Late Cenozoic Yushe Basin, Shanxi Province, China
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Blind Mole Rat (Spalax Leucodon) Masseter Muscle: Structure, Homology, Diversification and Nomenclature A
Folia Morphol. Vol. 78, No. 2, pp. 419–424 DOI: 10.5603/FM.a2018.0097 O R I G I N A L A R T I C L E Copyright © 2019 Via Medica ISSN 0015–5659 journals.viamedica.pl Blind mole rat (Spalax leucodon) masseter muscle: structure, homology, diversification and nomenclature A. Yoldas1, M. Demir1, R. İlgun2, M.O. Dayan3 1Department of Anatomy, Faculty of Medicine, Kahramanmaras University, Kahramanmaras, Turkey 2Department of Anatomy, Faculty of Veterinary Medicine, Aksaray University, Aksaray, Turkey 3Department of Anatomy, Faculty of Veterinary Medicine, Selcuk University, Konya, Turkey [Received: 10 July 2018; Accepted: 23 September 2018] Background: It is well known that rodents are defined by a unique masticatory apparatus. The present study describes the design and structure of the masseter muscle of the blind mole rat (Spalax leucodon). The blind mole rat, which emer- ged 5.3–3.4 million years ago during the Late Pliocene period, is a subterranean, hypoxia-tolerant and cancer-resistant rodent. Yet, despite these impressive cha- racteristics, no information exists on their masticatory musculature. Materials and methods: Fifteen adult blind mole rats were used in this study. Dissections were performed to investigate the anatomical characteristics of the masseter muscle. Results: The muscle was comprised of three different parts: the superficial mas- seter, the deep masseter and the zygomaticomandibularis muscle. The superficial masseter originated from the facial fossa at the ventral side of the infraorbital foramen. The deep masseter was separated into anterior and posterior parts. The anterior part of the zygomaticomandibularis muscle arose from the snout and passed through the infraorbital foramen to connect on the mandible. -
Seismic Communication Signals in the Blind Mole-Rat (Spalax Ehrenbergi ): Electrophysiological and Behavioral Evidence for Their Processing by the Auditory System
J Comp Physiol A (1998) 183: 503±511 Ó Springer-Verlag 1998 ORIGINAL PAPER R. Rado á J. Terkel á Z. Wollberg Seismic communication signals in the blind mole-rat (Spalax ehrenbergi ): electrophysiological and behavioral evidence for their processing by the auditory system Accepted: 11 May 1998 Abstract Based on morphological and behavioral ®nd- ings we suggest that the seismic vibratory signals that Introduction blind mole-rats (Spalax ehrenbergi) use for intraspeci®c communication are picked up from the substrate by The blind mole-rat, Spalax ehrenbergi, is a subterranean bone conduction and processed by the auditory system. rodent that shows striking behavioral, morphological An alternative hypothesis, raised by others, suggest that and physiological adaptations to fossorial life (Nevo these signals are processed by the somatosensory sys- 1979, 1982). It is a highly solitary species that digs its tem. We show here that brain stem and middle latency tunnel system to its own size, and which it never leaves responses evoked by vibrations are similar to those unless forced to (Nevo 1961). Encounters between in- evoked by high-intensity airborne clicks but are larger in dividuals are very rare and are limited to the mating their amplitudes, especially when the lower jaw is in season, to contacts between mother and pups, and to close contact with the vibrating substrate. Bilateral incidental intrusion of an individual to a foreign tunnel deafening of the mole-rat or high-intensity masking system. noise almost completely eliminated these responses. We and others have shown that for long-distance Deafening also gradually reduced head-drumming be- communication this subterranean rodent uses vibratory havior until its complete elimination about 4±6 weeks (seismic) signals that are produced by rapidly tapping its after surgery. -
Comparative Analyses of Past Population Dynamics Between Two Subterranean Zokor Species and the Response to Climate Changes
