CHARACTERISATION of CYTOCHROME P450s in ANOPHELES GAMBIAE
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Allelic Variation and Multigenic Metabolic Activity of Cytochrome
Allelic Variation and Multigenic Metabolic Activity of Cytochrome P450s Confer Insecticide Resistance in Field Populations of Anopheles funestus s.s., a Major Malaria Vector in Africa Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor in Philosophy by Sulaiman Sadi Ibrahim January 2015 I DECLARATION This work has not previously been accepted in substance for any degree and is not being currently submitted in candidature for any degree. Signed ........................................................................................(Candidate) Date ........................................................................................... Statement 1 This thesis is the result of my own investigation, except where otherwise stated. Other sources are acknowledged and bibliography appended. Signed ........................................................................................(Candidate) Date ........................................................................................... Statement 2 I hereby give my consent for this thesis, if accepted, to be available for photocopying and for inter- library loan, and for the title and summary to be made available to outside organisations. Signed ........................................................................................(Candidate) Date ........................................................................................... I DEDICATION This work is for all the individuals (teachers, parents, loved ones and friends) -
Computational Studies to Elucidate the Role of Proteins in the Prevention of Malaria
Computational studies to elucidate the role of proteins in the prevention of malaria A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Engineering and Physical Sciences 2010 Jaclyn Bibby School of Chemical Engineering and Analytical Science Contents Abstract ........................................................................................................................... 25 Declaration ...................................................................................................................... 26 Copyright Statement ....................................................................................................... 27 Publications from this Thesis. ......................................................................................... 28 1. Introduction ................................................................................................................. 29 1.1 Vector borne diseases ................................................................................................ 30 1.1.1 Malaria ................................................................................................................ 30 1.1.2 Dengue ................................................................................................................ 30 1.2 Vectors ...................................................................................................................... 31 1.2.1 Anopheles .......................................................................................................... -
International Journal for Parasitology 45 (2015) 243–251
International Journal for Parasitology 45 (2015) 243–251 Contents lists available at ScienceDirect International Journal for Parasitology journal homepage: www.elsevier.com/locate/ijpara The cytochrome P450 family in the parasitic nematode Haemonchus contortus ⇑ Roz Laing a, , David J. Bartley b, Alison A. Morrison b, Andrew Rezansoff c, Axel Martinelli d, Steven T. Laing a, John S. Gilleard c a University of Glasgow, Glasgow, UK b Moredun Research Institute, Edinburgh, UK c University of Calgary, Calgary, Canada d Welcome Trust Sanger Institute, Cambridge, UK article info abstract Article history: Haemonchus contortus, a highly pathogenic and economically important parasitic nematode of sheep, is Received 26 September 2014 particularly adept at developing resistance to the anthelmintic drugs used in its treatment and control. Received in revised form 3 December 2014 The basis of anthelmintic resistance is poorly understood for many commonly used drugs with most Accepted 4 December 2014 research being focused on mechanisms involving drug targets or drug efflux. Altered or increased drug Available online 31 December 2014 metabolism is a possible mechanism that has yet to receive much attention despite the clear role of xeno- biotic metabolism in pesticide resistance in insects. The cytochrome P450s (CYPs) are a large family of Keywords: drug-metabolising enzymes present in almost all living organisms, but for many years thought to be Parasite absent from parasitic nematodes. In this paper, we describe the CYP sequences encoded in the H. contor- Nematode Metabolism tus genome and compare their expression in different parasite life-stages, sexes and tissues. We devel- Cytochrome P450 oped a novel real-time PCR approach based on partially assembled CYP sequences ‘‘tags’’ and Gene expression confirmed findings in the subsequent draft genome with RNA-seq. -
The Cytochrome P450 Family in the Parasitic Nematode Haemonchus Contortus
Laing, Roz (2010) The cytochrome P450 family in the parasitic nematode Haemonchus contortus. PhD thesis. http://theses.gla.ac.uk/2355/ Copyright and moral rights for this thesis are retained by the author A copy can be downloaded for personal non-commercial research or study, without prior permission or charge This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the Author The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the Author When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given Glasgow Theses Service http://theses.gla.ac.uk/ [email protected] The cytochrome P450 family in the parasitic nematode Haemonchus contortus Roz Laing BSc (Hons) BVMS Institute of Infection and Immunity Faculty of Veterinary Medicine University of Glasgow Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy at the University of Glasgow September 2010 ii Abstract Haemonchus contortus, a parasitic nematode of sheep , is unsurpassed in its ability to develop resistance to the anthelmintic drugs used as the mainstay of its control. A reduction in drug efficacy leads to prophylactic and therapeutic failure, resulting in loss of productivity and poor animal welfare. This situation has reached crisis point in the sheep industry, with farms forced to close their sheep enterprises due to an inability to control resistant nematodes. The mechanisms of anthelmintic resistance are poorly understood for many commonly used drugs. -
Molecular Mechanisms of Cytochrome P450 Monooxygenase
MOLECULAR MECHANISMS OF CYTOCHROME P450 MONOOXYGENASE- MEDIATED PYRETHROID RESISTANCE IN THE HOUSE FLY, MUSCA DOMESTICA (L.) Except where reference is made to the work of others, the work described in this dissertation is my own or was done in collaboration with my advisory committee. This dissertation does not include proprietary or classified information. Fang Zhu Certificate of Approval: Marie W. Wooten Nannan Liu, Chair Professor Associate Professor Biological Sciences Entomology and Plant Pathology Zhanjiang Liu William J. Moar Professor Professor Fisheries and Allied Aquacultures Entomology and Plant Pathology Joe F. Pittman Interim Dean Graduate School MOLECULAR MECHANISMS OF CYTOCHROME P450 MONOOXYGENASE- MEDIATED PYRETHROID RESISTANCE IN THE HOUSE FLY, MUSCA DOMESTICA (L.) Fang Zhu A Dissertation Submitted to the Graduate Faculty of Auburn University in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Auburn, Alabama August 4, 2007 MOLECULAR MECHANISMS OF CYTOCHROME P450 MONOOXYGENASE- MEDIATED PYRETHROID RESISTANCE IN THE HOUSE FLY, MUSCA DOMESTICA (L.) Fang Zhu Permission is granted to Auburn University to make copies of this dissertation at its discretion, upon request of individuals or institutions and at their expense. The author reserves all publication rights. ______________________________ Signature of Author ______________________________ Date of Graduation iii VITA Fang Zhu, daughter of Tao Zhang and Xingzhi Zhu, was born on April 28, 1976, in Anqiu City, Shandong Province, People’s Republic of China. She graduated from Anqiu No. 1 High School in 1995. She attended Shandong Agricultural University in Tai’an, Shandong Province and graduated with a Bachelor of Science degree in Plant Protection in 1999. Then she entered the Graduate School of China Agricultural University in Beijing with major in Entomology. -
Characterization and Expression of the Cytochrome P450 Gene Family In
OPEN Characterization and expression of the SUBJECT AREAS: cytochrome P450 gene family in PHYLOGENETICS GENE EXPRESSION diamondback moth, Plutella xylostella (L.) Liying Yu1,2,3, Weiqi Tang1,2, Weiyi He1,3, Xiaoli Ma1,3, Liette Vasseur1,4, Simon W. Baxter1,5, Received Guang Yang1,3, Shiguo Huang1,3, Fengqin Song1,2,3 & Minsheng You1,3 28 November 2014 Accepted 1Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China, 2Faculty of Life Sciences, Fujian 4 February 2015 Agriculture and Forestry University, Fuzhou 350002, China, 3Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou 350002, China, 4Department of Biological Sciences, Brock University, St. Catharines, Published Ontario, Canada, 5School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, Australia. 10 March 2015 Cytochrome P450 monooxygenases are present in almost all organisms and can play vital roles in hormone Correspondence and regulation, metabolism of xenobiotics and in biosynthesis or inactivation of endogenous compounds. In the present study, a genome-wide approach was used to identify and analyze the P450 gene family of requests for materials diamondback moth, Plutella xylostella, a destructive worldwide pest of cruciferous crops. We identified 85 should be addressed to putative cytochrome P450 genes from the P. xylostella genome, including 84 functional genes and 1 M.Y. ([email protected]. pseudogene. These genes were classified into 26 families and 52 subfamilies. A phylogenetic tree constructed edu.cn) with three additional insect species shows extensive gene expansions of P. xylostella P450 genes from clans 3 and 4. Gene expression of cytochrome P450s was quantified across multiple developmental stages (egg, larva, pupa and adult) and tissues (head and midgut) using P. -
Metabolic Activation and Toxicological Evaluation of Polychlorinated Biphenyls in Drosophila Melanogaster T
www.nature.com/scientificreports OPEN Metabolic activation and toxicological evaluation of polychlorinated biphenyls in Drosophila melanogaster T. Idda1,7, C. Bonas1,7, J. Hofmann1, J. Bertram1, N. Quinete1,2, T. Schettgen1, K. Fietkau3, A. Esser1, M. B. Stope4, M. M. Leijs3, J. M. Baron3, T. Kraus1, A. Voigt5,6 & P. Ziegler1* Degradation of polychlorinated biphenyls (PCBs) is initiated by cytochrome P450 (CYP) enzymes and includes PCB oxidation to OH-metabolites, which often display a higher toxicity than their parental compounds. In search of an animal model refecting PCB metabolism and toxicity, we tested Drosophila melanogaster, a well-known model system for genetics and human disease. Feeding Drosophila with lower chlorinated (LC) PCB congeners 28, 52 or 101 resulted in the detection of a human-like pattern of respective OH-metabolites in fy lysates. Feeding fies high PCB 28 concentrations caused lethality. Thus we silenced selected CYPs via RNA interference and analyzed the efect on PCB 28-derived metabolite formation by assaying 3-OH-2′,4,4′-trichlorobiphenyl (3-OHCB 28) and 3′-OH-4′,4,6′-trichlorobiphenyl (3′-OHCB 28) in fy lysates. We identifed several drosophila CYPs (dCYPs) whose knockdown reduced PCB 28-derived OH-metabolites and suppressed PCB 28 induced lethality including dCYP1A2. Following in vitro analysis using a liver-like CYP-cocktail, containing human orthologues of dCYP1A2, we confrm human CYP1A2 as a PCB 28 metabolizing enzyme. PCB 28-induced mortality in fies was accompanied by locomotor impairment, a common phenotype of neurodegenerative disorders. Along this line, we show PCB 28-initiated caspase activation in diferentiated fy neurons. -
7114-English-Tarjomefa.Pdf
Biotechnology Advances 27 (2009) 474–488 Contents lists available at ScienceDirect Biotechnology Advances journal homepage: www.elsevier.com/locate/biotechadv Research review paper Transgenic plants for enhanced biodegradation and phytoremediation of organic xenobiotics P.C. Abhilash, Sarah Jamil, Nandita Singh ⁎ Eco-Auditing Group, National Botanical Research Institute, Council of Scientific & Industrial Research, Rana Pratap Marg, Lucknow 226 001, Uttar Pradesh, India article info abstract Article history: Phytoremediation — the use of plants to clean up polluted soil and water resources — has received much attention in Received 14 October 2008 the last few years. Although plants have the inherent ability to detoxify xenobiotics, they generally lack the catabolic Received in revised form 26 March 2009 pathway for the complete degradation of these compounds compared to microorganisms. There are also concerns Accepted 3 April 2009 over the potential for the introduction of contaminants into the food chain. The question of how to dispose of plants Available online 14 April 2009 that accumulate xenobiotics is also a serious concern. Hence the feasibility of phytoremediation as an approach to remediate environmental contamination is still somewhat in question. For these reasons, researchers have Keywords: Phytoremediation endeavored to engineer plants with genes that can bestow superior degradation abilities. A direct method for Cytochrome P450s enhancing the efficacy of phytoremediation is to overexpress in plants the genes involved in metabolism, uptake, or Glutathione S-tranferases transport of specific pollutants. Furthermore, the expression of suitable genes in root system enhances the Bacterial enzymes rhizodegradation of highly recalcitrant compounds like PAHs, PCBs etc. Hence, the idea to amplify plant Transgenic plants biodegradation of xenobiotics by genetic manipulation was developed, following a strategy similar to that used to Metabolism develop transgenic crops. -
Conformational Changes in Binding of Substrates with Human Cytochrome P450 Enzymes
Book of oral abstracts 100 Conformational changes in binding of substrates with human cytochrome P450 enzymes F. Peter Guengerich, Clayton J. Wilkey, Michael J. Reddish, Sarah M. Glass, and Thanh T. N. Phan Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA Introduction. Extensive evidence now exists that P450 enzymes can exist in multiple conformations, at least in the substrate-bound forms (e.g., crystallography). This multiplicity can be the result of either an induced fit mechanism or conformational selection (selective substrate binding to one of two or more equilibrating P450 conformations). Aims. Kinetic approaches can be used to distinguish between induced fit and conformational selection models. The same energy is involved in reaching the final state, regardless of the kinetic path. Methods. Stopped-flow absorbance and fluorescence measurements were made with recombinant