With Emphasis on HER2-Positive Breast Cancer
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Machine-Learning and Chemicogenomics Approach Defi Nes and Predicts Cross-Talk of Hippo and MAPK Pathways
Published OnlineFirst November 18, 2020; DOI: 10.1158/2159-8290.CD-20-0706 RESEARCH ARTICLE Machine -Learning and Chemicogenomics Approach Defi nes and Predicts Cross-Talk of Hippo and MAPK Pathways Trang H. Pham 1 , Thijs J. Hagenbeek 1 , Ho-June Lee 1 , Jason Li 2 , Christopher M. Rose 3 , Eva Lin 1 , Mamie Yu 1 , Scott E. Martin1 , Robert Piskol 2 , Jennifer A. Lacap 4 , Deepak Sampath 4 , Victoria C. Pham 3 , Zora Modrusan 5 , Jennie R. Lill3 , Christiaan Klijn 2 , Shiva Malek 1 , Matthew T. Chang 2 , and Anwesha Dey 1 ABSTRACT Hippo pathway dysregulation occurs in multiple cancers through genetic and non- genetic alterations, resulting in translocation of YAP to the nucleus and activation of the TEAD family of transcription factors. Unlike other oncogenic pathways such as RAS, defi ning tumors that are Hippo pathway–dependent is far more complex due to the lack of hotspot genetic alterations. Here, we developed a machine-learning framework to identify a robust, cancer type–agnostic gene expression signature to quantitate Hippo pathway activity and cross-talk as well as predict YAP/TEAD dependency across cancers. Further, through chemical genetic interaction screens and multiomics analyses, we discover a direct interaction between MAPK signaling and TEAD stability such that knockdown of YAP combined with MEK inhibition results in robust inhibition of tumor cell growth in Hippo dysregulated tumors. This multifaceted approach underscores how computational models combined with experimental studies can inform precision medicine approaches including predictive diagnostics and combination strategies. SIGNIFICANCE: An integrated chemicogenomics strategy was developed to identify a lineage- independent signature for the Hippo pathway in cancers. -
Application of Inkt Cell-Targeted Active Immunotherapy in Cancer
ANTICANCER RESEARCH 38 : 4233-4240 (2018) doi:10.21873/anticanres.12719 Review Application of iNKT Cell-targeted Active Immunotherapy in Cancer Treatment KIMIHIRO YAMASHITA 1, AKIRA ARIMOTO 1, MASAYASU NISHI 1, TOMOKO TANAKA 1, MITSUGU FUJITA 2, EIJI FUKUOKA 1, YUTAKA SUGITA 1, AKIO NAKAGAWA 1, HIROSHI HASEGAWA 1, SATOSHI SUZUKI 1 and YOSHIHIRO KAKEJI 1 1Department of Surgery, Division of Gastrointestinal Surgery, Kobe University Graduate School of Medicine, Kobe, Japan; 2Department of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan Abstract. In tumor immunity, invariant natural killer T a need to demonstrate the effects of combinations with other (iNKT) cells play a pivotal role as a link between the innate types of therapy, including conventional and immunotherapy, and adaptive immune systems. With a precisely regulated as well as treatment that is still being developed. activation mechanism, iNKT cells have the ability to respond Natural killer T (NKT) cell-based immunotherapy is one of quickly to antigenic stimulation and rapidly produce cytokines the most promising types of immunotherapy currently in and chemokines, and subsequently an effective antitumor development. In tumor immunity, the immune systems immune response. The development of iNKT cell-targeted participate in immune surveillance against tumor development active immunotherapy enables, not only an antitumor immune and respond to the foreignness of tumor cells. The innate response through innate and acquired immunity, but also the immune cell population recognizes tumor-associated antigens conversion of an immunosuppressive into an immunogenic and danger signals from tumor cells and responds quickly to microenvironment. This review is focused on the activation them. Effector cells typified by natural killer (NK) cells start mechanism and the role of iNKT cells after therapeutic active to eliminate tumor cells directly. -
Patient Resource Free
