Phylogeny of ‘araphid’ diatoms inferred from SSU and LSU rDNA, RBCL and PSBA sequences Linda K. Medlin, Yves Desdevises To cite this version: Linda K. Medlin, Yves Desdevises. Phylogeny of ‘araphid’ diatoms inferred from SSU and LSU rDNA, RBCL and PSBA sequences. Vie et Milieu / Life & Environment, Observatoire Océanologique - Laboratoire Arago, 2016. hal-02144540 HAL Id: hal-02144540 https://hal.archives-ouvertes.fr/hal-02144540 Submitted on 26 Jul 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. VIE ET MILIEU - LIFE AND ENVIRONMENT, 2016, 66 (2): 129-154 PHYLOGENY OF ‘arapHID’ DIatoms INFErrED From SSU and LSU RDNA, RBCL AND PSBA SEQUENCES L. K. MEDLIN 1*, Y. DESDEVISES 2 1 Marine Biological Association of the UK, the Citadel, Plymouth, PL1 2PB UK Royal Botanic Gardens, Edinburgh, Scotland, UK 2 Sorbonne Universités, UPMC Univ Paris 06, CNRS, Biologie Intégrative des Organismes Marins (BIOM), Observatoire Océanologique, F-66650, Banyuls/Mer, France * Corresponding author:
[email protected] ARAPHID ABSTRACT. – Phylogenies of the diatoms have largely been inferred from SSU rDNA sequenc- DIATOMS DIVERGENCE TIME ESTIMATION es. Because previously published SSU rDNA topologies of araphid pennate diatoms have var- LSU ied, a supertree was constructed in order to summarize those trees and used to guide further PINNATE analyses where problems arose.