human P450 enzymes. Analysis utilized kinetic modeling software (KinTek Explorer®). Results. P450 17A1 binding to its steroid ligands (pregnenolone and progesterone and the 17-hydroxy derivatives) is dominated by a conformational selection process, as judged by (a) decreasing rates of substrate binding as a function of substrate concentration, (b) opposite patterns of the dependence of binding rates as a function of varying concentrations of (i) substrate and (ii) enzyme, and (c) modeling of the data in KinTek Explorer. The inhibitory drugs orteronel and abiraterone bind P450 17A1 in multi-step processes, apparently in different ways. The dye Nile Red is also a substrate for P450 17A1 and its sequential binding to the enzyme can be resolved in fluorescence and absorbance changes. P450s 2C8, 2D6, 2E1, and 4A11 have also been analyzed with regard to substrate binding and utilize primarily conformational selection models, as revealed by analysis of binding rates vs. -
Herbicide Genotoxicity Revealed with the Somatic
Rev. Int. Contam. Ambie. 35 (2) 295-305, 2019 DOI: 10.20937/RICA.2019.35.02.03 HERBICIDE GENOTOXICITY REVEALED WITH THE SOMATIC WING SPOT ASSAY OF Drosophila melanogaster (Detección de la genotoxicidad inducida por herbicidas en el ensayo somático de las alas de Drosophila melanogaster) América Nitxin CASTAÑEDA-SORTIBRÁN, Claudia FLORES-LOYOLA, Viridiana MARTÍNEZ-MARTÍNEZ, María Fernanda RAMÍREZ-CORCHADO and Rosario RODRÍGUEZ-ARNAIZ* Laboratorio de Genética y Evolución, Departamento de Biología Celular, Facultad de Ciencias, Universidad Nacional Autónoma de México, Circuito Esterior s/n, Col. Universidad Nacional Autónoma de México, 04510 Ciudad de México, México *Autora para correspondencia: [email protected] (Received April 2017, accepted June 2018) Key words: clomazone, linuron, simazine, somatic mutation and recombination test ABSTRACT The genotoxicity of the herbicides clomazone, linuron and simazine was detected using the somatic wing spot assay of Drosophila melanogaster. For the evaluation of the mutagenic and recombinogenic activities induced by the herbicides two crosses were used: the standard cross (ST) which expresses basal levels of cytochrome P450 enzymes and the high bioactivation cross (HB) with overexpression of P450 genes conferring increased sensitivity to promutagens and procarcinogens. Third-instar lar- vae were exposed by chronic feeding (48 h) to three different concentrations of each herbicide. The frequencies of spots per individual in the treated series were compared to the negative concurrent control series (water or 5 % ethanol solution depending on the herbicide). Clomazone showed positive results for small and total spots in both the ST and the HB crosses. Linuron was positive at all concentrations tested for small and total spots in the ST cross while only positive for small and total spots at the high- est concentration assayed in the HB cross. -
Effect of First, Second and Third Chromosome on the Promoter Activity of Cyp6a8 Gene of Drosophila Melanogaster
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 12-2008 Effect of First, Second and Third Chromosome on the Promoter Activity of Cyp6a8 Gene of Drosophila Melanogaster Anirban Mukherjee University of Tennessee - Knoxville Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Life Sciences Commons Recommended Citation Mukherjee, Anirban, "Effect of First, Second and Third Chromosome on the Promoter Activity of Cyp6a8 Gene of Drosophila Melanogaster. " Master's Thesis, University of Tennessee, 2008. https://trace.tennessee.edu/utk_gradthes/472 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Anirban Mukherjee entitled "Effect of First, Second and Third Chromosome on the Promoter Activity of Cyp6a8 Gene of Drosophila Melanogaster." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Life Sciences. Ranjan Ganguly, Major Professor We have read this thesis and recommend its acceptance: Mariano Labrador, Jae H. Park Accepted for the Council: Carolyn R. Hodges -
Studies on Cytochrome P450 Genes in Drosophila Melanogaster: Relationship Between Over Expression and DDT Resistance, and Xenobiotic Induction
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 12-2006 Studies on Cytochrome P450 genes in Drosophila melanogaster: Relationship between over expression and DDT resistance, and xenobiotic induction Srilalitha Kuruganti University of Tennessee - Knoxville Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Part of the Life Sciences Commons Recommended Citation Kuruganti, Srilalitha, "Studies on Cytochrome P450 genes in Drosophila melanogaster: Relationship between over expression and DDT resistance, and xenobiotic induction. " PhD diss., University of Tennessee, 2006. https://trace.tennessee.edu/utk_graddiss/1976 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Srilalitha Kuruganti entitled "Studies on Cytochrome P450 genes in Drosophila melanogaster: Relationship between over expression and DDT resistance, and xenobiotic induction." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Biochemistry and Cellular and Molecular