PATIENT RESOURCE FREE Third Edition CancerUnderstanding Immunotherapy Published in partnership with CONTENT REVIEWED BY A DISTINGUISHED PRP MEDICAL PATIENT ADVISORY RESOURCE BOARD PUBLISHING® Understanding TABLE OF CONTENTS Cancer Immunotherapy Third Edition IN THIS GUIDE 1 Immunotherapy Today 2 The Immune System 4 Immunotherapy Strategies 6 Melanoma Survivor Story: Jane McNee Chief Executive Officer Mark A. Uhlig I didn’t look sick, so I didn’t want to act sick. Publisher Linette Atwood Having and treating cancer is only one part of your life. Co-Editor-in-Chief Charles M. Balch, MD, FACS Jane McNee, melanoma survivor Co-Editor-in-Chief Howard L. Kaufman, MD, FACS Senior Vice President Debby Easum 7 The Road to Immunotherapy Vice President, Operations Leann Sandifar 8 Cancer Types Managing Editor Lori Alexander, MTPW, ELS, MWC™ 14 Side Effects Senior Editors Dana Campbell Colleen Scherer 15 Glossary Graphic Designer Michael St. George 16 About Clinical Trials Medical Illustrator Todd Smith 16 Cancer Immunotherapy Clinical Trials by Disease Production Manager Jennifer Hiltunen 35 Support & Financial Resources Vice Presidents, Amy Galey Business Development Kathy Hungerford 37 Notes Stephanie Myers Kenney Account Executive Melissa Amaya Office Address 8455 Lenexa Drive CO-EDITORS-IN-CHIEF Overland Park, KS 66214 For Additional Information [email protected] Charles M. Balch, MD, FACS Advisory Board Visit our website at Professor of Surgery, The University of Texas PatientResource.com to read bios of MD Anderson Cancer Center our Medical and Patient Advisory Board. Editor-in-Chief, Patient Resource LLC Editor-in-Chief, Annals of Surgical Oncology Past President, Society of Surgical Oncology For Additional Copies: To order additional copies of Patient Resource Cancer Guide: Understanding Cancer Immunotherapy, Howard L. -
An Effective Strategy of Human Tumor Vaccine Modification by Coupling
An effective strategy of human tumor vaccine modification by coupling bispecific costimulatory molecules Claudia Haas,1 Christel Herold-Mende,2 Roswitha Gerhards,3 and Volker Schirrmacher1 1German Cancer Research Center, Tumor Immunology Program, Heidelberg, Germany; 2Department of Neurosurgery, University-Clinic, Heidelberg, Germany; and 3Marien-Hospital, Herne, Germany. A new, generally applicable procedure is described for the introduction of defined costimulatory molecules into human cancer cells to increase their T-cell stimulatory capacity. The procedure involves infection with Newcastle disease virus to mediate the cell surface binding of costimulatory molecules (e.g., specially designed bispecific antibodies (bsAb)). The modification is independent of tumor cell proliferation and laborious recombinant gene technology and can be applied directly to freshly isolated and g-irradiated patient-derived tumor cells as an autologous cancer vaccine. Following the infection of tumor cells with a nonvirulent strain of Newcastle disease virus, the cells are washed and then further modified by coincubation with bsAbs, which attach with one arm to the viral hemagglutinin-neuraminidase (HN) molecule on the infected tumor cells. The second specificity of one bsAb (bs HN 3 CD28) is directed against CD28 to augment antitumor T-cell responses by selectively channeling positive costimulatory signals via the CD28 pathway. A second bsAb (bs HN 3 CD3) was produced to deliver T-cell receptor-mediated signals either alone (bsCD3 vaccine) or in combination with anti-CD28 (bsCD3 vaccine plus bsCD28 vaccine). In human T-cell stimulation studies in vitro, the bsCD28 vaccine caused an up-regulation of early (CD69) and late (CD25) T-cell activation markers on CD4 and CD8 T lymphocytes from either normal healthy donors or cancer patients (autologous system) and induced tumor cytostasis in nonmodified bystander tumor cells. -
Chemotherapy and Immunotherapy Combination in Advanced Prostate Cancer Susan Slovin, MD, Phd
Chemotherapy and Immunotherapy Combination in Advanced Prostate Cancer Susan Slovin, MD, PhD Dr. Slovin is a medical oncologist at the Abstract: In prostate cancer, there is considerable evidence Sidney Kimmel Center for Prostate and that tumors promote immune tolerance starting early in the Urologic Cancers of Memorial Sloan- disease. By suppressing tumors and activating immune system Kettering Cancer Center in New York, homeostatic mechanisms, chemotherapy may help overcome this New York. tumor-induced immune tolerance. As such, chemotherapy may therefore support improved results from novel immune-modu- lating therapies. Prostate cancer is particularly suited for active Address correspondence to: immunotherapy because prostate tumor cells express a number of Susan Slovin, MD, PhD distinctive surface antigens. Sipuleucel-T, which has recently been Genitourinary Oncology Service approved in the United States, is an active immunotherapy that Sidney Kimmel Center for Prostate and Urologic Cancers triggers T-cell responses against prostate cancer. An exploratory Memorial Sloan-Kettering Cancer Center analysis of phase III trial participants found a