Turkish Journal of Zoology Turk J Zool (2013) 37: 143-148 http://journals.tubitak.gov.tr/zoology/ © TÜBİTAK Research Article doi:10.3906/zoo-1204-18 Comparative analyses of past population dynamics between two subterranean zokor species and the response to climate changes 1 1 1 1 1 1 Lizhou TANG , Long YU , Weidong LU , Junjie WANG , Mei MA , Xiaodong SHI , 1, 2 Jiangang CHEN *, Tongzuo ZHANG 1 College of Biologic Resource and Environmental Science, Qujing Normal University, Qujing, Yunnan 655011, China 2 Key Laboratory of the Qinghai-Tibetan Plateau Ecosystem and Biological Evolution and Adaptation, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, Qinghai 810001, China Received: 16.04.2012 Accepted: 21.09.2012 Published Online: 25.02.2013 Printed: 25.03.2013 Abstract: The mitochondrial cytochrome b sequences of 34 haplotypes from 114 individuals of Eospalax baileyi and GenBank data of 40 haplotypes from 121 individuals of Eospalax cansus were used to investigate if the Quaternary glaciations on the Qinghai-Tibetan Plateau (QTP) influenced the distribution and colonisation of these 2 species, and if both species presented congruous past population dynamics. The phylogenetic tree indicated a valid status for the genera Eospalax and Myospalax, and an independent species status for E. baileyi and E. cansus. The demographical population history of E. baileyi showed that the effective population size remained stable between 1.00 and 0.50 million years ago (Mya), increased quickly to a peak and fluctuated dramatically between 0.50 and 0.20 Mya, after which a stable level was maintained from 0.20 Mya to the present. -
Transcriptome Analysis of the Liver of Eospalax Fontanierii Under Hypoxia
Transcriptome Analysis of the Liver of Eospalax Fontanierii Under Hypoxia Zhiqiang Hao Shaanxi Normal University College of Life Sciences Lulu Xu Shaanxi Normal University College of Life Sciences Jianping He Shaanxi Normal University College of Life Sciences Guanglin Li Shaanxi Normal University College of Life Sciences Jingang Li ( [email protected] ) Shaanxi Normal University https://orcid.org/0000-0002-5664-0715 Research Keywords: Hypoxia adaptation, Eospalax fontanierii, transcriptome Posted Date: September 15th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-74186/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/27 Abstract Background Hypoxia can induce cell damage, inammation, carcinogenesis, and inhibit liver regeneration in non- adapted species. Because of their excellent hypoxia adaptation features, subterranean rodents have been widely studied to clarify the mechanism of hypoxia adaptation. Eospalax fontanierii, which is a subterranean rodent found in China, can survive for more than 10 h under 4% O2 without observable injury, while Sprague-Dawle rats can survive for less than 6 h under the same conditions. To explore the potential mechanism of hypoxia adaptation in E. fontanierii, we performed RNA-seq analysis of the liver in E. fontanierii exposed to different oxygen levels (6.5%, 10.5%, and 21%). Results Based on the bioinformatics analysis, 39,439 unigenes were assembled, and 56.78% unigenes were annotated using public databases (Nr, GO, Swiss-Prot, KEGG, and Pfam). In total, 725 differentially expressed genes (DEGs) were identied in the response to hypoxia; six with important functions were validated by qPCR. -
Controlled Animals
Environment and Sustainable Resource Development Fish and Wildlife Policy Division Controlled Animals Wildlife Regulation, Schedule 5, Part 1-4: Controlled Animals Subject to the Wildlife Act, a person must not be in possession of a wildlife or controlled animal unless authorized by a permit to do so, the animal was lawfully acquired, was lawfully exported from a jurisdiction outside of Alberta and was lawfully imported into Alberta. NOTES: 1 Animals listed in this Schedule, as a general rule, are described in the left hand column by reference to common or descriptive names and in the right hand column by reference to scientific names. But, in the event of any conflict as to the kind of animals that are listed, a scientific name in the right hand column prevails over the corresponding common or descriptive name in the left hand column. 2 Also included in this Schedule is any animal that is the hybrid offspring resulting from the crossing, whether before or after the commencement of this Schedule, of 2 animals at least one of which is or was an animal of a kind that is a controlled animal by virtue of this Schedule. 