Chapter 8 ANGIOSTATIN Generation, Structure and Function of the Isoforms
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Machine-Learning and Chemicogenomics Approach Defi Nes and Predicts Cross-Talk of Hippo and MAPK Pathways
Published OnlineFirst November 18, 2020; DOI: 10.1158/2159-8290.CD-20-0706 RESEARCH ARTICLE Machine -Learning and Chemicogenomics Approach Defi nes and Predicts Cross-Talk of Hippo and MAPK Pathways Trang H. Pham 1 , Thijs J. Hagenbeek 1 , Ho-June Lee 1 , Jason Li 2 , Christopher M. Rose 3 , Eva Lin 1 , Mamie Yu 1 , Scott E. Martin1 , Robert Piskol 2 , Jennifer A. Lacap 4 , Deepak Sampath 4 , Victoria C. Pham 3 , Zora Modrusan 5 , Jennie R. Lill3 , Christiaan Klijn 2 , Shiva Malek 1 , Matthew T. Chang 2 , and Anwesha Dey 1 ABSTRACT Hippo pathway dysregulation occurs in multiple cancers through genetic and non- genetic alterations, resulting in translocation of YAP to the nucleus and activation of the TEAD family of transcription factors. Unlike other oncogenic pathways such as RAS, defi ning tumors that are Hippo pathway–dependent is far more complex due to the lack of hotspot genetic alterations. Here, we developed a machine-learning framework to identify a robust, cancer type–agnostic gene expression signature to quantitate Hippo pathway activity and cross-talk as well as predict YAP/TEAD dependency across cancers. Further, through chemical genetic interaction screens and multiomics analyses, we discover a direct interaction between MAPK signaling and TEAD stability such that knockdown of YAP combined with MEK inhibition results in robust inhibition of tumor cell growth in Hippo dysregulated tumors. This multifaceted approach underscores how computational models combined with experimental studies can inform precision medicine approaches including predictive diagnostics and combination strategies. SIGNIFICANCE: An integrated chemicogenomics strategy was developed to identify a lineage- independent signature for the Hippo pathway in cancers. -
MINIREVIEW Complex Role of Matrix Metalloproteinases in Angiogen- Esis
Cell Research (1998), 8, 171-177 MINIREVIEW Complex role of matrix metalloproteinases in angiogen- esis SANG QING XIANG AMY* Biochemistry Division, Department of Chemistry, Florida State University, Tallahassee, Florida 32306-4390, USA ABSTRACT Matrix metalloproteinases (MMPs) and tissue in- hibitors of metalloproteinases (TIMPs) play a significant role in regulating angiogenesis, the process of new blood vessel formation. Interstitial collagenase (MMP-1), 72 kDa gelatinase A/type IV collagenase (MMP-2), and 92 kDa gelatinase B/type IV collagenase (MMP-9) dissolve ex- tracellular matrix (ECM) and may initiate and promote angiogenesis. TIMP-1, TIMP-2, TIMP-3, and possibly, TIMP-4 inhibit neovascularization. A new paradigm is emerging that matrilysin (MMP-7), MMP-9, and metal- loelastase (MMP-12) may block angiogenesis by convert- ing plasminogen to angiostatin, which is one of the most potent angiogenesis antagonists. MMPs and TIMPs play a complex role in regulating angiogenesis. An understanding of the biochemical and cellular pathways and mechanisms of angiogenesis will provide important information to al- low the control of angiogenesis, e.g. the stimulation of angiogenesis for coronary collateral circulation formation; while the inhibition for treating arthritis and cancer. Key word s: Collagenases, tissue inhibitors of metallo- proteinases, neovascularization, plasmino- gen angiostatin converting enzymes, ex- tracellular matrix. * Corresponding author: Professor Qing Xiang Amy Sang, Department of Chemistry, 203 Dittmer Laboratory of Chemistry Building, Florida State University, Tallahassee, Florida 32306-4390, USA Phone: (850) 644-8683 Fax: (850) 644-8281 E-mail: [email protected]. 171 MMPs in angiogenesis Significance of matrix metalloproteinases in angiogenesis Matrix metalloproteinases (MMPs) are a family of highly homologous zinc en- dopeptidases that cleave peptide bonds of the extracellular matrix (ECM) proteins, such as collagens, laminins, elastin, and fibronectin[1, 2, 3]. -
Recombinant Human Angiostatin by Twice-Daily Subcutaneous Injection in Advanced Cancer: a Pharmacokinetic and Long-Term Safety Study1