substantial survival 1275 York Avenue benefit to receiving docetaxel some months after sipuleucel-T. New York, NY 10065 However, VITAL-2, a phase III trial investigating a prostate cancer Phone: 646-422-4470 therapeutic vaccine plus concurrent docetaxel versus standard Fax: 212-988-0701 docetaxel therapy in advanced prostate cancer, observed lower E-mail: [email protected] overall survival with the vaccine regimen. This trial highlights major unresolved questions concerning the optimum choice, dosing, and timing of chemotherapy relative to active immuno- therapy. Patient characteristics, prostate cancer disease stage, and treatment history also may influence the response to combined therapy. -
Feeling the Force: Role of Amotl2 in Normal Development and Cancer
Department of Oncology and Pathology Karolinska Institute, Stockholm, Sweden FEELING THE FORCE: ROLE OF AMOTL2 IN NORMAL DEVELOPMENT AND CANCER Aravindh Subramani Stockholm 2019 All previously published papers were reproduced with permission from the publisher. Front cover was modified from ©Renaud Chabrier and illustrated by Yu-Hsuan Hsu Published by Karolinska Institute. Printed by: US-AB Stockholm © Aravindh Subramani, 2019 ISBN 978-91-7831-426-3 Feeling the force: Role of AmotL2 in normal development and cancer. THESIS FOR DOCTORAL DEGREE (Ph.D.) J3:04, Torsten N Wiesel, U410033310, Bioclinicum, Karolinska University Hospital, Solna, Stockholm Friday, April 12th, 2019 at 13:00 By Aravindh Subramani Principal Supervisor: Opponent: Professor. Lars Holmgren Professor. Marius Sudol Karolinska Institute National University of Singapore Department of Oncology-Pathology Mechanobiology Institute (MBI) Co-supervisor(s): Examination Board: Docent. Jonas Fuxe Docent. Kaisa Lehti Karolinska Institute Karolinska institute Department of Microbiology, Tumor and Cell Department of Microbiology and Tumor Biology Biology (MTC) center (MTC) Associate Professor. Johan Hartman Docent. Ingvar Ferby Karolinska Institute Uppsala University Department of Oncology-Pathology Department of Medical Biochemistry and Microbiology Docent. Mimmi Shoshan Karolinska Institute Department of Oncology-Pathology To my mom and dad “Real knowledge is to know the extent of one's ignorance.” (Confucius) ABSTRACT Cells that fabricate the body, dwell in a very heterogeneous environment. Self-organization of individual cells into complex tissues and organs at the time of growth and revival is brought about by the combinatory action of biomechanical and biochemical signaling processes. Tissue generation and functional organogenesis, requires distinct cell types to unite together and associate with their corresponding microenvironment in a spatio-temporal manner. -
The Role of the C-Terminus Merlin in Its Tumor Suppressor Function Vinay Mandati
The role of the C-terminus Merlin in its tumor suppressor function Vinay Mandati To cite this version: Vinay Mandati. The role of the C-terminus Merlin in its tumor suppressor function. Agricultural sciences. Université Paris Sud - Paris XI, 2013. English. NNT : 2013PA112140. tel-01124131 HAL Id: tel-01124131 https://tel.archives-ouvertes.fr/tel-01124131 Submitted on 19 Mar 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 TABLE OF CONTENTS Abbreviations ……………………………………………………………………………...... 8 Resume …………………………………………………………………………………… 10 Abstract …………………………………………………………………………………….. 11 1. Introduction ………………………………………………………………………………12 1.1 Neurofibromatoses ……………………………………………………………………….14 1.2 NF2 disease ………………………………………………………………………………15 1.3 The NF2 gene …………………………………………………………………………….17 1.4 Mutational spectrum of NF2 gene ………………………………………………………..18 1.5 NF2 in other cancers ……………………………………………………………………...20 2. ERM proteins and Merlin ……………………………………………………………….21 2.1 ERMs ……………………………………………………………………………………..21 2.1.1 Band 4.1 Proteins and ERMs …………………………………………………………...21 2.1.2 ERMs structure ………………………………………………………………………....23 2.1.3 Sub-cellular localization and tissue distribution of ERMs ……………………………..25 2.1.4 ERM proteins and their binding partners ……………………………………………….25 2.1.5 Assimilation of ERMs into signaling pathways ………………………………………...26 2.1.5. A. ERMs and Ras signaling …………………………………………………...26 2.1.5. B. ERMs in membrane transport ………………………………………………29 2.1.6 ERM functions in metastasis …………………………………………………………...30 2.1.7 Regulation of ERM proteins activity …………………………………………………...31 2.1.7. -
A Review on Cancer Immunotherapy and Applications of Nanotechnology to Chemoimmunotherapy of Different Cancers
