Algorithmic Information Theory
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												Information Theory Techniques for Multimedia Data Classification and Retrieval
INFORMATION THEORY TECHNIQUES FOR MULTIMEDIA DATA CLASSIFICATION AND RETRIEVAL Marius Vila Duran Dipòsit legal: Gi. 1379-2015 http://hdl.handle.net/10803/302664 http://creativecommons.org/licenses/by-nc-sa/4.0/deed.ca Aquesta obra està subjecta a una llicència Creative Commons Reconeixement- NoComercial-CompartirIgual Esta obra está bajo una licencia Creative Commons Reconocimiento-NoComercial- CompartirIgual This work is licensed under a Creative Commons Attribution-NonCommercial- ShareAlike licence DOCTORAL THESIS Information theory techniques for multimedia data classification and retrieval Marius VILA DURAN 2015 DOCTORAL THESIS Information theory techniques for multimedia data classification and retrieval Author: Marius VILA DURAN 2015 Doctoral Programme in Technology Advisors: Dr. Miquel FEIXAS FEIXAS Dr. Mateu SBERT CASASAYAS This manuscript has been presented to opt for the doctoral degree from the University of Girona List of publications Publications that support the contents of this thesis: "Tsallis Mutual Information for Document Classification", Marius Vila, Anton • Bardera, Miquel Feixas, Mateu Sbert. Entropy, vol. 13, no. 9, pages 1694-1707, 2011. "Tsallis entropy-based information measure for shot boundary detection and • keyframe selection", Marius Vila, Anton Bardera, Qing Xu, Miquel Feixas, Mateu Sbert. Signal, Image and Video Processing, vol. 7, no. 3, pages 507-520, 2013. "Analysis of image informativeness measures", Marius Vila, Anton Bardera, • Miquel Feixas, Philippe Bekaert, Mateu Sbert. IEEE International Conference on Image Processing pages 1086-1090, October 2014. "Image-based Similarity Measures for Invoice Classification", Marius Vila, Anton • Bardera, Miquel Feixas, Mateu Sbert. Submitted. List of figures 2.1 Plot of binary entropy..............................7 2.2 Venn diagram of Shannon’s information measures............ 10 3.1 Computation of the normalized compression distance using an image compressor.................................... - 
												
												3 Autocorrelation
3 Autocorrelation Autocorrelation refers to the correlation of a time series with its own past and future values. Autocorrelation is also sometimes called “lagged correlation” or “serial correlation”, which refers to the correlation between members of a series of numbers arranged in time. Positive autocorrelation might be considered a specific form of “persistence”, a tendency for a system to remain in the same state from one observation to the next. For example, the likelihood of tomorrow being rainy is greater if today is rainy than if today is dry. Geophysical time series are frequently autocorrelated because of inertia or carryover processes in the physical system. For example, the slowly evolving and moving low pressure systems in the atmosphere might impart persistence to daily rainfall. Or the slow drainage of groundwater reserves might impart correlation to successive annual flows of a river. Or stored photosynthates might impart correlation to successive annual values of tree-ring indices. Autocorrelation complicates the application of statistical tests by reducing the effective sample size. Autocorrelation can also complicate the identification of significant covariance or correlation between time series (e.g., precipitation with a tree-ring series). Autocorrelation implies that a time series is predictable, probabilistically, as future values are correlated with current and past values. Three tools for assessing the autocorrelation of a time series are (1) the time series plot, (2) the lagged scatterplot, and (3) the autocorrelation function. 3.1 Time series plot Positively autocorrelated series are sometimes referred to as persistent because positive departures from the mean tend to be followed by positive depatures from the mean, and negative departures from the mean tend to be followed by negative departures (Figure 3.1). - 
												