3 This Schedule excludes all wildlife animals, and therefore if a wildlife animal would, but for this Note, be included in this Schedule, it is hereby excluded from being a controlled animal. Part 1 Mammals (Class Mammalia) 1. AMERICAN OPOSSUMS (Family Didelphidae) Virginia Opossum Didelphis virginiana 2. SHREWS (Family Soricidae) Long-tailed Shrews Genus Sorex Arboreal Brown-toothed Shrew Episoriculus macrurus North American Least Shrew Cryptotis parva Old World Water Shrews Genus Neomys Ussuri White-toothed Shrew Crocidura lasiura Greater White-toothed Shrew Crocidura russula Siberian Shrew Crocidura sibirica Piebald Shrew Diplomesodon pulchellum 3. -
Downloaded from Ensembl (Www
Lin et al. BMC Genomics 2014, 15:32 http://www.biomedcentral.com/1471-2164/15/32 RESEARCH ARTICLE Open Access Transcriptome sequencing and phylogenomic resolution within Spalacidae (Rodentia) Gong-Hua Lin1, Kun Wang2, Xiao-Gong Deng1,3, Eviatar Nevo4, Fang Zhao1, Jian-Ping Su1, Song-Chang Guo1, Tong-Zuo Zhang1* and Huabin Zhao5* Abstract Background: Subterranean mammals have been of great interest for evolutionary biologists because of their highly specialized traits for the life underground. Owing to the convergence of morphological traits and the incongruence of molecular evidence, the phylogenetic relationships among three subfamilies Myospalacinae (zokors), Spalacinae (blind mole rats) and Rhizomyinae (bamboo rats) within the family Spalacidae remain unresolved. Here, we performed de novo transcriptome sequencing of four RNA-seq libraries prepared from brain and liver tissues of a plateau zokor (Eospalax baileyi) and a hoary bamboo rat (Rhizomys pruinosus), and analyzed the transcriptome sequences alongside a published transcriptome of the Middle East blind mole rat (Spalax galili). We characterize the transcriptome assemblies of the two spalacids, and recover the phylogeny of the three subfamilies using a phylogenomic approach. Results: Approximately 50.3 million clean reads from the zokor and 140.8 million clean reads from the bamboo ratwere generated by Illumina paired-end RNA-seq technology. All clean reads were assembled into 138,872 (the zokor) and 157,167 (the bamboo rat) unigenes, which were annotated by the public databases: the Swiss-prot, Trembl, NCBI non-redundant protein (NR), NCBI nucleotide sequence (NT), Gene Ontology (GO), Cluster of Orthologous Groups (COG), and Kyoto Encyclopedia of Genes and Genomes (KEGG). -
Checklist of Rodents and Insectivores of the Mordovia, Russia
ZooKeys 1004: 129–139 (2020) A peer-reviewed open-access journal doi: 10.3897/zookeys.1004.57359 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Checklist of rodents and insectivores of the Mordovia, Russia Alexey V. Andreychev1, Vyacheslav A. Kuznetsov1 1 Department of Zoology, National Research Mordovia State University, Bolshevistskaya Street, 68. 430005, Saransk, Russia Corresponding author: Alexey V. Andreychev ([email protected]) Academic editor: R. López-Antoñanzas | Received 7 August 2020 | Accepted 18 November 2020 | Published 16 December 2020 http://zoobank.org/C127F895-B27D-482E-AD2E-D8E4BDB9F332 Citation: Andreychev AV, Kuznetsov VA (2020) Checklist of rodents and insectivores of the Mordovia, Russia. ZooKeys 1004: 129–139. https://doi.org/10.3897/zookeys.1004.57359 Abstract A list of 40 species is presented of the rodents and insectivores collected during a 15-year period from the Republic of Mordovia. The dataset contains more than 24,000 records of rodent and insectivore species from 23 districts, including Saransk. A major part of the data set was obtained during expedition research and at the biological station. The work is based on the materials of our surveys of rodents and insectivo- rous mammals conducted in Mordovia using both trap lines and pitfall arrays using traditional methods. Keywords Insectivores, Mordovia, rodents, spatial distribution Introduction There is a need to review the species composition of rodents and insectivores in all regions of Russia, and the work by Tovpinets et al. (2020) on the Crimean Peninsula serves as an example of such research. Studies of rodent and insectivore diversity and distribution have a long history, but there are no lists for many regions of Russia of Copyright A.V. -