Vol. 9, 4025–4033, September 15, 2003 Clinical Cancer Research 4025 Recombinant Human Angiostatin by Twice-Daily Subcutaneous Injection in Advanced Cancer: A Pharmacokinetic and Long-Term Safety Study1 Laurens V. Beerepoot, Els O. Witteveen, patients went off study after developing hemorrhage in Gerard Groenewegen, William E. Fogler, brain metastases, and 2 patients developed deep venous B. Kim Leel Sim, Carolyn Sidor, thrombosis. No other relevant treatment-related toxicities were seen, even during prolonged treatment. A panel Bernard A. Zonnenberg, Franz Schramel, of coagulation parameters was not influenced by 2 Martijn F. B. G. Gebbink, and Emile E. Voest rhAngiostatin treatment. Long-term (>6 months) stable Department of Medical Oncology, University Medical Center Utrecht disease (<25% growth of measurable uni- or bidimen- 3508 GA, the Netherlands [L. V. B., P. O. W., G. G., B. A. Z., F. S., sional tumor size) was observed in 6 of 24 patients. Five M. F. B. G. G., E. E. V.], and EntreMed Inc., Rockville, Maryland patients received rhAngiostatin treatment for 1 year 20850 [W. E. F., B. K. L. S., C. S.] > (overall median time on treatment 99 days). Conclusions: Long-term twice-daily s.c. treatment ABSTRACT with rhAngiostatin is well tolerated and feasible at the Purpose: A clinical study was performed to evaluate selected doses, and merits additional evaluation. Sys- the pharmacokinetics (PK) and toxicity of three dose temic exposure to rhAngiostatin is within the range of levels of the angiogenesis inhibitor recombinant human drug exposure that has biological activity in preclinical (rh) angiostatin when administered twice daily by s.c. -
The Plasmin–Antiplasmin System: Structural and Functional Aspects
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Bern Open Repository and Information System (BORIS) Cell. Mol. Life Sci. (2011) 68:785–801 DOI 10.1007/s00018-010-0566-5 Cellular and Molecular Life Sciences REVIEW The plasmin–antiplasmin system: structural and functional aspects Johann Schaller • Simon S. Gerber Received: 13 April 2010 / Revised: 3 September 2010 / Accepted: 12 October 2010 / Published online: 7 December 2010 Ó Springer Basel AG 2010 Abstract The plasmin–antiplasmin system plays a key Plasminogen activator inhibitors Á a2-Macroglobulin Á role in blood coagulation and fibrinolysis. Plasmin and Multidomain serine proteases a2-antiplasmin are primarily responsible for a controlled and regulated dissolution of the fibrin polymers into solu- Abbreviations ble fragments. However, besides plasmin(ogen) and A2PI a2-Antiplasmin, a2-Plasmin inhibitor a2-antiplasmin the system contains a series of specific CHO Carbohydrate activators and inhibitors. The main physiological activators EGF-like Epidermal growth factor-like of plasminogen are tissue-type plasminogen activator, FN1 Fibronectin type I which is mainly involved in the dissolution of the fibrin K Kringle polymers by plasmin, and urokinase-type plasminogen LBS Lysine binding site activator, which is primarily responsible for the generation LMW Low molecular weight of plasmin activity in the intercellular space. Both activa- a2M a2-Macroglobulin tors are multidomain serine proteases. Besides the main NTP N-terminal peptide of Pgn physiological inhibitor a2-antiplasmin, the plasmin–anti- PAI-1, -2 Plasminogen activator inhibitor 1, 2 plasmin system is also regulated by the general protease Pgn Plasminogen inhibitor a2-macroglobulin, a member of the protease Plm Plasmin inhibitor I39 family. -
Feeling the Force: Role of Amotl2 in Normal Development and Cancer
Department of Oncology and Pathology Karolinska Institute, Stockholm, Sweden FEELING THE FORCE: ROLE OF AMOTL2 IN NORMAL DEVELOPMENT AND CANCER Aravindh Subramani Stockholm 2019 All previously published papers were reproduced with permission from the publisher. Front cover was modified from ©Renaud Chabrier and illustrated by Yu-Hsuan Hsu Published by Karolinska Institute. Printed by: US-AB Stockholm © Aravindh Subramani, 2019 ISBN 978-91-7831-426-3 Feeling the force: Role of AmotL2 in normal development and cancer. THESIS FOR DOCTORAL DEGREE (Ph.D.) J3:04, Torsten N Wiesel, U410033310, Bioclinicum, Karolinska University Hospital, Solna, Stockholm Friday, April 12th, 2019 at 13:00 By Aravindh Subramani Principal Supervisor: Opponent: Professor. Lars Holmgren Professor. Marius Sudol Karolinska Institute National University of Singapore Department of Oncology-Pathology Mechanobiology Institute (MBI) Co-supervisor(s): Examination Board: Docent. Jonas Fuxe Docent. Kaisa Lehti Karolinska Institute Karolinska institute Department of Microbiology, Tumor and Cell Department of Microbiology and Tumor Biology Biology (MTC) center (MTC) Associate Professor. Johan Hartman Docent. Ingvar Ferby Karolinska Institute Uppsala University Department of Oncology-Pathology Department of Medical Biochemistry and Microbiology Docent. Mimmi Shoshan Karolinska Institute Department of Oncology-Pathology To my mom and dad “Real knowledge is to know the extent of one's ignorance.” (Confucius) ABSTRACT Cells that fabricate the body, dwell in a very heterogeneous environment. Self-organization of individual cells into complex tissues and organs at the time of growth and revival is brought about by the combinatory action of biomechanical and biochemical signaling processes. Tissue generation and functional organogenesis, requires distinct cell types to unite together and associate with their corresponding microenvironment in a spatio-temporal manner. -
The Role of the C-Terminus Merlin in Its Tumor Suppressor Function Vinay Mandati
The role of the C-terminus Merlin in its tumor suppressor function Vinay Mandati To cite this version: Vinay Mandati. The role of the C-terminus Merlin in its tumor suppressor function. Agricultural sciences. Université Paris Sud - Paris XI, 2013. English. NNT : 2013PA112140. tel-01124131 HAL Id: tel-01124131 https://tel.archives-ouvertes.fr/tel-01124131 Submitted on 19 Mar 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 TABLE OF CONTENTS Abbreviations ……………………………………………………………………………...... 8 Resume …………………………………………………………………………………… 10 Abstract …………………………………………………………………………………….. 11 1. Introduction ………………………………………………………………………………12 1.1 Neurofibromatoses ……………………………………………………………………….14 1.2 NF2 disease ………………………………………………………………………………15 1.3 The NF2 gene …………………………………………………………………………….17 1.4 Mutational spectrum of NF2 gene ………………………………………………………..18 1.5 NF2 in other cancers ……………………………………………………………………...20 2. ERM proteins and Merlin ……………………………………………………………….21 2.1 ERMs ……………………………………………………………………………………..21 2.1.1 Band 4.1 Proteins and ERMs …………………………………………………………...21 2.1.2 ERMs structure ………………………………………………………………………....23 2.1.3 Sub-cellular localization and tissue distribution of ERMs ……………………………..25 2.1.4 ERM proteins and their binding partners ……………………………………………….25 2.1.5 Assimilation of ERMs into signaling pathways ………………………………………...26 2.1.5. A. ERMs and Ras signaling …………………………………………………...26 2.1.5. B. ERMs in membrane transport ………………………………………………29 2.1.6 ERM functions in metastasis …………………………………………………………...30 2.1.7 Regulation of ERM proteins activity …………………………………………………...31 2.1.7. -
Cell Surface-Dependent Generation of Angiostatin4.5
[CANCER RESEARCH 64, 162–168, January 1, 2004] Cell Surface-Dependent Generation of Angiostatin4.5 Hao Wang, Ryan Schultz, Jerome Hong, Deborah L. Cundiff, Keyi Jiang, and Gerald A. Soff Northwestern University Feinberg School of Medicine, Department of Medicine, Division of Hematology/Oncology, Chicago, Illinois ABSTRACT plasminogen activator through the hydrolysis of the Arg561-Val562 peptide bond to yield the two-chain serine proteinase, plasmin, which Angiostatin4.5 (AS4.5) is a naturally occurring human angiostatin iso- is the primary fibrinolytic enzyme. As originally described, angiosta- form, consisting of plasminogen kringles 1–4 plus 85% of kringle 5 (amino tin possesses the first three or four of the five kringle domains of acids Lys78 to Arg529). Prior studies indicate that plasminogen is con- verted to AS4.5 in a two-step reaction. First, plasminogen is activated to plasminogen (16). A variety of proteinases may cleave plasminogen to plasmin. Then plasmin undergoes autoproteolysis within the inner loop of form angiostatin-related proteins, with a range of NH2 and COOH kringle 5, which can be induced by a free sulfhydryl donor or an alkaline termini, and varied degrees of antiangiogenic activity (16, 18–23). We pH. We now demonstrate that plasminogen can be converted to AS4.5 in and others showed previously that in a human system, plasminogen is a cell membrane-dependent reaction. Actin was shown previously to be a converted to angiostatin via plasmin autoproteolysis, which may be surface receptor for plasmin(ogen). We now show that -actin is present mediated by a free sulfhydryl donor (22, 24–26). This reaction results on the extracellular membranes of cancer cells (PC-3, HT1080, and MDA- in an intra-kringle 5 cleavage after amino acids Arg530 or Lys531. -