												Combinatorial Reasoning in Information Theory
Combinatorial Reasoning in Information Theory Noga Alon, Tel Aviv U. ISIT 2009 1 Combinatorial Reasoning is crucial in Information Theory Google lists 245,000 sites with the words “Information Theory ” and “ Combinatorics ” 2 The Shannon Capacity of Graphs The (and) product G x H of two graphs G=(V,E) and H=(V’,E’) is the graph on V x V’, where (v,v’) = (u,u’) are adjacent iff (u=v or uv є E) and (u’=v’ or u’v’ є E’) The n-th power Gn of G is the product of n copies of G. 3 Shannon Capacity Let α ( G n ) denote the independence number of G n. The Shannon capacity of G is n 1/n n 1/n c(G) = lim [α(G )] ( = supn[α(G )] ) n →∞ 4 Motivation output input A channel has an input set X, an output set Y, and a fan-out set S Y for each x X. x ⊂ ∈ The graph of the channel is G=(X,E), where xx’ є E iff x,x’ can be confused , that is, iff S S = x ∩ x′ ∅ 5 α(G) = the maximum number of distinct messages the channel can communicate in a single use (with no errors) α(Gn)= the maximum number of distinct messages the channel can communicate in n uses. c(G) = the maximum number of messages per use the channel can communicate (with long messages) 6 There are several upper bounds for the Shannon Capacity: Combinatorial [ Shannon(56)] Geometric [ Lovász(79), Schrijver (80)] Algebraic [Haemers(79), A (98)] 7 Theorem (A-98): For every k there are graphs G and H so that c(G), c(H) ≤ k and yet c(G + H) kΩ(log k/ log log k) ≥ where G+H is the disjoint union of G and H. - 
												
												2020 SIGACT REPORT SIGACT EC – Eric Allender, Shuchi Chawla, Nicole Immorlica, Samir Khuller (Chair), Bobby Kleinberg September 14Th, 2020
2020 SIGACT REPORT SIGACT EC – Eric Allender, Shuchi Chawla, Nicole Immorlica, Samir Khuller (chair), Bobby Kleinberg September 14th, 2020 SIGACT Mission Statement: The primary mission of ACM SIGACT (Association for Computing Machinery Special Interest Group on Algorithms and Computation Theory) is to foster and promote the discovery and dissemination of high quality research in the domain of theoretical computer science. The field of theoretical computer science is the rigorous study of all computational phenomena - natural, artificial or man-made. This includes the diverse areas of algorithms, data structures, complexity theory, distributed computation, parallel computation, VLSI, machine learning, computational biology, computational geometry, information theory, cryptography, quantum computation, computational number theory and algebra, program semantics and verification, automata theory, and the study of randomness. Work in this field is often distinguished by its emphasis on mathematical technique and rigor. 1. Awards ▪ 2020 Gödel Prize: This was awarded to Robin A. Moser and Gábor Tardos for their paper “A constructive proof of the general Lovász Local Lemma”, Journal of the ACM, Vol 57 (2), 2010. The Lovász Local Lemma (LLL) is a fundamental tool of the probabilistic method. It enables one to show the existence of certain objects even though they occur with exponentially small probability. The original proof was not algorithmic, and subsequent algorithmic versions had significant losses in parameters. This paper provides a simple, powerful algorithmic paradigm that converts almost all known applications of the LLL into randomized algorithms matching the bounds of the existence proof. The paper further gives a derandomized algorithm, a parallel algorithm, and an extension to the “lopsided” LLL. - 
												
