Proton Transfer Reactions and Kinetics in Water
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Proton Transfer Reaction in Water: Hydronium Ion Formation
Advanced Journal of Chemistry-Section A, 2020, 3(3), 255–258 Available online at : www.ajchem-a.com ISSN Online: 2645-5676 DOI: 10.33945/SAMI/AJCA.2020.3.2 Short Communication Proton Transfer Reaction in Water: Hydronium Ion Formation In Sang Leea, Sitansu Sekhar Nandab,* a Research Division, Divine Lab Limited, Seoul, South Korea b Department of Chemistry, Myongji University, Yongin, South Korea A R T I C L E I N F O A B S T R A C T Received: 28 June 2019 The current ongoing scientific debate deals with accumulation of hydronium Revised: 07 August 2019 ions (H3O+) on water surface. Elevated interfacial concentration measured by Accepted: 31 August 2019 using Raman spectroscopy. A strong surface affinity of H3O+ indicated by Raman Available online: 03 September 2019 spectroscopy under similar conditions. Ion adsorption phenomena, H3O+ formation and its structural activity emphasized in our study. Asymmetric water ion adsorption clearly observed in our research. K E Y W O R D S Raman spectroscopy Hydronium Water Infrared spectroscopy G R A P H I C A L A B S T R A C T * Corresponding author's E-mail address: [email protected] Proton Transfer Reaction in Water: Hydronium… 256 Introduction employed for recording Raman spectra with 2– 10 s acquisition time. A scanning area of 30 μm × In nature, interfacial charge formation is 30 μm was applied to avoid laser damage to known as a ubiquitous phenomenon. water. Fundamental mechanism of interfacial charge formation related with its identification. Results and discussions Researchers have been attracted for charge formation development of appropriate models. -
A Study of Hydrogen Exchange in Benzene And
A STUDY OF HYDROGEN EXCHANGE IN BENZENE AND SEVERAL ALKYLBENZENES By REX LYNN ELMORE B~chelor of Arts Austin College Sherman, Texas 1960 Submitted to the faculty of the Graduate School of the Oklahpma State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY August, 1965 J OKLAHOMA Jjf STATE UNIVERSITY .;.;, i' LIBRARY f DEC 6 1965 j' A STUDY OF HYDROGEN EXCHANGE IN BENZE~ AND ,,:.-· ;" . ·..... : SEVERAL ALKYLBENZENES f ~~~~~~~"'~"''""i;·~l'J!'~~ Thesis Approved: 593417 ii .ACKNOWLEDGMENTS Grateful acknowledgment is made to-Dr. E. M. Hodnett, research adviser, for his patience, guidance, and assistance throughout this work; to Dr. O. C. Dermer, head of the Chemistry Department, for his reading of the manuscript prior to its being typed; to Mr. C.R. Williams, formerly in the Chemistry Department, for his assistance in the early phases of the computer programming; to Mr. Preston Gant, Central Research Division of the Continental Oil Company, for helpful suggestions on the tritium assays; and to Mr. Prem S. Juneja for his helpful suggestions concerning experimental details which arose from time to time. Acknowledgment is made of financial assistance in the form of a graduate teaching assistantship in the Chemis.try Department. Also, a research as.sistantship from the Atomic Energy Commission, Contract No. AT(ll-1)-1049, through the Research Foundation is appreciated. Research done during the term of the latter assistantship provided material for this thesis. iii TABLE OF CONTENTS Chapter Page I. INTRODUCTION. 1 II. HISTORICAL, , 3 III. INTRODUCTION TO THE EXPERIMENTAL WORK 14 Objectives and Plan of the Study. -
Chemistry 20 - Unit 2 - Ph and Poh Notes Name: ______+ - [H3O ] and [OH ]
Chemistry 20 - Unit 2 - pH and pOH Notes Name: _________________________________________ + - [H3O ] and [OH ] + - + - In water both H3O and OH exist H2O + H2O ⇌ H3O + OH + - -14 These concentrations exist in a balanced relationship [H3O ][OH ] = 1.00 x 10 + - This relationship is inversely related ↑ [H3O ] = ↓ [OH ] Example 1: -4 What is the hydroxide ion concentration in a solution with a hydronium ion concentration of 2.59 x 10 M ? + - -14 [H3O ][OH ] = 1.00 x 10 −14 − 1.00×10 [OH ] = + [H3O ] −14 [OH−] = 1.00×10 = 3.86 × 10−11 2.59×10−4 Example 2: If 2.50 g of NaOH was dissolved in water to produce 500mL of solution, what would be the concentration of hydronium