Heparin/Heparan Sulfate Proteoglycans Glycomic Interactome in Angiogenesis: Biological Implications and Therapeutical Use
Molecules 2015, 20, 6342-6388; doi:10.3390/molecules20046342 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Heparin/Heparan Sulfate Proteoglycans Glycomic Interactome in Angiogenesis: Biological Implications and Therapeutical Use Paola Chiodelli, Antonella Bugatti, Chiara Urbinati and Marco Rusnati * Section of Experimental Oncology and Immunology, Department of Molecular and Translational Medicine, University of Brescia, Brescia 25123, Italy; E-Mails: [email protected] (P.C.); [email protected] (A.B.); [email protected] (C.U.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +39-030-371-7315; Fax: +39-030-371-7747. Academic Editor: Els Van Damme Received: 26 February 2015 / Accepted: 1 April 2015 / Published: 10 April 2015 Abstract: Angiogenesis, the process of formation of new blood vessel from pre-existing ones, is involved in various intertwined pathological processes including virus infection, inflammation and oncogenesis, making it a promising target for the development of novel strategies for various interventions. To induce angiogenesis, angiogenic growth factors (AGFs) must interact with pro-angiogenic receptors to induce proliferation, protease production and migration of endothelial cells (ECs). The action of AGFs is counteracted by antiangiogenic modulators whose main mechanism of action is to bind (thus sequestering or masking) AGFs or their receptors. Many sugars, either free or associated to proteins, are involved in these interactions, thus exerting a tight regulation of the neovascularization process. Heparin and heparan sulfate proteoglycans undoubtedly play a pivotal role in this context since they bind to almost all the known AGFs, to several pro-angiogenic receptors and even to angiogenic inhibitors, originating an intricate network of interaction, the so called “angiogenesis glycomic interactome”. -
Isolation and Characterization of the Circulating Form of Human Endostatin
View metadata,FEBS 19651 citation and similar papers at core.ac.uk FEBS Letters 420 (1997)brought to 129^133 you by CORE provided by Elsevier - Publisher Connector Isolation and characterization of the circulating form of human endostatin Ludger Staëndker1;a, Michael Schradera, Sandip M. Kanseb, Michael Juërgensa, Wolf-Georg Forssmanna, Klaus T. Preissnerb;* aLower Saxony Institute for Peptide Research (IPF), D-30625 Hannover, Germany bHaemostasis Research Unit, Kerckho¡-Klinik, MPI, Sprudelhof 11, D-61231 Bad Nauheim, Germany Received 21 September 1997; revised version received 19 November 1997 fragment of plasminogen [10], exhibited potent tumor inhib- Abstract Recently, fragments of extracellular proteins, includ- ing endostatin, were defined as a novel group of angiogenesis itory activity. inhibitors. In this study, human plasma equivalent hemofiltrate Using a human peptide bank including at least 300 000 was used as a source for the purification of high molecular weight peptide components generated from hemo¢ltrate of patients peptides (10^20 kDa), and the isolation and identification of with chronic renal diseases [12] we were able to isolate and circulating human endostatin are described. The purification of characterize di¡erent bioactive peptides. Most of these pep- this C-terminal fragment of collagen K1(XVIII) was guided by tides identi¢ed so far are proteolytic products of plasma com- MALDI-MS and the exact molecular mass determined by ESI- ponents [13]. For example, bioactive RGD peptides from vi- MS was found to be 18 494 Da. N-terminal sequencing revealed tronectin and ¢brinogen [14,15], proteolytic fragments of the identity of this putative angiogenesis inhibitor and its close plasma albumin, haptoglobin or L -microglobulin were puri- relation to mouse endostatin. -
Effects on Neovascularization Matrix Metalloproteinases Generate
