Estuary Monitoring Toolkit Turning the Tide 2006
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(Gastropoda: Batillariidae) from Elkhorn Slough, California, USA
Mitochondrial DNA Part B Resources ISSN: (Print) 2380-2359 (Online) Journal homepage: https://www.tandfonline.com/loi/tmdn20 The complete mitogenome of the invasive Japanese mud snail Batillaria attramentaria (Gastropoda: Batillariidae) from Elkhorn Slough, California, USA Hartnell College Genomics Group, Paulina Andrade, Lisbeth Arreola, Melissa Belnas, Estefania Bland, Araceli Castillo, Omar Cisneros, Valentin Contreras, Celeste Diaz, Kevin T. Do, Carlos Donate, Estevan Espinoza, Nathan Frater, Garry G. Gabriel, Eric A. Gomez, Gino F. Gonzalez, Myrka Gonzalez, Paola Guido, Dylan Guidotti, Mishell Guzman Espinoza, Ivan Haro, Javier Hernandez Lopez, Caden E. Hernandez, Karina Hernandez, Jazmin A. Hernandez-Salazar, Jeffery R. Hughey, Héctor Jácome-Sáenz, Luis A. Jimenez, Eli R. Kallison, Mylisa S. King, Luis J. Lazaro, Feifei Zhai Lorenzo, Isaac Madrigal, Savannah Madruga, Adrian J. Maldonado, Alexander M. Medina, Marcela Mendez-Molina, Ali Mendez, David Murillo Martinez, David Orozco, Juan Orozco, Ulises Ortiz, Jennifer M. Pantoja, Alejandra N. Ponce, Angel R. Ramirez, Israel Rangel, Eliza Rojas, Adriana Roque, Beatriz Rosas, Colt Rubbo, Justin A. Saldana, Elian Sanchez, Alicia Steinhardt, Maria O. Taveras Dina, Judith Torres, Silvestre Valdez-Mata, Valeria Vargas, Paola Vazquez, Michelle M. Vazquez, Irene Vidales, Frances L. Wong, Christian S. Zagal, Santiago Zamora & Jesus Zepeda Amador To cite this article: Hartnell College Genomics Group, Paulina Andrade, Lisbeth Arreola, Melissa Belnas, Estefania Bland, Araceli Castillo, Omar Cisneros, Valentin Contreras, Celeste Diaz, Kevin T. Do, Carlos Donate, Estevan Espinoza, Nathan Frater, Garry G. Gabriel, Eric A. Gomez, Gino F. Gonzalez, Myrka Gonzalez, Paola Guido, Dylan Guidotti, Mishell Guzman Espinoza, Ivan Haro, Javier Hernandez Lopez, Caden E. Hernandez, Karina Hernandez, Jazmin A. -
Shell Classification – Using Family Plates
Shell Classification USING FAMILY PLATES YEAR SEVEN STUDENTS Introduction In the following activity you and your class can use the same techniques as Queensland Museum The Queensland Museum Network has about scientists to classify organisms. 2.5 million biological specimens, and these items form the Biodiversity collections. Most specimens are from Activity: Identifying Queensland shells by family. Queensland’s terrestrial and marine provinces, but These 20 plates show common Queensland shells some are from adjacent Indo-Pacific regions. A smaller from 38 different families, and can be used for a range number of exotic species have also been acquired for of activities both in and outside the classroom. comparative purposes. The collection steadily grows Possible uses of this resource include: as our inventory of the region’s natural resources becomes more comprehensive. • students finding shells and identifying what family they belong to This collection helps scientists: • students determining what features shells in each • identify and name species family share • understand biodiversity in Australia and around • students comparing families to see how they differ. the world All shells shown on the following plates are from the • study evolution, connectivity and dispersal Queensland Museum Biodiversity Collection. throughout the Indo-Pacific • keep track of invasive and exotic species. Many of the scientists who work at the Museum specialise in taxonomy, the science of describing and naming species. In fact, Queensland Museum scientists -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Batillaria attramentaria Phylum Mollusca Common Name Japanese false cerith Class Gastropoda Order Neotaenioglossa Family Batillariidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\BATATT.png 153 Final Rank 46.00 Data Deficiency: 12.50 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 12.25 23 7.50 Anthropogenic Influence: 6 10 0 Biological Characteristics: 17 25 5.00 Impacts: 5 30 0 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 40.25 87.50 12.50 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -2 Minimum Salinity (ppt) 7 Maximum Temperature (°C) 40 Maximum Salinity (ppt) 33 Minimum Reproductive Temperature (°C) Minimum Reproductive Salinity (ppt) Maximum Reproductive Temperature (°C) Maximum Reproductive Salinity (ppt) Additional Notes Size of adult shells ranges from 10 to 34 mm. The shell is usually gray-brown, often with a white band below the suture, but can range from light brown to dirty-black. Historically introduced with the Pacific oyster, Crassostrea gigas, but in recent years, it has been found in areas where oysters are not cultivated. Nevertheless, its spread has been attributed to anthropogenic vectors rather than natural dispersal. Report updated on Wednesday, December 06, 2017 Page 1 of 13 1. Distribution and Habitat 1.1 Survival requirements - Water temperature Choice: Considerable overlap – A large area (>75%) of the Bering Sea has temperatures suitable for year-round survival Score: A 3.75 of High uncertainty? 3.75 Ranking Rationale: Background Information: Temperatures required for year-round survival occur over a large Based on its geographic distribution, B. -
Molecular Phylogenetic Relationship of Thiaridean Genus Tarebia Lineate
Journal of Entomology and Zoology Studies 2017; 5(3): 1489-1492 E-ISSN: 2320-7078 P-ISSN: 2349-6800 Molecular phylogenetic relationship of Thiaridean JEZS 2017; 5(3): 1489-1492 © 2017 JEZS genus Tarebia lineate (Gastropoda: Cerithioidea) Received: 23-03-2017 Accepted: 24-04-2017 as determined by partial COI sequences Chittaranjan Jena Department of Biotechnology, Vignan’s University (VFSTRU), Chittaranjan Jena and Krupanidhi Srirama Vadlamudi, Andhra Pradesh, India Abstract An attempt was made to investigate phylogenetic affinities of the genus Tarebia lineata sampled from Krupanidhi Srirama the Indian subcontinent using partial mitochondrial COI gene sequence. The amplified partial mt-COI Department of Biotechnology, gene sequence using universal primers, LCO1490 and HCO2198 resulted into ~700 base pair DNA Vignan’s University (VFSTRU), Vadlamudi, Andhra Pradesh, fragment. The obtained nucleotide sequence of partial COI gene of T. lineata was submitted to BLAST India analysis and 36 close relative sequences of the chosen genera, Cerithioidea were derived. Maximum likelihood (ML) algorithm in-biuilt in RAxML software tool was used to estimate phylogenetic their affinities. The present analysis revealed that a single assemblage of the family Thiaridae supported by a bootstrap value of 96% is earmarked at the base of the derived cladogram as a cluster and emerged as a sister group with another four Cerithioideans. Our dataset brought add-on value to the current taxonomy of Thiaridae of the clade Sorbeconcha by clustering them as sister and non-sister groups indicating the virtual relations. Out of seven genera, Tarebia and Melanoides formed as primary and secondary clusters within the Thiaridae. The monophyly of Thiaridae and its conspecifics were depicted in the cladogram. -
8. the Mollusk Fauna of the Monte Postale
Rendiconti della Società Paleontologica Italiana, 4, 2014, pp. 89-94 Excursion guidebook CBEP 2014-EPPC 2014-EAVP 2014-Taphos 2014 Conferences The Bolca Fossil-Lagerstätten: A window into the Eocene World (editors C.A. Papazzoni, L. Giusberti, G. Carnevale, G. Roghi, D. Bassi & R. Zorzin) 8. The mollusk fauna of the Monte Postale Stefano DOMINICI S. Dominici, Museo di Storia Naturale, Università di Firenze, Via La Pira 4, I-50121 Firenze, Italy; !$`"$ Fossil marine mollusks from Monte Postale, about one mile NE of Bolca (Verona and Vicenza Provinces) and 300 m N of the “Pesciara” (see the map in Papazzoni & Trevisani, 2006), were collected and catalogued at least since the 18th`[ seen, in the second decade of the 19th century, as means to date the rocks, and the already O"~P`[` geologists. In 1823, on the footsteps of Alberto Fortis (1778), Alexandre Brongniart drew stratigraphic sections and collected fossils in the Vicenza province, assigning the Bolca and Roncà invertebrates to one and the same geological interval. In the newly introduced 5~`[` Paris Basin. This meant to Brongniart that they belonged to the older Tertiary, and were distinct from the fossil shells described by Giambattista Brocchi in 1814, typifying the younger Tertiary (Rudwick, 2005). “I can relate the calcareous-trappic terrains of Northern Italy to the lower formation, the most ancient of the upper sediment [i.e., the Tertiary]. I’m struck by the analogy between these two terrains, their utter similarity under almost any aspect. Nothing of the lower terrains of the Parisian limestone is missing in Bolca, Roncà, etc. -