Lipotyphla: Talpidae: Euroscaptor)
Proceedings of the Zoological Institute RAS Vol. 320, No. 2, 2016, рр. 193–220 УДК 599.362 (597) SECRETS OF THE UNDERGROUND VIETNAM: AN UNDERESTIMATED SPECIES DIVERSITY OF ASIAN MOLES (LIPOTYPHLA: TALPIDAE: EUROSCAPTOR) E.D. Zemlemerova1, A.A. Bannikova1, V.S. Lebedev2, V.V. Rozhnov3, 5 and A.V. Abramov4, 5* 1Lomonosov Moscow State University, Vorobievy Gory, 119991 Moscow, Russia; e-mails: [email protected], [email protected] 2Zoological Museum, Moscow State University, B. Nikitskaya 6, 125009 Moscow, Russia; e-mail: [email protected] 3A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskii pr. 33, Moscow 119071, Russia; e-mail: [email protected] 4Zoological Institute, Russian Academy of Sciences, Universitetskaya nab. 1, 199034 Saint Petersburg, Russia; e-mail: [email protected] 5Joint Vietnam-Russian Tropical Research and Technological Centre, Nguyen Van Huyen, Nghia Do, Cau Giay, Hanoi, Vietnam ABSTRACT A study of the Southeast Asian moles of the genus Euroscaptor based on a combined approach, viz. DNA sequence data combined with a multivariate analysis of cranial characters, has revealed a high cryptic diversity of the group. An analysis of mitochondrial cytochrome b gene and five nuclear genes has revealed two deeply divergent clades: the western one (E. klossi + E. malayana + E. longirostris from Sichuan + Euroscaptor spp. from northern Vietnam and Yunnan, China), and the eastern one (E. parvidens s.l. + E. subanura). The pattern of genetic variation in the genus Euroscaptor discovered in the present study provides support for the existence of several cryptic lineages that could be treated as distinct species based on their genetic and morphological distinctness and geographical distribution. -
Tissue Specific Regulatory Network Annotation for Non-Coding Elements
Quantitative Biology 2020, 8(1): 43–50 https://doi.org/10.1007/s40484-020-0195-4 RESEARCH ARTICLE ZokorDB: tissue specificregulatorynetwork annotation for non-coding elements of plateau zokor Jingxue Xin1,6,7,†, Junjun Hao2,†, Lang Chen1, Tao Zhang3, Lei Li1,5,7, Luonan Chen3,5, Wenmin Zhao4, Xuemei Lu2,5, Peng Shi2,5,*, Yong Wang1,5,7,* 1 CEMS, NCMIS, MDIS, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China 2 State Key Laboratory of Genetic Resources and Evolution, Laboratory of Evolutionary and Functional Genomics, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China 3 Key Laboratory of Systems Biology, Innovation Center for Cell Signaling Network, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China 4 Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 5 Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650223, China 6 Department of Statistics, Department of Biomedical Data Science, Bio-X Program, Stanford University, Stanford, CA 94305, USA 7 University of Chinese Academy of Sciences, Beijing 100049, China * Correspondence: [email protected], [email protected] Received September 4, 2019; Revised December 16, 2019; Accepted December 23, 2019 Background: Plateau zokor inhabits in sealed burrows from 2,000 to 4,200 meters at Qinghai-Tibet Plateau. This extreme living environment makes it a great model to study animal adaptation to hypoxia, low temperature, and high carbon dioxide concentration. Methods: We provide an integrated resource, ZokorDB, for tissue specific regulatory network annotation for zokor. -
Comparative Phylogeography of the Plateau Zokor (Eospalax Baileyi
Lin et al. BMC Evolutionary Biology 2014, 14:180 http://www.biomedcentral.com/1471-2148/14/180 RESEARCH ARTICLE Open Access Comparative phylogeography of the plateau zokor (Eospalax baileyi) and its host-associated flea (Neopsylla paranoma) in the Qinghai-Tibet Plateau Gonghua Lin1, Fang Zhao1,2, Hongjian Chen3, Xiaogong Deng1,2, Jianping Su1 and Tongzuo Zhang1* Abstract Background: Specific host-parasite systems often embody a particular co-distribution phenomenon, in which the parasite’s phylogeographic pattern is dependent on its host. In practice, however, both congruent and incongruent phylogeographic patterns between the host and the parasite have been reported. Here, we compared the population genetics of the plateau zokor (Eospalax baileyi), a subterranean rodent, and its host-associated flea species, Neopsylla