molecules Review A Review on Cancer Immunotherapy and Applications of Nanotechnology to Chemoimmunotherapy of Different Cancers Safiye Akkın 1 , Gamze Varan 2 and Erem Bilensoy 1,* 1 Department of Pharmaceutical Technology, Faculty of Pharmacy, Hacettepe University, 06100 Ankara, Turkey; akkinsafi[email protected] 2 Department of Vaccine Technology, Hacettepe University Vaccine Institute, 06100 Ankara, Turkey; [email protected] * Correspondence: [email protected] Abstract: Clinically, different approaches are adopted worldwide for the treatment of cancer, which still ranks second among all causes of death. Immunotherapy for cancer treatment has been the focus of attention in recent years, aiming for an eventual antitumoral effect through the immune system response to cancer cells both prophylactically and therapeutically. The application of nanoparticulate delivery systems for cancer immunotherapy, which is defined as the use of immune system features in cancer treatment, is currently the focus of research. Nanomedicines and nanoparticulate macro- molecule delivery for cancer therapy is believed to facilitate selective cytotoxicity based on passive or active targeting to tumors resulting in improved therapeutic efficacy and reduced side effects. Today, with more than 55 different nanomedicines in the market, it is possible to provide more effective cancer diagnosis and treatment by using nanotechnology. Cancer immunotherapy uses the body’s immune system to respond to cancer cells; however, this may lead to increased immune response Citation: Akkın, S.; Varan, G.; and immunogenicity. Selectivity and targeting to cancer cells and tumors may lead the way to safer Bilensoy, E. A Review on Cancer immunotherapy and nanotechnology-based delivery approaches that can help achieve the desired Immunotherapy and Applications of success in cancer treatment. -
Gene, Vaccine and Immuno- Therapies Against Cancer: New Approaches to an Old Problem
EUROPEAN PARLIAMENT Scientific Technology Options Assessment S T O A Gene, Vaccine and Immuno- therapies against Cancer: New Approaches to an Old Problem Results of the project “Future Development of Cancer Therapy” Study (IP/A/STOA/FWC/2005-28/SC17) IPOL/A/STOA/ST/2006-21 PE 383.215 P This publication is the result of a project commissioned by STOA under Framework Contract IP/A/STOA/FWC/2005-28 on "Future Development of Cancer Therapy". It contains contributions and discussions arising from a workshop that took place at the European Parliament in Brussels in February 2007 under the title "Gene, Vaccine and Immuno- therapies against Cancer: New Approaches to an Old Problem". Only published in English. Authors: ETAG European Technology Assessment Group Institute for Technology Assessment and Systems Analysis (ITAS), Karlsruhe Danish Board of Technology (DBT), Copenhagen Flemish Institute for Science and Technology Assessment (viWTA), Brussels Parliamentary Office of Science and Technology (POST), London Rathenau Institute, The Hague Volker Reuck, ITAS E-mail: [email protected] Arnold Sauter, ITAS E-mail: [email protected] Administrator: Mr Marcelo Sosa-Iudicissa Policy Department A: Economic and Scientific Policy DG Internal Policies European Parliament Rue Wiertz 60 - ATR 00K066 B-1047 Brussels Tel: +32 (0)2 284 17 76 Fax: +32(0)2 284 69 29 E-mail: [email protected] Manuscript completed in February 2007. The opinions expressed in this document do not necessarily represent the official position of the European Parliament. Reproduction and translation for non-commercial purposes are authorised provided the source is acknowledged and the publisher is given prior notice and receives a copy. -
Immunology 101
Immunology 101 Justin Kline, M.D. Assistant Professor of Medicine Section of Hematology/Oncology Committee on Immunology University of Chicago Medicine Disclosures • I served as a consultant on Advisory Boards for Merck and Seattle Genetics. • I will discuss non-FDA-approved therapies for cancer 2 Outline • Innate and adaptive immune systems – brief intro • How immune responses against cancer are generated • Cancer antigens in the era of cancer exome sequencing • Dendritic cells • T cells • Cancer immune evasion • Cancer immunotherapies – brief intro 3 The immune system • Evolved to provide protection against invasive pathogens • Consists of a variety of cells and proteins whose purpose is to generate immune responses against micro-organisms • The immune system is “educated” to attack foreign invaders, but at the same time, leave healthy, self-tissues unharmed • The immune system can