Gastropod Fauna of the Cameroonian Coasts
Helgol Mar Res (1999) 53:129–140 © Springer-Verlag and AWI 1999 ORIGINAL ARTICLE Klaus Bandel · Thorsten Kowalke Gastropod fauna of the Cameroonian coasts Received: 15 January 1999 / Accepted: 26 July 1999 Abstract Eighteen species of gastropods were encoun- flats become exposed. During high tide, most of the tered living near and within the large coastal swamps, mangrove is flooded up to the point where the influence mangrove forests, intertidal flats and the rocky shore of of salty water ends, and the flora is that of a freshwater the Cameroonian coast of the Atlantic Ocean. These re- regime. present members of the subclasses Neritimorpha, With the influence of brackish water, the number of Caenogastropoda, and Heterostropha. Within the Neriti- individuals of gastropod fauna increases as well as the morpha, representatives of the genera Nerita, Neritina, number of species, and changes in composition occur. and Neritilia could be distinguished by their radula Upstream of Douala harbour and on the flats that lead anatomy and ecology. Within the Caenogastropoda, rep- to the mangrove forest next to Douala airport the beach resentatives of the families Potamididae with Tympano- is covered with much driftwood and rubbish that lies on tonos and Planaxidae with Angiola are characterized by the landward side of the mangrove forest. Here, Me- their early ontogeny and ecology. The Pachymelaniidae lampus liberianus and Neritina rubricata are found as are recognized as an independent group and are intro- well as the Pachymelania fusca variety with granulated duced as a new family within the Cerithioidea. Littorini- sculpture that closely resembles Melanoides tubercu- morpha with Littorina, Assiminea and Potamopyrgus lata in shell shape. -
Constructional Morphology of Cerithiform Gastropods
Paleontological Research, vol. 10, no. 3, pp. 233–259, September 30, 2006 6 by the Palaeontological Society of Japan Constructional morphology of cerithiform gastropods JENNY SA¨ LGEBACK1 AND ENRICO SAVAZZI2 1Department of Earth Sciences, Uppsala University, Norbyva¨gen 22, 75236 Uppsala, Sweden 2Department of Palaeozoology, Swedish Museum of Natural History, Box 50007, 10405 Stockholm, Sweden. Present address: The Kyoto University Museum, Yoshida Honmachi, Sakyo-ku, Kyoto 606-8501, Japan (email: [email protected]) Received December 19, 2005; Revised manuscript accepted May 26, 2006 Abstract. Cerithiform gastropods possess high-spired shells with small apertures, anterior canals or si- nuses, and usually one or more spiral rows of tubercles, spines or nodes. This shell morphology occurs mostly within the superfamily Cerithioidea. Several morphologic characters of cerithiform shells are adap- tive within five broad functional areas: (1) defence from shell-peeling predators (external sculpture, pre- adult internal barriers, preadult varices, adult aperture) (2) burrowing and infaunal life (burrowing sculp- tures, bent and elongated inhalant adult siphon, plough-like adult outer lip, flattened dorsal region of last whorl), (3) clamping of the aperture onto a solid substrate (broad tangential adult aperture), (4) stabilisa- tion of the shell when epifaunal (broad adult outer lip and at least three types of swellings located on the left ventrolateral side of the last whorl in the adult stage), and (5) righting after accidental overturning (pro- jecting dorsal tubercles or varix on the last or penultimate whorl, in one instance accompanied by hollow ventral tubercles that are removed by abrasion against the substrate in the adult stage). Most of these char- acters are made feasible by determinate growth and a countdown ontogenetic programme. -
Porirua Harbour Intertidal Fine Scale Monitoring 2009/10