paranoma, with an aim to determine whether the two animals share a similar phylogeographic pattern. Results: We sampled 130 host-parasite pairs from 17 localities in the Qinghai-Tibet Plateau (QTP), China, and sequenced a mitochondrial DNA (mtDNA) segment (~2,500 bp), including the complete COI and COII genes. We also detected 55 zokor and 75 flea haplotypes. AMOVA showed that the percentage of variation among the populations of zokors constituted 97.10%, while the within population variation was only 2.90%; for fleas, the values were 85.68% and 14.32%, respectively. Moreover, the flea Fst (fixation index) values were significantly smaller than in zokor. Although the Fst values between zokors and fleas were significantly and positively correlated (N =105, R =0.439, p =0.000), only a small amount (R2= 0.19) of the flea Fst variations could be explained by the zokor Fst variations. -
Project Information Document
Global coordination project for the SFM Drylands Impact Program Part I: Project Information Name of Parent Program Sustainable Forest Management Impact Program on Dryland Sustainable Landscapes GEF ID 10253 Project Type FSP Type of Trust Fund GET CBIT/NGI CBIT NGI Project Title Global coordination project for the SFM Drylands Impact Program Countries Global Agency(ies) FAO Other Executing Partner(s): IUCN Executing Partner Type GEF Agency GEF Focal Area Multi Focal Area Taxonomy Focal Areas, Climate Change, Climate Change Mitigation, Agriculture, Forestry, and Other Land Use, Technology Transfer, Financing, Forest, Forest and Landscape Restoration, REDD - REDD+, Drylands, Biodiversity, Protected Areas and Landscapes, Productive Landscapes, Terrestrial Protected Areas, Community Based Natural Resource Mngt, Mainstreaming, Forestry - Including HCVF and REDD+, Agriculture and agrobiodiversity, Biomes, Tropical Dry Forests, Desert, Grasslands, Financial and Accounting, Conservation Finance, Payment for Ecosystem Services, Land Degradation, Sustainable Land Management, Sustainable Pasture Management, Improved Soil and Water Management Techniques, Integrated and Cross- sectoral approach, Community-Based Natural Resource Management, Income Generating Activities, Sustainable Forest, Ecosystem Approach, Sustainable Fire Management, Sustainable Livelihoods, Restoration and Rehabilitation of Degraded Lands, Sustainable Agriculture, Drought Mitigation, Land Degradation Neutrality, Land Cover and Land cover change, Land Productivity, Carbon stocks -
Micheal L. Dent Richard R. Fay Arthur N. Popper Editors Rodent Bioacoustics Springer Handbook of Auditory Research
Springer Handbook of Auditory Research Micheal L. Dent Richard R. Fay Arthur N. Popper Editors Rodent Bioacoustics Springer Handbook of Auditory Research Volume 67 Series Editor Richard R. Fay, Ph.D., Loyola University Chicago, Chicago, IL, USA Arthur N. Popper, Ph.D., University of Maryland, College Park, MD, USA Editorial Board Karen Avraham, Ph.D., Tel Aviv University, Israel Andrew Bass, Ph.D., Cornell University Lisa Cunningham, Ph.D., National Institutes of Health Bernd Fritzsch, Ph.D., University of Iowa Andrew Groves, Ph.D., Baylor University Ronna Hertzano, M.D., Ph.D., School of Medicine, University of Maryland Colleen Le Prell, Ph.D., University of Texas, Dallas Ruth Litovsky, Ph.D., University of Wisconsin Paul Manis, Ph.D., University of North Carolina Geoffrey Manley, Ph.D., University of Oldenburg, Germany Brian Moore, Ph.D., Cambridge University, UK Andrea Simmons, Ph.D., Brown University William Yost, Ph.D., Arizona State University More information about this series at http://www.springer.com/series/2506 The ASA Press The ASA Press imprint represents a collaboration between the Acoustical Society of America and Springer dedicated to encouraging the publication of important new books in acoustics. Published titles are intended to reflect the full range of research in acoustics. ASA Press books can include all types of books published by Springer and may appear in any appropriate Springer book series. Editorial Board Mark F. Hamilton (Chair), University of Texas at Austin James Cottingham, Coe College Diana Deutsch, University of California, San Diego Timothy F. Duda, Woods Hole Oceanographic Institution Robin Glosemeyer Petrone, Threshold Acoustics William M.