] Legal Notice Copyright © 2020 Red Hat, Inc. The text of and illustrations in this document are licensed by Red Hat under a Creative Commons Attribution–Share Alike 3.0 Unported license ("CC-BY-SA"). An explanation of CC-BY-SA is available at http://creativecommons.org/licenses/by-sa/3.0/ . In accordance with CC-BY-SA, if you distribute this document or an adaptation of it, you must provide the URL for the original version. Red Hat, as the licensor of this document, waives the right to enforce, and agrees not to assert, Section 4d of CC-BY-SA to the fullest extent permitted by applicable law. Red Hat, Red Hat Enterprise Linux, the Shadowman logo, the Red Hat logo, JBoss, OpenShift, Fedora, the Infinity logo, and RHCE are trademarks of Red Hat, Inc., registered in the United States and other countries. Linux ® is the registered trademark of Linus Torvalds in the United States and other countries. Java ® is a registered trademark of Oracle and/or its affiliates. XFS ® is a trademark of Silicon Graphics International Corp. or its subsidiaries in the United States and/or other countries. MySQL ® is a registered trademark of MySQL AB in the United States, the European Union and other countries. -
Funding by Source Fiscal Year Ending 2019 (Period: 1 July 2018 - 30 June 2019) ICANN Operations (Excluding New Gtld)
Funding by Source Fiscal Year Ending 2019 (Period: 1 July 2018 - 30 June 2019) ICANN Operations (excluding New gTLD) This report summarizes the total amount of revenue by customer as it pertains to ICANN's fiscal year 2019 Customer Class Customer Name Country Total RAR Network Solutions, LLC United States $ 1,257,347 RAR Register.com, Inc. United States $ 304,520 RAR Arq Group Limited DBA Melbourne IT Australia $ 33,115 RAR ORANGE France $ 8,258 RAR COREhub, S.R.L. Spain $ 35,581 RAR NameSecure L.L.C. United States $ 19,773 RAR eNom, LLC United States $ 1,064,684 RAR GMO Internet, Inc. d/b/a Onamae.com Japan $ 883,849 RAR DeluXe Small Business Sales, Inc. d/b/a Aplus.net Canada $ 27,589 RAR Advanced Internet Technologies, Inc. (AIT) United States $ 13,424 RAR Domain Registration Services, Inc. dba dotEarth.com United States $ 6,840 RAR DomainPeople, Inc. United States $ 47,812 RAR Enameco, LLC United States $ 6,144 RAR NordNet SA France $ 14,382 RAR Tucows Domains Inc. Canada $ 1,699,112 RAR Ports Group AB Sweden $ 10,454 RAR Online SAS France $ 31,923 RAR Nominalia Internet S.L. Spain $ 25,947 RAR PSI-Japan, Inc. Japan $ 7,615 RAR Easyspace Limited United Kingdom $ 23,645 RAR Gandi SAS France $ 229,652 RAR OnlineNIC, Inc. China $ 126,419 RAR 1&1 IONOS SE Germany $ 892,999 RAR 1&1 Internet SE Germany $ 667 RAR UK-2 Limited Gibraltar $ 5,303 RAR EPAG Domainservices GmbH Germany $ 41,066 RAR TierraNet Inc. d/b/a DomainDiscover United States $ 39,531 RAR HANGANG Systems, Inc.