Wriggle coastalmanagement Porirua Harbour Intertidal Fine Scale Monitoring 2009/10 Prepared for Greater Wellington Regional Council July 2010 Harvesting shellfish near the entrance to the Onepoto Arm, Porirua Harbour. Porirua Harbour Intertidal Fine Scale Monitoring 2009/10 Prepared for Greater Wellington Regional Council By Barry Robertson and Leigh Stevens Wriggle Limited, PO Box 1622, Nelson 7040, Ph 0275 417 935, 021 417 936, www.wriggle.co.nz Wriggle coastalmanagement iii Contents Porirua Harbour - Executive Summary . vii 1. Introduction . 1 2. Methods . 3 3. Results and Discussion . 7 4. Conclusions . 19 5. Monitoring . 20 6. Management . 20 7. Acknowledgements ������������������������������������������������������������������������������������������������������������������������������������������������������������������������ 21 8. References ���������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������� 21 Appendix 1. Details on Analytical Methods ��������������������������������������������������������������������������������������������������������������������������������22 Appendix 2. 2010 Detailed Results . 22 Appendix 3. Infauna Characteristics . 32 List of Figures Figure 1. Location of sedimentation and fine scale monitoring sites in Porirua Harbour. 4 Figure 2. Grain size, Porirua Harbour, Jan 2008, 2009 and 2010. 8 Figure 3. Percent mud content at fine scale monitoring sites, Greater Wellington and -
Ahipara, Herekino April 1999, Molluscan Biogeographic
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/256555636 Intertidal biota and washup at Ahipara and Herekino, Northland west coast. Article · January 2004 CITATIONS READS 0 101 7 authors, including: Bruce W Hayward Margaret S. Morley Geomarine Research Auckland Museum 675 PUBLICATIONS 4,416 CITATIONS 58 PUBLICATIONS 355 CITATIONS SEE PROFILE SEE PROFILE Wilma Blom Auckland Museum 18 PUBLICATIONS 311 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: MSc research - Pleistocene extinctions of deep-sea benthic foraminifera: the South Atlantic record View project All content following this page was uploaded by Bruce W Hayward on 06 February 2014. The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document and are linked to publications on ResearchGate, letting you access and read them immediately. INTERTIDAL BIOTA AND WASHUP AT AHIPARA AND HEREKINO, NORTHLAND WEST COAST Bruce W. Hayward1, Margaret S. Morley2, Hugh R. Grenfell1, Rowan Carter3, Glenys C. Hayward4, Wilma M. Blom2, Doug Rogan5 1Geomarine Research, 49 Swainston Rd, St Johns, Auckland, 2Auckland War Memorial Museum, Private Bag 92018, Auckland, 3North Shore City Council, Auckland, 419 Debron Ave, Remuera, Auckland,5Canterbury Museum, Christchurch SUMMARY Three hundred and twenty-nine species are recorded from the Ahipara and Herekino Harbour shores of north-west Northland. These include 178 species of gastropods, 56 species of bivalves, 29 species of seaweeds, 14 species of crabs, 10 species each of chitons and barnacles, 9 species of echinoderms, 6 species each of anemones and polychaete worms. -
Animal-Sediment Relationships Re-Visited: Characterising Species
Journal of Experimental Marine Biology and Ecology 366 (2008) 16–27 Contents lists available at ScienceDirect Journal of Experimental Marine Biology and Ecology journal homepage: www.elsevier.com/locate/jembe Animal-sediment relationships re-visited: Characterising species' distributions along an environmental gradient using canonical analysis and quantile regression splines Marti J. Anderson ⁎ Department of Statistics, University of Auckland, Private Bag 92019, Auckland, New Zealand article info abstract Keywords: Benthic soft-sediment organisms generally show strong relationships with the grain-size characteristics of Canonical analysis of principal coordinates the sediments they inhabit. These relationships, when characterised from field data, tend to be asymmetrical, Predictive models non-linear and heteroscedastic, due to the existence of multiple other potentially important and interacting Quantile regression splines factors, some of which are inevitably unmeasured. For multivariate data, canonical analysis of principal Sediment texture coordinates (CAP) can be used to isolate particular gradients of interest, despite the presence of other Soft-sediment assemblages potentially important factors. For univariate abundance data, models focusing on upper quantiles of species' Species-environment relationships distributions can ameliorate the problem of heterogeneity induced by other variables. Here, a multivariate model of the relationship between benthic inter-tidal estuarine soft-sediment assemblages (sampled over a period of 3 years -
Intertidal Benthic Habitats of Kawhia and Aotea Harbours
Intertidal benthic habitats of Kawhia and Aotea Harbours DOC RESEARCH AND DEVELOPMENT SERIES 327 Kristina A. Hillock and Maheswaran Rohan DOC Research & Development Series is a published record of scientific research carried out, or advice given, by Department of Conservation staff or external contractors funded by DOC. It comprises reports and short communications that are peer-reviewed. This report is available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Science & technical. © Copyright November 2011, New Zealand Department of Conservation ISSN 1177–9306 (web PDF) ISBN 978–0–478–14916–6 (web PDF) This report was prepared for publication by the Publishing Team; editing by Sue Hallas and layout by Lynette Clelland. Publication was approved by the General Manager, Research and Development Group, Department of Conservation, Wellington, New Zealand. Published by Publishing Team, Department of Conservation, PO Box 10420, The Terrace, Wellington 6143, New Zealand. In the interest of forest conservation, we support paperless electronic publishing. CONTENTS Abstract 1 1. Introduction 2 2. Methods 4 2.1 Survey design 4 2.2 Data collection 4 2.3 Analysis of sediment grain size 5 2.4 Geographic Information System (GIS) analysis 5 2.4.1 Mapping 5 2.4.2 Sampling effort analysis 6 2.5 Statistical analysis 6 2.5.1 Presence/absence 6 2.5.2 Density modelling 7 3. Results 7 3.1 Kawhia Harbour 7 3.1.1 Cockles 7 3.1.2 Wedge shells 12 3.1.3 Pipi 16 3.1.4 Other species 16 3.1.5 Invasive species 16 3.1.6 Vegetation 16 3.1.7 Sediment 16 3.1.8 GIS mapping 16 3.2 Aotea Harbour 17 3.2.1 Cockles 24 3.2.2 Wedge shells 27 3.2.3 Pipi 31 3.2.4 Other species 31 3.2.5 Invasive species 31 3.2.6 Vegetation 31 3.2.7 Sediment 31 3.3 Sediment characteristics for Kawhia and Aotea 31 4. -
Havelock Fine Scale Monitoring 2017
Wriggle coastalmanagement Havelock Estuary Fine Scale Monitoring Data 2017 Prepared for Marlborough District Council May 2017 Cover Photo: Havelock Estuary, installing sediment plates in very soft mud habitat at Site F Havelock Estuary sediment plate Site F (NIWA historical coring site HV-2) in the western settling basin. Havelock Estuary Fine Scale Monitoring Data 2017 Prepared for Marlborough District Council by Leigh Stevens Wriggle Limited, PO Box 1622, Nelson 7040, Ph 03 545 6315, 021 417 936, www.wriggle.co.nz Wriggle coastalmanagement iii RECOMMENDED CITATION: Stevens, L.M. 2017. Havelock Estuary: Fine Scale Monitoring Data 2017. Report prepared by Wriggle Coastal Management for Marl- borough District Council. 20p. Contents 1. Introduction . 1 2. Methods . 2 3. Results . 4 4. Monitoring Recommendations . 5 5. Acknowledgements . 5 6. References . 5 Appendix 1. Details on Analytical Methods �����������������������������������������������������������������������������������������������������������������������������������6 Appendix 2. 2017 Detailed Results . 7 Appendix 3. 2001, 2014 and 2015 Detailed Results . 10 List of Tables Table 1. Summary of fine scale physical and chemical results (means), Havelock Estuary, 2017. 4 Table 2. Summary of fine scale plant growth and macrofauna results (means), Havelock Estuary, 2017. 4 List of Figures Figure 1. Havelock Estuary - location of fine scale (A-D) and sediment plate (A-F) monitoring sites. ���������������������� 3 Figure 2. Havelock Estuary - location of monitoring sites in relation to dominant substrate types. 4 Wriggle coastalmanagement v All photos by Wriggle except where noted otherwise. Wriggle coastalmanagement vi 1. INTRODUCTION OVERVIEW Developing an understanding of the condition and risks to coastal and estuarine habitats is critical to the management of biological resources. These objectives, along with understanding changes in condition/trends, are key objectives of Marlborough District Council’s State of the Environment Estuary monitoring programme.