												The Bayesian Approach to Statistics
THE BAYESIAN APPROACH TO STATISTICS ANTHONY O’HAGAN INTRODUCTION the true nature of scientific reasoning. The fi- nal section addresses various features of modern By far the most widely taught and used statisti- Bayesian methods that provide some explanation for the rapid increase in their adoption since the cal methods in practice are those of the frequen- 1980s. tist school. The ideas of frequentist inference, as set out in Chapter 5 of this book, rest on the frequency definition of probability (Chapter 2), BAYESIAN INFERENCE and were developed in the first half of the 20th century. This chapter concerns a radically differ- We first present the basic procedures of Bayesian ent approach to statistics, the Bayesian approach, inference. which depends instead on the subjective defini- tion of probability (Chapter 3). In some respects, Bayesian methods are older than frequentist ones, Bayes’s Theorem and the Nature of Learning having been the basis of very early statistical rea- Bayesian inference is a process of learning soning as far back as the 18th century. Bayesian from data. To give substance to this statement, statistics as it is now understood, however, dates we need to identify who is doing the learning and back to the 1950s, with subsequent development what they are learning about. in the second half of the 20th century. Over that time, the Bayesian approach has steadily gained Terms and Notation ground, and is now recognized as a legitimate al- ternative to the frequentist approach. The person doing the learning is an individual This chapter is organized into three sections. - 
												
												Information Theory for Intelligent People
Information Theory for Intelligent People Simon DeDeo∗ September 9, 2018 Contents 1 Twenty Questions 1 2 Sidebar: Information on Ice 4 3 Encoding and Memory 4 4 Coarse-graining 5 5 Alternatives to Entropy? 7 6 Coding Failure, Cognitive Surprise, and Kullback-Leibler Divergence 7 7 Einstein and Cromwell's Rule 10 8 Mutual Information 10 9 Jensen-Shannon Distance 11 10 A Note on Measuring Information 12 11 Minds and Information 13 1 Twenty Questions The story of information theory begins with the children's game usually known as \twenty ques- tions". The first player (the \adult") in this two-player game thinks of something, and by a series of yes-no questions, the other player (the \child") attempts to guess what it is. \Is it bigger than a breadbox?" No. \Does it have fur?" Yes. \Is it a mammal?" No. And so forth. If you play this game for a while, you learn that some questions work better than others. Children usually learn that it's a good idea to eliminate general categories first before becoming ∗Article modified from text for the Santa Fe Institute Complex Systems Summer School 2012, and updated for a meeting of the Indiana University Center for 18th Century Studies in 2015, a Colloquium at Tufts University Department of Cognitive Science on Play and String Theory in 2016, and a meeting of the SFI ACtioN Network in 2017. Please send corrections, comments and feedback to [email protected]; http://santafe.edu/~simon. 1 more specific, for example. If you ask on the first round \is it a carburetor?" you are likely wasting time|unless you're playing the game on Car Talk. - 
												
												An Information-Theoretic Approach to Normal Forms for Relational and XML Data
An Information-Theoretic Approach to Normal Forms for Relational and XML Data Marcelo Arenas Leonid Libkin University of Toronto University of Toronto [email protected] [email protected] ABSTRACT Several papers [13, 28, 18] attempted a more formal eval- uation of normal forms, by relating it to the elimination Normalization as a way of producing good database de- of update anomalies. Another criterion is the existence signs is a well-understood topic. However, the same prob- of algorithms that produce good designs: for example, we lem of distinguishing well-designed databases from poorly know that every database scheme can be losslessly decom- designed ones arises in other data models, in particular, posed into one in BCNF, but some constraints may be lost XML. While in the relational world the criteria for be- along the way. ing well-designed are usually very intuitive and clear to state, they become more obscure when one moves to more The previous work was specific for the relational model. complex data models. As new data formats such as XML are becoming critically important, classical database theory problems have to be Our goal is to provide a set of tools for testing when a revisited in the new context [26, 24]. However, there is condition on a database design, specified by a normal as yet no consensus on how to address the problem of form, corresponds to a good design. We use techniques well-designed data in the XML setting [10, 3]. of information theory, and define a measure of informa- tion content of elements in a database with respect to a set It is problematic to evaluate XML normal forms based of constraints. - 
												