and hydroxide ions in solution? + - NaOH ⟶ Na + OH − mol 1 mol 1 [OH ] L = 2.50 g × 40 g × 0.500 L = 0.125 M + - -14 [H3O ][OH ] = 1.00 x 10 −14 −14 [H O+] = 1.00×10 = 1.00×10 = 8.0 × 10−14M 3 [OH−] 1.25 pH Review + pH = − log[H3O ] + −pH [H3O ] = 10 Example 3: What is the pH of a solution of 0.159 M HCl? + - HCl ⟶ H + Cl + pH = − log[H3O ] pH = − log[0.159 M] pH = 0.799 Example 4: What is the hydronium and hydroxide ion concentration of a solution with a pH of 2.42? + −pH −2.42 [H3O ] = 10 = 10 = 0.0038 M + - -14 [H3O ][OH ] = 1.00 x 10 −14 −14 − 1.00×10 1.00×10 −12 [OH ] = + = = 2.63 × 10 M [H3O ] 0.0038 M pOH - Power of OH Since: + - -14 [H3O ][OH ] = 1.00 x 10 Can take the “log” of both sides… pOH = − log[OH−] + - -14 -log([H3O ][OH ]) = -log(1.00 x 10 ) − −pOH [OH ] = 10 + - + - And -log([H3O ][OH ]) = -log[H3O ] + -log[OH ] Therefore… pH + pOH = 14 Example 5: A solution has a pH of 5.750. -
Ionization, Dissociation, and the Investigation of Structure in Small Molecular Models to Develop a Broader Understanding of Gas Phase Ion Chemistry
Ionization, dissociation, and the investigation of structure in small molecular models to develop a broader understanding of gas phase ion chemistry DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Matthew Bernier Graduate Program in Chemistry The Ohio State University 2014 Dissertation Committee: Professor Vicki Wysocki, Advisor Professor Terry Gustafson Professor Abraham Badu-Tawiah Copyright by Matthew Bernier 2014 Abstract This dissertation focuses on molecular systems in the low-mass range to determine how chemical and structural changes can affect subsequent fragmentation chemistry and protonation site. Each system was investigated using MS analysis and gas-phase ion structural techniques selected from tandem MS (MSMS), hydrogen-deuterium exchange (HDX), ion-mobility (IM), and action infra-red multi-photon dissociation (IRMPD). In Chapter 3, the non-standard amino acid gamma-aminobutyric acid (GABA) was placed into a peptide system to test a mechanism which explained the lack of a3 ions in standard peptide fragmentations. GABA extends the peptide backbone by two methylene units and its insertion into the second position of larger peptides increases the intensity of a3 ion. Using MSMS, it was found that this was a result of blocking common favorable fragmentation pathways. The results demonstrated the use of modified peptides for revealing reasons for how peptides fragment. Chapter 4 focused on a unique set of non-canonical amino acids and their ability to affect the trans/cis nature of adjacent amide bonds in peptide sequences. In solution, 4- R-Flouroproline (R-Flp) is found to favor the trans peptide bond and 4-S-fluoroproline (S- flp) favors the cis bond. -
Drugs and Acid Dissociation Constants Ionisation of Drug Molecules Most Drugs Ionise in Aqueous Solution.1 They Are Weak Acids Or Weak Bases
Drugs and acid dissociation constants Ionisation of drug molecules Most drugs ionise in aqueous solution.1 They are weak acids or weak bases. Those that are weak acids ionise in water to give acidic solutions while those that are weak bases ionise to give basic solutions. Drug molecules that are weak acids Drug molecules that are weak bases where, HA = acid (the drug molecule) where, B = base (the drug molecule) H2O = base H2O = acid A− = conjugate base (the drug anion) OH− = conjugate base (the drug anion) + + H3O = conjugate acid BH = conjugate acid Acid dissociation constant, Ka For a drug molecule that is a weak acid The equilibrium constant for this ionisation is given by the equation + − where [H3O ], [A ], [HA] and [H2O] are the concentrations at equilibrium. In a dilute solution the concentration of water is to all intents and purposes constant. So the equation is simplified to: where Ka is the acid dissociation constant for the weak acid + + Also, H3O is often written simply as H and the equation for Ka is usually written as: Values for Ka are extremely small and, therefore, pKa values are given (similar to the reason pH is used rather than [H+]. The relationship between pKa and pH is given by the Henderson–Hasselbalch equation: or This relationship is important when determining pKa values from pH measurements. Base dissociation constant, Kb For a drug molecule that is a weak base: 1 Ionisation of drug molecules. 1 Following the same logic as for deriving Ka, base dissociation constant, Kb, is given by: and Ionisation of water Water ionises very slightly. -