sometimes recognize and kill cancer cells • 2 main branches • Innate immune system – Initial responders • Adaptive immune system – Tailored attack 4 The immune system – a division of labor Innate immune system • Initial recognition of non-self (i.e. infection, cancer) • Comprised of cells (granulocytes, monocytes, dendritic cells and NK cells) and proteins (complement) • Recognizes non-self via receptors that “see” microbial structures (cell wall components, DNA, RNA) • Pattern recognition receptors (PRRs) • Necessary for priming adaptive immune responses 5 The immune system – a division of labor Adaptive immune system • Provides nearly unlimited diversity of receptors to protect the host from infection • B cells and T cells • Have unique receptors generated during development • B cells produce antibodies which help fight infection • T cells patrol for infected or cancerous cells • Recognize “foreign” or abnormal proteins on the cell surface • 100,000,000 unique T cells are present in all of us • Retains “memory” against infections and in some cases, cancer. -
Immunotherapy
!!" !# Hormonal control of androgen pathways and sites of action of PCa therapies Testis Negative feedback control Testosterone (95%) LHRH receptor agonists/ LH GnRH antagonists Orchiectomy Androgen Hypothalamus estrogens receptor Pulsatile GnRH Pituitary AAs ACTH release Prostate Adrenal glands Negative feedback control Adrenal androgens (5%) ACTH, adrenocorticotrophic hormone; FSH, follicle-stimulating hormone; LH, luteinising hormone 4 Drudge-Coates. Int J Urol Nurs 2009;3:85-92 Chronology of FDA Approvals, CRPC Docetaxel Abiraterone + + Prednisone Prednisone Post-Docetaxel Abiraterone % + Prednisone Pre-Docetaxel #$ "! ! 1981 1993 1996 1997 2002 2004 2010 2011 2012 2013 Estramustine Cabazitaxel Enzalutamide + Post- Prednisone Docetaxel Adapted from Gomella Biologic Mechanisms Driving CRPC Antonarakis and Armstrong, Clin Oncol News 2011 Galeterone: Selective, Multi-targeted, Small Molecule for Treatment of CRPC CYP17 Lyase Inhibitor AR Antagonist AR Degrader Inhibits androgen synthesis Blocks androgen binding Decreases AR levels Abiraterone Enzalutamide • No mandatory steroids • Not a GABAA antagonist • Active in C-terminal loss Galeterone • Fasting not required • No seizures AR splice variants • Preclinical activity in • Preclinical activity in mutation T878A mutation F876L 11 In-licensed from the University of Maryland, Baltimore. Galeterone in Four Castrate Resistant Prostate Cancer (CRPC) Populations: Results from ARMOR2 M-E Taplin1, KN Chi2, F Chu3, J Cochran4, WJ Edenfield5, -
A Dendritic Cell Cancer Vaccine
MILESTONES MILESTONE 17 to mature. The pulsed dendritic cells are then reinfused into the patient over several cycles. A dendritic cell cancer vaccine Although sipuleucel-T has not been very widely adopted (and is no longer available in the European Union), it was recently announced that the combination of hormonal therapeutics with sipuleucel-T extended the survival of patients with metastatic castration-resistant prostate cancer. Other clinical trials combining sipuleucel-T with radiation, hormo- nal, targeted or other immunothera- pies are ongoing. So far sipuleucel-T remains the only vaccine-based immunotherapy approved for prostate cancer, and is also the only approved cell-based vaccine in the USA. Overall clinical responses to dendritic cell vaccines have been disappointing, but with increasing Credit: Science Photo Library / Alamy Stock Photo Science Photo Library Credit: knowledge, newer and more sophisti- cated strategies are being investigated In 1909 Paul Ehrlich postulated that T cells and induce protective T cell to improve the efficacy of dendritic the immune system may defend responses. If a cancer-specific antigen cell-based vaccines. Improved meth- the host against neoplastic cells and is presented, this can result in an Sipuleucel-T ods to generate more mature and hinder the development of cancers. anti-tumour response. As T cell became in ‘effective’ dendritic cells using ex vivo This concept has been widely recog- responses are indeed crucial for 2010 the first protocols, alternative combinations nized ever since, and eventually led eliciting an immune response against of antigens, optimized loading of to the development of novel cancer cancers, dendritic cells have for a approved dendritic cells and transfection of treatments in more recent years that long time been suggested as potential dendritic cell dendritic cells with RNA or DNA are revolutionized cancer care.