Incidental Findings in Research Biobanks
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Protection of Vulnerable Populations: Research Involving Prisoners Albert J
June 2005 Center for Mental Health Services Research Vol 2, Issue 6 University of Massachusetts Medical School Issue Brief Protection of Vulnerable Populations: Research Involving Prisoners Albert J. Grudzinskas, Jr., JD and Jonathan C. Clayfield, MA, LMHC he attitude that, “it is not cruel to inflict The Belmont Report identified three basic on a few criminals, sufferings which ethical principles critical to any research conducted may benefit multitudes of innocent with human subjects and, in particular, prisoners: T respect for persons, beneficence and justice. people through all centuries,” has prevailed in the area of research involving prisoners Respect for persons holds that each individual is through history.1 The very nature of incarceration autonomous and should be treated as free to make – controlled diet and living conditions, subject his or her own choices. The nature of prison, availability, etc. – make prisoners an attractive however, leads to restrictions on autonomy. For example, while paying subjects to participate population to study. There are, however, special in research is considered ethically acceptable, considerations when prisoners participate in prisoners may be unduly influenced or enticed research that must be addressed to ensure their by the monetary gain of participation given that protection as human subjects. This brief will prisoners typically earn far less for other “work” explore some of the issues critical to working activities. Careful consideration should be given with prisoners in research, will discuss the to an individual’s ability to make autonomous standards of informed consent and competency, decisions in light of the possible coercion inherent in a specific environment or setting. -
A Philosophical Investigation of Principlism and the Implications Raised by the Treatment of the Mentally Ill
Aporia vol. 24 no. 1—2014 A Philosophical Investigation of Principlism and the Implications Raised by the Treatment of the Mentally Ill BENJAMIN FOSTER Introduction he objective of this investigation is to identify reasonable and relevant problems and issues posed for Principlism by the mentally T ill. Two concepts of Principlism will be presented: a normative con- ceptualization of the bioethical theory and a descriptive conceptualization. In reference to both, two philosophical questions will be asked: can we know the natures of other minds and, if so, how? These two questions have theoretical and practical implications for the treatment of the mentally ill. And, in so far as the questions have implications for the treatment of the mentally ill, they have implications for the bioethical theory of Principlism. There is a lack of concurrence on the meaning, nature, and function of mental phenomena, producing conceptual difficulties concerning the common morality that provides Principlism its normative authority. Similarly, a contradiction appears to arise when one considers the imaginative leap of predicting another’s desires, feelings, and thoughts, a maneuver that professionals participating in the treatment of the mentally ill must perform. There is also significant ambiguity surrounding the concept of mental illness, which produces pragmatic problems when professionals attempt to diagnose and treat an individual in conjunction Benjamin Foster graduated with a degree in philosophy and a minor in biology from the University of Alaska Fairbanks. While there he served as president of the univer- sity’s philosophy club, The Socratic Society. His primary philosophical interests include ethics and epistemology. He currently plans to attend medical school. -
A DNA Database in the NHS: Your Freedom up for Sale?
A DNA database in the NHS: Your freedom up for sale? May 2013 In April 2013, the Caldicott Committee, including Government Chief Scientist Sir Mark Walport, proposed new rules for data-sharing which would allow the Government to build a DNA database of the whole population of England in the NHS by stealth.1 The plan is to make NHS medical records and people’s genetic information available to commercial companies and to use public-private partnerships to build a system where all private information about every citizen is also accessible to the police, social workers, security services and Government. The Wellcome Trust, which was involved in the Human Genome Project and was led by Walport for ten years, has produced a plan which involves including a variant file, containing the whole genome of every person minus the reference genome, as an attachment to every medical record in the NHS in England.2 This data would be made available to ‘researchers’ (including commercial companies) for data-mining in the cloud and personalised risk assessments would be returned to individuals. The aim is to transform the NHS in line with proposals developed more than a decade ago by former GlaxoSmithKline Chairman Sir Richard Sykes. This is expected to massively expand the market for medicines, medical tests and other products, such as supplements and cholesterol-lowering margarines, by allowing products to be marketed to individuals based on personal risk assessments, created using statistical analysis of genetic data, medical records and other health information. The proposal to build a DNA database in the NHS was endorsed by the Human Genomics Strategy Group in 20123,4 and the Government (led by Prime Minister David Cameron) has quietly adopted this recommendation without telling members of the public. -
Mycode®: Engineering the Perfect Biobank
Linking the Research Community • Spring 2015 A message from MyCode®: Engineering the David H. Ledbetter, PhD Perfect Biobank Geisinger’s biobank and the MyCode® Community Health This issue of Research Initiative began in 2004 with a phone call from Glenn D. Connections is devoted to the Steele Jr., MD, PhD, Geisinger’s former president and CEO, to MyCode® Community Health David H. