Biol2007 the Origins of Species
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A Robust Test for Assortative Mating
European Journal of Human Genetics (2000) 8, 119–124 © 2000 Macmillan Publishers Ltd All rights reserved 1018–4813/00 $15.00 y www.nature.com/ejhg ARTICLE A robust test for assortative mating Emmanuelle G´enin1, Carole Ober2, Lowell Weitkamp3 and Glenys Thomson1 1Department of Integrative Biology, University of California, Berkeley, CA, USA; 2Department of Human Genetics, University of Chicago, Chicago, IL, USA; 3Department of Psychiatry and Division of Genetics, University of Rochester Medical Center, Rochester, NY, USA Testing for random mating in human populations is difficult due to confounding factors such as ethnic preference and population stratification. With HLA, the high level of polymorphism is an additional problem since it is rare for couples to share the same haplotype. Focus on an ethnically homogeneous population, where levels of polymorphism at HLA loci are more limited, may provide the best situation in which to detect non-random mating. However, such populations are often genetic isolates where there may be inbreeding to an extent that is difficult to quantify and account for. We have developed a test for random mating at a multiallelic locus that is robust to stratification and inbreeding. This test relies on the availability of genotypic information from the parents of both spouses. The focus of the test is on families where there is allele sharing between the parents of both spouses, so that potential spouses could share an allele. Denoting the shared allele at the locus of interest by A, then under the assumption of random mating, heterozygous parents AX should transmit allele A equally as frequently as allele X to their offspring. -
Buzzle – Zoology Terms – Glossary of Biology Terms and Definitions Http
Buzzle – Zoology Terms – Glossary of Biology Terms and Definitions http://www.buzzle.com/articles/biology-terms-glossary-of-biology-terms-and- definitions.html#ZoologyGlossary Biology is the branch of science concerned with the study of life: structure, growth, functioning and evolution of living things. This discipline of science comprises three sub-disciplines that are botany (study of plants), Zoology (study of animals) and Microbiology (study of microorganisms). This vast subject of science involves the usage of myriads of biology terms, which are essential to be comprehended correctly. People involved in the science field encounter innumerable jargons during their study, research or work. Moreover, since science is a part of everybody's life, it is something that is important to all individuals. A Abdomen: Abdomen in mammals is the portion of the body which is located below the rib cage, and in arthropods below the thorax. It is the cavity that contains stomach, intestines, etc. Abscission: Abscission is a process of shedding or separating part of an organism from the rest of it. Common examples are that of, plant parts like leaves, fruits, flowers and bark being separated from the plant. Accidental: Accidental refers to the occurrences or existence of all those species that would not be found in a particular region under normal circumstances. Acclimation: Acclimation refers to the morphological and/or physiological changes experienced by various organisms to adapt or accustom themselves to a new climate or environment. Active Transport: The movement of cellular substances like ions or molecules by traveling across the membrane, towards a higher level of concentration while consuming energy. -
Sympatric Speciation: Models and Empirical Evidence
ANRV328-ES38-19 ARI 24 September 2007 7:20 Sympatric Speciation: Models and Empirical Evidence Daniel I. Bolnick1 and Benjamin M. Fitzpatrick2 1Section of Integrative Biology, University of Texas, Austin, Texas 78712; email: [email protected] 2Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee 37996; email: benfi[email protected] Annu. Rev. Ecol. Evol. Syst. 2007. 38:459–87 Key Words First published online as a Review in Advance on assortative mating, disruptive selection, reinforcement August 8, 2007 reproductive isolation The Annual Review of Ecology, Evolution, and Systematics is online at Abstract http://ecolsys.annualreviews.org Sympatric speciation, the evolution of reproductive isolation with- This article’s doi: 10.1146/annurev.ecolsys.38.091206.095804 out geographic barriers, remains highly contentious. As a result of new empirical examples and theory, it is now generally accepted that Copyright c 2007 by Annual Reviews. All rights reserved sympatric speciation has occurred in at least a few instances, and is theoretically plausible. Instead, debate has shifted to whether sym- by Rutgers University Libraries on 09/21/09. For personal use only. 1543-592X/07/1201-0459$20.00 patric speciation is common, and whether models’ assumptions are generally met in nature. The relative frequency of sympatric spe- ciation will be difficult to resolve, because biogeographic changes have obscured geographical patterns underlying many past specia- Annu. Rev. Ecol. Evol. Syst. 2007.38:459-487. Downloaded from arjournals.annualreviews.org tion events. In contrast, progress is being made on evaluating the empirical validity of key theoretical conditions for sympatric spe- ciation. Disruptive selection and direct selection on mating traits, which should facilitate sympatric speciation, are biologically well supported. -