Solvent Effects on the Thermodynamic Functions of Dissociation of Anilines and Phenols
University of Wollongong Research Online University of Wollongong Thesis Collection 1954-2016 University of Wollongong Thesis Collections 1982 Solvent effects on the thermodynamic functions of dissociation of anilines and phenols Barkat A. Khawaja University of Wollongong Follow this and additional works at: https://ro.uow.edu.au/theses University of Wollongong Copyright Warning You may print or download ONE copy of this document for the purpose of your own research or study. The University does not authorise you to copy, communicate or otherwise make available electronically to any other person any copyright material contained on this site. You are reminded of the following: This work is copyright. Apart from any use permitted under the Copyright Act 1968, no part of this work may be reproduced by any process, nor may any other exclusive right be exercised, without the permission of the author. Copyright owners are entitled to take legal action against persons who infringe their copyright. A reproduction of material that is protected by copyright may be a copyright infringement. A court may impose penalties and award damages in relation to offences and infringements relating to copyright material. Higher penalties may apply, and higher damages may be awarded, for offences and infringements involving the conversion of material into digital or electronic form. Unless otherwise indicated, the views expressed in this thesis are those of the author and do not necessarily represent the views of the University of Wollongong. Recommended Citation Khawaja, Barkat A., Solvent effects on the thermodynamic functions of dissociation of anilines and phenols, Master of Science thesis, Department of Chemistry, University of Wollongong, 1982. -
Solvation Structure of Ions in Water
International Journal of Thermophysics, Vol. 28, No. 2, April 2007 (© 2007) DOI: 10.1007/s10765-007-0154-6 Solvation Structure of Ions in Water Raymond D. Mountain1 Molecular dynamics simulations of ions in water are reported for solutions of varying solute concentration at ambient conditions for six cations and four anions in 10 solutes. The solutes were selected to show trends in properties as the size and charge density of the ions change. The emphasis is on how the structure of water is modified by the presence of the ions and how many water molecules are present in the first solvation shell of the ions. KEY WORDS: anion; cation; molecular dynamics; potential functions; solva- tion; water. 1. INTRODUCTION The behavior of aqueous solutions of salts is a topic of continuing interest [1–3]. In this note we examine how the structure of water,as reflected in the oxy- gen–oxygen pair function, is modified as the concentration of ions increases. The method of generating the pair functions is molecular dynamics using the SPC/E model for water [4] and various models for ion–water interactions taken from the literature. The solutes are LiCl, NaCl, KCl, RbCl, NaF, CaCl2, CaSO4,Na2SO4, NaNO3, and guanidinium chloride (GdmCl) [C(NH2)3Cl]. This work is an extension of earlier work [5] to a larger set of ions. The water molecules and ions interact through site–site pair interac- tions consisting of Lennard–Jones potentials and Coulomb interactions so that the interaction between a pair of sites labeled i, j and separated by an interatomic distance r is 12 6 φij (r) = 4ij (σij /r) − (σij /r) + qiqj /r (1) where qi is the charge on site i. -
Affinity of Small-Molecule Solutes to Hydrophobic, Hydrophilic, and Chemically Patterned Interfaces in Aqueous Solution
Affinity of small-molecule solutes to hydrophobic, hydrophilic, and chemically patterned interfaces in aqueous solution Jacob I. Monroea, Sally Jiaoa, R. Justin Davisb, Dennis Robinson Browna, Lynn E. Katzb, and M. Scott Shella,1 aDepartment of Chemical Engineering, University of California, Santa Barbara, CA 93106; and bDepartment of Civil, Architectural and Environmental Engineering, University of Texas at Austin, Austin, TX 78712 Edited by Peter J. Rossky, Rice University, Houston, TX, and approved November 17, 2020 (received for review September 30, 2020) Performance of membranes for water purification is highly influ- However, a molecular understanding that links membrane enced by the interactions of solvated species with membrane surface chemistry to solute affinity and hence membrane func- surfaces, including surface adsorption of solutes upon fouling. tional properties remains incomplete, due in part to the complex Current efforts toward fouling-resistant membranes often pursue interplay among specific interactions (e.g., hydrogen bonds, surface hydrophilization, frequently motivated by macroscopic electrostatics, dispersion) and molecular morphology (e.g., sur- measures of hydrophilicity, because hydrophobicity is thought to face and polymer configurations) that are difficult to disentangle increase solute–surface affinity. While this heuristic has driven di- (11–14). Chemically heterogeneous surfaces are even less un- verse membrane functionalization strategies, here we build on derstood but can affect fouling in complex ways. -
Proton Affinity Changes Driving Unidirectional Proton Transport In
doi:10.1016/S0022-2836(03)00903-3 J. Mol. Biol. (2003) 332, 1183–1193 Proton Affinity Changes Driving Unidirectional Proton Transport in the Bacteriorhodopsin Photocycle Alexey Onufriev1, Alexander Smondyrev2 and Donald Bashford1* 1Department of Molecular Bacteriorhodopsin is the smallest autonomous light-driven proton pump. Biology, The Scripps Research Proposals as to how it achieves the directionality of its trans-membrane Institute, 10550 North Torrey proton transport fall into two categories: accessibility-switch models in Pines Road, La Jolla, CA 92037 which proton transfer pathways in different parts of the molecule are USA opened and closed during the photocycle, and affinity-switch models, which focus on changes in proton affinity of groups along the transport 2Schro¨dinger Inc., 120 West chain during the photocycle. Using newly available structural data, and Forty-Fifth Street, 32nd Floor adapting current methods of protein protonation-state prediction to the Tower 45, New York, NY non-equilibrium case, we have calculated the relative free energies of pro- 10036-4041, USA tonation microstates of groups on the transport chain during key confor- mational states of the photocycle. Proton flow is modeled using accessibility limitations that do not change during the photocycle. The results show that changes in affinity (microstate energy) calculable from the structural models are sufficient to drive unidirectional proton trans- port without invoking an accessibility switch. Modeling studies for the N state relative to late M suggest that small structural re-arrangements in the cytoplasmic side may be enough to produce the crucial affinity change of Asp96 during N that allows it to participate in the reprotonation of the Schiff base from the cytoplasmic side. -
Proton Affinity of SO3
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Proton Affinity of SO3 Cynthia Ann Pommerening, Steven M. Bachrach, and Lee S. Sunderlin Department of Chemistry, Northern Illinois University, DeKalb, Illinois, USA ϩ Collision-induced dissociation (CID) of the radical cation H2SO4 gives the product pairs ϩ ϩ ϩ ϩ H2O SO3 and HO HSO3 with a 1:3 ratio that is essentially independent of collision energy. Statistical analysis of the two channels indicates that the proton affinity of HO is 3 Ϯ ϭ Ϯ 4 kJ/mol lower than that of SO3. This can be used to derive PA(SO3) 591 4 kJ/mol at 0 K and 596 Ϯ 4 kJ/mol at 298 K. Previously, Munson and Smith bracketed the proton affinity as PA(HBr) ϭ 584 kJ/mol Ͻ PA(SO ) Ͻ PA(CO) ϭ 594 kJ/mol. The threshold of 152 Ϯ 16 ϩ 3 kJ/mol for formation of H O ϩ SO indicates that the barrier to CID is small or nonexistent, 2 3 ϩ in contrast to the substantial barriers to decomposition for H3SO4 and H2SO4. (JAmSoc Mass Spectrom 1999, 10, 856–861) © 1999 American Society for Mass Spectrometry he development of extensive scales of proton this work provide an independent measurement of the ⌬ affinity (PA), gas basicity (GB), and acidity ( Ha) PA of SO3. values has provided a framework for the quanti- The gas-phase addition of H2OtoSO3 to form T ϭϪ⌬ tative understanding of ion properties. (PA H for sulfuric acid has a substantial barrier, as indicated by addition of a proton, GB ϭϪ⌬G for addition of a reaction rate measurements [4–6] and computational ⌬ ϭ⌬ proton, and Ha H for deprotonation.) The history results [7, 8]. -
Acid Dissociation Constant - Wikipedia, the Free Encyclopedia Page 1
Acid dissociation constant - Wikipedia, the free encyclopedia Page 1 Help us provide free content to the world by donating today ! Acid dissociation constant From Wikipedia, the free encyclopedia An acid dissociation constant (aka acidity constant, acid-ionization constant) is an equilibrium constant for the dissociation of an acid. It is denoted by Ka. For an equilibrium between a generic acid, HA, and − its conjugate base, A , The weak acid acetic acid donates a proton to water in an equilibrium reaction to give the acetate ion and − + HA A + H the hydronium ion. Key: Hydrogen is white, oxygen is red, carbon is gray. Lines are chemical bonds. K is defined, subject to certain conditions, as a where [HA], [A−] and [H+] are equilibrium concentrations of the reactants. The term acid dissociation constant is also used for pKa, which is equal to −log 10 Ka. The term pKb is used in relation to bases, though pKb has faded from modern use due to the easy relationship available between the strength of an acid and the strength of its conjugate base. Though discussions of this topic typically assume water as the solvent, particularly at introductory levels, the Brønsted–Lowry acid-base theory is versatile enough that acidic behavior can now be characterized even in non-aqueous solutions. The value of pK indicates the strength of an acid: the larger the value the weaker the acid. In aqueous a solution, simple acids are partially dissociated to an appreciable extent in in the pH range pK ± 2. The a actual extent of the dissociation can be calculated if the acid concentration and pH are known. -
The Cloud Point Composition and Flory-Huggins Interaction Parameters of Polyethylene Glycol and Sodium Lignin Sulfonate in Water - Ethanol Mixture
AN ABSTRACT OF THE THESIS OF Luh, Song - Ping for the degree of Master of Science in Chemical Engineering presented on July 22, 1987 Title: The Cloud Point Composition and Flory - Huggins Interaction Parameters of Polyethylene Glycol and Sodium Lignin Sulfonate in Water - Ethanol Mixtures Redacted for Privacy Abstract Approved: Willi J. Frederick/Jr. In designing a solubility based separation process for solvent recovery of an organosolv pulping process, the phase behavior of polymeric lignin molecules in alcohol - water mixed solvent should be known. In this study, sodium lignin sulfonates (NaLS) samples were fractionated into three different molecular weight fractions using a partial dissolution method. The cloud point compositions of each of the three fractions were determined by a cloud point titration method. The experimental data were correlated using the three component Flory - Huggins equation of the Gibbs free energy change of mixing. The binary interaction parameter between water and that between ethanol and NaLSwere found to be a weak function of the NaLS volume fraction, while that between water and ethanol was strongly depend on the solvent composition. The Cloud Point Composition and Flory - Huggins Interaction Parameters of Polyethylene Glycol and Sodium Lignin Sulfonate in Water - Ethanol Mixtures by Luh, Song - Ping A THESIS submitted to Oregon State University in partial fulfillment of the requirements for the degree of Master of Science Completed July 22, 1987 Commencement June 1988 APPROVED: Redacted for Privacy Associate P fessor of Chemi401 Engineering in charge of major Redacted for Privacy Head of Department of dlemical Engineering Redacted for Privacy Dean of Gradu School (I Date thesis is presented July 22, 1987 Typed by Luh, Song - Ping for Luh, Song - Ping TABLE OF CONTENTS Page INTRODUCTION 1 LITERATURE REVIEW 3 1.