												1 Applications of Information Theory to Biology Information Theory Offers A
Pacific Symposium on Biocomputing 5:597-598 (2000) Applications of Information Theory to Biology T. Gregory Dewey Keck Graduate Institute of Applied Life Sciences 535 Watson Drive, Claremont CA 91711, USA Hanspeter Herzel Innovationskolleg Theoretische Biologie, HU Berlin, Invalidenstrasse 43, D-10115, Berlin, Germany Information theory offers a number of fertile applications to biology. These applications range from statistical inference to foundational issues. There are a number of statistical analysis tools that can be considered information theoretical techniques. Such techniques have been the topic of PSB session tracks in 1998 and 1999. The two main tools are algorithmic complexity (including both MML and MDL) and maximum entropy. Applications of MML include sequence searching and alignment, phylogenetic trees, structural classes in proteins, protein potentials, calcium and neural spike dynamics and DNA structure. Maximum entropy methods have appeared in nucleotide sequence analysis (Cosmi et al., 1990), protein dynamics (Steinbach, 1996), peptide structure (Zal et al., 1996) and drug absorption (Charter, 1991). Foundational aspects of information theory are particularly relevant in several areas of molecular biology. Well-studied applications are the recognition of DNA binding sites (Schneider 1986), multiple alignment (Altschul 1991) or gene-finding using a linguistic approach (Dong & Searls 1994). Calcium oscillations and genetic networks have also been studied with information-theoretic tools. In all these cases, the information content of the system or phenomena is of intrinsic interest in its own right. In the present symposium, we see three applications of information theory that involve some aspect of sequence analysis. In all three cases, fundamental information-theoretical properties of the problem of interest are used to develop analyses of practical importance. - 
												
												A Review of Graph and Network Complexity from an Algorithmic Information Perspective
entropy Review A Review of Graph and Network Complexity from an Algorithmic Information Perspective Hector Zenil 1,2,3,4,5,*, Narsis A. Kiani 1,2,3,4 and Jesper Tegnér 2,3,4,5 1 Algorithmic Dynamics Lab, Centre for Molecular Medicine, Karolinska Institute, 171 77 Stockholm, Sweden; [email protected] 2 Unit of Computational Medicine, Department of Medicine, Karolinska Institute, 171 77 Stockholm, Sweden; [email protected] 3 Science for Life Laboratory (SciLifeLab), 171 77 Stockholm, Sweden 4 Algorithmic Nature Group, Laboratoire de Recherche Scientifique (LABORES) for the Natural and Digital Sciences, 75005 Paris, France 5 Biological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia * Correspondence: [email protected] or [email protected] Received: 21 June 2018; Accepted: 20 July 2018; Published: 25 July 2018 Abstract: Information-theoretic-based measures have been useful in quantifying network complexity. Here we briefly survey and contrast (algorithmic) information-theoretic methods which have been used to characterize graphs and networks. We illustrate the strengths and limitations of Shannon’s entropy, lossless compressibility and algorithmic complexity when used to identify aspects and properties of complex networks. We review the fragility of computable measures on the one hand and the invariant properties of algorithmic measures on the other demonstrating how current approaches to algorithmic complexity are misguided and suffer of similar limitations than traditional statistical approaches such as Shannon entropy. Finally, we review some current definitions of algorithmic complexity which are used in analyzing labelled and unlabelled graphs. This analysis opens up several new opportunities to advance beyond traditional measures. - 
												