Random Mutation and Natural Selection in Competitive and Non-Competitive Environments
ISSN: 2574-1241 Volume 5- Issue 4: 2018 DOI: 10.26717/BJSTR.2018.09.001751 Alan Kleinman. Biomed J Sci & Tech Res Mini Review Open Access Random Mutation and Natural Selection In Competitive and Non-Competitive Environments Alan Kleinman* Department of Medicine, USA Received: : September 10, 2018; Published: September 18, 2018 *Corresponding author: Alan Kleinman, PO BOX 1240, Coarsegold, CA 93614, USA Abstract Random mutation and natural selection occur in a variety of different environments. Three of the most important factors which govern the rate at which this phenomenon occurs is whether there is competition between the different variants for the resources of the environment or not whether the replicator can do recombination and whether the intensity of selection has an impact on the evolutionary trajectory. Two different experimental models of random mutation and natural selection are analyzed to determine the impact of competition on random mutation and natural selection. One experiment places the different variants in competition for the resources of the environment while the lineages are attempting to evolve to the selection pressure while the other experiment allows the lineages to grow without intense competition for the resources of the environment while the different lineages are attempting to evolve to the selection pressure. The mathematics which governs either experiment is discussed, and the results correlated to the medical problem of the evolution of drug resistance. Introduction important experiments testing the RMNS phenomenon. And how Random mutation and natural selection (RMNS) are a does recombination alter the evolutionary trajectory to a given phenomenon which works to defeat the treatments physicians use selection pressure? for infectious diseases and cancers. -
Plant Evolution an Introduction to the History of Life
Plant Evolution An Introduction to the History of Life KARL J. NIKLAS The University of Chicago Press Chicago and London CONTENTS Preface vii Introduction 1 1 Origins and Early Events 29 2 The Invasion of Land and Air 93 3 Population Genetics, Adaptation, and Evolution 153 4 Development and Evolution 217 5 Speciation and Microevolution 271 6 Macroevolution 325 7 The Evolution of Multicellularity 377 8 Biophysics and Evolution 431 9 Ecology and Evolution 483 Glossary 537 Index 547 v Introduction The unpredictable and the predetermined unfold together to make everything the way it is. It’s how nature creates itself, on every scale, the snowflake and the snowstorm. — TOM STOPPARD, Arcadia, Act 1, Scene 4 (1993) Much has been written about evolution from the perspective of the history and biology of animals, but significantly less has been writ- ten about the evolutionary biology of plants. Zoocentricism in the biological literature is understandable to some extent because we are after all animals and not plants and because our self- interest is not entirely egotistical, since no biologist can deny the fact that animals have played significant and important roles as the actors on the stage of evolution come and go. The nearly romantic fascination with di- nosaurs and what caused their extinction is understandable, even though we should be equally fascinated with the monarchs of the Carboniferous, the tree lycopods and calamites, and with what caused their extinction (fig. 0.1). Yet, it must be understood that plants are as fascinating as animals, and that they are just as important to the study of biology in general and to understanding evolutionary theory in particular. -
Speciation in Heliconius Butterflies: Minimal Contact Followed 2 by Millions of Generations of Hybridisation 3 Simon H
bioRxiv preprint doi: https://doi.org/10.1101/015800; this version posted March 2, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 1 Speciation in Heliconius Butterflies: Minimal Contact Followed 2 by Millions of Generations of Hybridisation 3 Simon H. Martin*1, Anders Eriksson*1,2, Krzysztof M. Kozak1, Andrea Manica1 and 4 Chris D. Jiggins1 5 1 Department of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 6 3EJ, United Kingdom 7 2 Integrative Systems Biology Laboratory, King Abdullah University of Science 8 and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia 9 * These authors contributed equally 10 Corresponding Author: S.H. Martin, [email protected] 11 Running Head: Change in the rate of gene flow during butterfly speciation bioRxiv preprint doi: https://doi.org/10.1101/015800; this version posted March 2, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 2 12 Abstract 13 Documenting the full extent of gene flow during speciation poses a challenge, as 14 species ranges change over time and current rates of hybridisation might not reflect 15 historical trends. Theoretical work has emphasized the potential for speciation in the 16 face of ongoing hybridisation, and the genetic mechanisms that might facilitate this 17 process. -
Local Drift Load and the Heterosis of Interconnected Populations
Heredity 84 (2000) 452±457 Received 5 November 1999, accepted 9 December 1999 Local drift load and the heterosis of interconnected populations MICHAEL C. WHITLOCK*, PAÈ R K. INGVARSSON & TODD HATFIELD Department of Zoology, University of British Columbia, Vancouver, BC, Canada V6T 1Z4 We use Wright's distribution of equilibrium allele frequency to demonstrate that hybrids between populations interconnected by low to moderate levels of migration can have large positive heterosis, especially if the populations are small in size. Bene®cial alleles neither ®x in all populations nor equilibrate at the same frequency. Instead, populations reach a mutation±selection±drift±migration balance with sucient among-population variance that some partially recessive, deleterious mutations can be masked upon crossbreeding. This heterosis is greatest with intermediate mutation rates, intermediate selection coecients, low migration rates and recessive alleles. Hybrid vigour should not be taken as evidence for the complete isolation of populations. Moreover, we show that heterosis in crosses between populations has a dierent genetic basis than inbreeding depression within populations and is much more likely to result from alleles of intermediate eect. Keywords: deleterious mutations, heterosis, hybrid ®tness, inbreeding depression, migration, population structure. Introduction genetic drift, producing ospring with higher ®tness than the parents (see recent reviews on inbreeding in Crow (1948) listed several reasons why crosses between Thornhill, 1993). Decades of work in agricultural individuals from dierent lines or populations might genetics con®rms this pattern: when divergent lines are have increased ®tness relative to more `pure-bred' crossed their F1 ospring often perform substantially 1individuals, so-called `hybrid vigour'. Crow commented better than the average of the parents (Falconer, 1981; on many possible mechanisms behind hybrid vigour, Mather & Jinks, 1982). -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
Genetic Structure and Eco-Geographical Differentiation of Lancea Tibetica in the Qinghai-Tibetan Plateau
G C A T T A C G G C A T genes Article Genetic Structure and Eco-Geographical Differentiation of Lancea tibetica in the Qinghai-Tibetan Plateau Xiaofeng Chi 1,2 , Faqi Zhang 1,2,* , Qingbo Gao 1,2, Rui Xing 1,2 and Shilong Chen 1,2,* 1 Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810001, China; [email protected] (X.C.); [email protected] (Q.G.); [email protected] (R.X.) 2 Qinghai Provincial Key Laboratory of Crop Molecular Breeding, Xining 810001, China * Correspondence: [email protected] (F.Z.); [email protected] (S.C.) Received: 14 December 2018; Accepted: 24 January 2019; Published: 29 January 2019 Abstract: The uplift of the Qinghai-Tibetan Plateau (QTP) had a profound impact on the plant speciation rate and genetic diversity. High genetic diversity ensures that species can survive and adapt in the face of geographical and environmental changes. The Tanggula Mountains, located in the central of the QTP, have unique geographical significance. The aim of this study was to investigate the effect of the Tanggula Mountains as a geographical barrier on plant genetic diversity and structure by using Lancea tibetica. A total of 456 individuals from 31 populations were analyzed using eight pairs of microsatellite makers. The total number of alleles was 55 and the number per locus ranged from 3 to 11 with an average of 6.875. The polymorphism information content (PIC) values ranged from 0.2693 to 0.7761 with an average of 0.4378 indicating that the eight microsatellite makers were efficient for distinguishing genotypes. -
Allopatric Speciation with Little Niche Divergence Is Common Among
Journal of Biogeography (J. Biogeogr.) (2016) 43, 591–602 ORIGINAL Allopatric speciation with little niche ARTICLE divergence is common among alpine Primulaceae Florian C. Boucher1*, Niklaus E. Zimmermann2,3 and Elena Conti1 1Institute of Systematic Botany, University of ABSTRACT Zurich,€ 8008 Zurich,€ Switzerland, 2Dynamic Aim Despite the accumulation of cases describing fast radiations of alpine Macroecology, Swiss Federal Research plants, we still have limited understanding of the drivers of speciation in alpine Institute WSL, 8903 Birmensdorf, Switzerland, 3Department of Environmental floras and of the precise the timing of their diversification. Here, we investi- Systems Science, Swiss Federal Institute of gated spatial and temporal patterns of speciation in three groups of alpine Technology ETH, CH-8092 Zurich,€ Primulaceae. Switzerland Location Mountains of the European Alpine System. Methods We built a new phylogeny of Primulaceae including all species in three focal groups: Androsace sect. Aretia, Primula sect. Auricula and Soldanella. Combining phylogenetic information with a detailed climatic data set, we investigated patterns of range and ecological overlap between sister-species using an approach that takes phylogenetic uncertainty into account. Finally, we investigated temporal trajectories of diversification in the three focal groups. Results We found that a large majority of sister-species pairs in the three groups are strictly allopatric and show little differences in substrate and cli- matic preferences, a result that was robust to phylogenetic uncertainty. While rates of diversification have remained constant in Soldanella, both Androsace sect. Aretia and Primula sect. Auricula showed decreased diversification rates in the Pleistocene compared to previous geological epochs. Main conclusions Allopatric speciation with little niche divergence appears to have been by far the most common mode of speciation across the three groups studied. -
Can Secondary Contact Following Range Expansion Be Distinguished from Barriers to Gene flow?