Matrix Metalloproteinases Generate Angiostatin: Effects on Neovascularization Lynn A. Cornelius, Leslie C. Nehring, Elizabeth Harding, Mark Bolanowski, Howard G. Welgus, Dale K. Kobayashi, This information is current as Richard A. Pierce and Steven D. Shapiro of September 29, 2021. J Immunol 1998; 161:6845-6852; ; http://www.jimmunol.org/content/161/12/6845 Downloaded from References This article cites 38 articles, 19 of which you can access for free at: http://www.jimmunol.org/content/161/12/6845.full#ref-list-1 Why The JI? Submit online. http://www.jimmunol.org/ • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average by guest on September 29, 2021 Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 1998 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Matrix Metalloproteinases Generate Angiostatin: Effects on Neovascularization1 Lynn A. Cornelius,2* Leslie C. Nehring,* Elizabeth Harding,| Mark Bolanowski,| Howard G. Welgus,* Dale K. Kobayashi,¶ Richard A. Pierce,* and Steven D. Shapiro†‡§¶ Angiostatin, a cleavage product of plasminogen, has been shown to inhibit endothelial cell proliferation and metastatic tumor cell growth. -
Mechanisms of Angiostatin Formation by Tumour Cells
Mechanisms of Angiostatin Formation by Tumour Cells ANGELINA JAP LAY A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of New South Wales Australia, 2001 TABLE OF CONTENTS TABLE OF CONTENTS LIST OF FIGURES viii LIST OF TABLES xi LIST OF ABBREVIATIONS xii LIST OF PUBLICATIONS xiv STATEMENT xv ACKNOWLEDGMENTS xvi DEDICATION xvii SUMMARY xviii CHAPTER 1 LITERATURE REVIEW 1.1 ANGIOGENESIS 1.1.1 Introduction. 1 1 . .21 Role of endothelial cells in normal physiology . 4 1.1.3 Angiogenesis a cascade of events . 5 1.1.3.1 The extracellular matrix remodelling. 6 1.1.3.1.1 Metalloproteinases in angiogenesis.................. 6 1.1.3.1.2 Plasminogen activator (PA)-system in angiogenesis... 7 1.1.3.2 Initiation of angiogenic cascade. 9 1.1.3.3 Endothelial cell proliferation and migration . .10 1.1.3.4 Maturation and stabilisation of the neovasculature......... 11 1. 1.4 Control of angiogenesis the balance hypothesis . .12 1.1.4.1 Angiogenic stimulators.................................. 14 1.1.4.1.1 Direct angiogenic inducers.......................... 14 1.1.4.1.2 Indirect angiogenic inducers . .15 . 1.1.4.2 Angiogenic inhibitors. .16 . 1.1.5 Triggers of angiogenic response . .17 . 1.1.5.1 Hypoxia................................................ 18 1.1.5.2 Mechanical injury. 19. 1.1.5.3 Inflammation . .19 . 1.1.5.4 Genetic factors . .19 . 1.1.6 Tumour angiogenesis . 20. 1.1.7 Antiangiogenic therapy...................................... 22 1.2 PLASMINOGEN/PLASMIN SYSTEM 1.2.1 Introduction................................................. 24 1.2.2 Structure . .24 . 1.2.3 Kring le domains of plasminogen . -
7486.Full-Text.Pdf
[CANCER RESEARCH 64, 7486–7490, October 15, 2004] Adeno-Associated Viral Vector-Mediated Expression of Endostatin Inhibits Tumor Growth and Metastasis in an Orthotropic Pancreatic Cancer Model in Hamsters Takuji Noro,1,3 Koichi Miyake,1 Noriko Suzuki-Miyake,1 Tsutomu Igarashi,1 Eiji Uchida,2 Takeyuki Misawa,3 Yoji Yamazaki,3 and Takashi Shimada1 Departments of 1Biochemistry and Molecular Biology and 2Surgery for Organ Function and Biological Regulation, Nippon Medical School, Tokyo, Japan; and 3Department of Surgery, Jikei University School of Medicine, Tokyo, Japan ABSTRACT The present study examines the feasibility of antiangiogenic gene therapy for treatment of pancreatic cancer using an orthotopic model. We examined the feasibility of using adeno-associated virus (AAV)- When PGHAM-1 derived from chemically induced hamster pancre- mediated systemic delivery of endostatin in gene therapy to treat metas- atic cancer cells (11) is injected into the pancreas of hamsters, the cells tasis of pancreatic cancer. We established an animal model of orthotopic metastatic pancreatic cancer in which the pancreatic cancer cell line develop ductal adenocarcinoma that closely resembles human pancre- PGHAM-1 was inoculated into the pancreas of Syrian golden hamsters. atic carcinoma and, like its human counterpart, frequently metasta- Transplanted cells proliferated rapidly and metastasized to the liver. An sizes to the liver. Thus, hamsters inoculated with PGHAM-1 cells .(AAV vector expressing endostatin (5 ؋ 1010 particles) was injected intra- represent an orthotopic pancreatic cancer model (12 muscularly into the left quadriceps or intravenously into the portal vein. We used a classical adeno-associated virus (AAV) serotype 2 vector These routes of vector administration were evaluated by comparing var- expressing endostatin to achieve a systemic state of antiangiogenesis in ious parameters of tumor development.