												Introduction to Bayesian Inference and Modeling Edps 590BAY
Introduction to Bayesian Inference and Modeling Edps 590BAY Carolyn J. Anderson Department of Educational Psychology c Board of Trustees, University of Illinois Fall 2019 Introduction What Why Probability Steps Example History Practice Overview ◮ What is Bayes theorem ◮ Why Bayesian analysis ◮ What is probability? ◮ Basic Steps ◮ An little example ◮ History (not all of the 705+ people that influenced development of Bayesian approach) ◮ In class work with probabilities Depending on the book that you select for this course, read either Gelman et al. Chapter 1 or Kruschke Chapters 1 & 2. C.J. Anderson (Illinois) Introduction Fall 2019 2.2/ 29 Introduction What Why Probability Steps Example History Practice Main References for Course Throughout the coures, I will take material from ◮ Gelman, A., Carlin, J.B., Stern, H.S., Dunson, D.B., Vehtari, A., & Rubin, D.B. (20114). Bayesian Data Analysis, 3rd Edition. Boco Raton, FL, CRC/Taylor & Francis.** ◮ Hoff, P.D., (2009). A First Course in Bayesian Statistical Methods. NY: Sringer.** ◮ McElreath, R.M. (2016). Statistical Rethinking: A Bayesian Course with Examples in R and Stan. Boco Raton, FL, CRC/Taylor & Francis. ◮ Kruschke, J.K. (2015). Doing Bayesian Data Analysis: A Tutorial with JAGS and Stan. NY: Academic Press.** ** There are e-versions these of from the UofI library. There is a verson of McElreath, but I couldn’t get if from UofI e-collection. C.J. Anderson (Illinois) Introduction Fall 2019 3.3/ 29 Introduction What Why Probability Steps Example History Practice Bayes Theorem A whole semester on this? p(y|θ)p(θ) p(θ|y)= p(y) where ◮ y is data, sample from some population. - 
												
												Autocorrelation
Autocorrelation David Gerbing School of Business Administration Portland State University January 30, 2016 Autocorrelation The difference between an actual data value and the forecasted data value from a model is the residual for that forecasted value. Residual: ei = Yi − Y^i One of the assumptions of the least squares estimation procedure for the coefficients of a regression model is that the residuals are purely random. One consequence of randomness is that the residuals would not correlate with anything else, including with each other at different time points. A value above the mean, that is, a value with a positive residual, would contain no information as to whether the next value in time would have a positive residual, or negative residual, with a data value below the mean. For example, flipping a fair coin yields random flips, with half of the flips resulting in a Head and the other half a Tail. If a Head is scored as a 1 and a Tail as a 0, and the probability of both Heads and Tails is 0.5, then calculate the value of the population mean as: Population Mean: µ = (0:5)(1) + (0:5)(0) = :5 The forecast of the outcome of the next flip of a fair coin is the mean of the process, 0.5, which is stable over time. What are the corresponding residuals? A residual value is the difference of the corresponding data value minus the mean. With this scoring system, a Head generates a positive residual from the mean, µ, Head: ei = 1 − µ = 1 − 0:5 = 0:5 A Tail generates a negative residual from the mean, Tail: ei = 0 − µ = 0 − 0:5 = −0:5 The error terms of the coin flips are independent of each other, so if the current flip is a Head, or if the last 5 flips are Heads, the forecast for the next flip is still µ = :5. - 
												
												Efficient Space-Time Sampling with Pixel-Wise Coded Exposure For
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 1 Efficient Space-Time Sampling with Pixel-wise Coded Exposure for High Speed Imaging Dengyu Liu, Jinwei Gu, Yasunobu Hitomi, Mohit Gupta, Tomoo Mitsunaga, Shree K. Nayar Abstract—Cameras face a fundamental tradeoff between spatial and temporal resolution. Digital still cameras can capture images with high spatial resolution, but most high-speed video cameras have relatively low spatial resolution. It is hard to overcome this tradeoff without incurring a significant increase in hardware costs. In this paper, we propose techniques for sampling, representing and reconstructing the space-time volume in order to overcome this tradeoff. Our approach has two important distinctions compared to previous works: (1) we achieve sparse representation of videos by learning an over-complete dictionary on video patches, and (2) we adhere to practical hardware constraints on sampling schemes imposed by architectures of current image sensors, which means that our sampling function can be implemented on CMOS image sensors with modified control units in the future. We evaluate components of our approach - sampling function and sparse representation by comparing them to several existing approaches. We also implement a prototype imaging system with pixel-wise coded exposure control using a Liquid Crystal on Silicon (LCoS) device. System characteristics such as field of view, Modulation Transfer Function (MTF) are evaluated for our imaging system. Both simulations and experiments on a wide range of