Can secondary contact following range expansion be distinguished from barriers to gene flow? Johanna Bertl1,2, Harald Ringbauer3,4 and Michael G.B. Blum5 1 Department of Molecular Medicine, Aarhus University, Aarhus, Denmark 2 Vienna Graduate School of Population Genetics, Vetmeduni Vienna, Vienna, Austria 3 Department of Human Genetics, University of Chicago, Chicago, IL, USA 4 Institute of Science and Technology Austria, Klosterneuburg, Austria 5 Laboratoire TIMC-IMAG, UMR 5525, Université Grenoble Alpes, CNRS, Grenoble, France ABSTRACT Secondary contact is the reestablishment of gene flow between sister populations that have diverged. For instance, at the end of the Quaternary glaciations in Europe, secondary contact occurred during the northward expansion of the populations which had found refugia in the southern peninsulas. With the advent of multi-locus markers, secondary contact can be investigated using various molecular signatures including gradients of allele frequency, admixture clines, and local increase of genetic differentiation. We use coalescent simulations to investigate if molecular data provide enough information to distinguish between secondary contact following range expansion and an alternative evolutionary scenario consisting of a barrier to gene flow in an isolation-by-distance model. We find that an excess of linkage disequilibrium and of genetic diversity at the suture zone is a unique signature of secondary contact. We also find that the directionality index c, which was proposed to study range expansion, is informative to distinguish between the two hypotheses. However, although evidence for secondary contact is usually conveyed by statistics related to admixture coefficients, we find that they can be confounded by isolation-by-distance. We recommend to account for the spatial repartition of fl Submitted 29 November 2016 individuals when investigating secondary contact in order to better re ect the Accepted 1 July 2018 complex spatio-temporal evolution of populations and species. -
Microevolution: Species Concept Core Course: ZOOL3014 B.Sc. (Hons’): Vith Semester
Microevolution: Species concept Core course: ZOOL3014 B.Sc. (Hons’): VIth Semester Prof. Pranveer Singh Clines A cline is a geographic gradient in the frequency of a gene, or in the average value of a character Clines can arise for different reasons: • Natural selection favors a slightly different form along the gradient • It can also arise if two forms are adapted to different environments separated in space and migration (gene flow) takes place between them Term coined by Julian Huxley in 1838 Geographic variation normally exists in the form of a continuous cline A sudden change in gene or character frequency is called a stepped cline An important type of stepped cline is a hybrid zone, an area of contact between two different forms of a species at which hybridization takes place Drivers and evolution of clines Two populations with individuals moving between the populations to demonstrate gene flow Development of clines 1. Primary differentiation / Primary contact / Primary intergradation Primary differentiation is demonstrated using the peppered moth as an example, with a change in an environmental variable such as sooty coverage of trees imposing a selective pressure on a previously uniformly coloured moth population This causes the frequency of melanic morphs to increase the more soot there is on vegetation 2. Secondary contact / Secondary intergradation / Secondary introgression Secondary contact between two previously isolated populations Two previously isolated populations establish contact and therefore gene flow, creating an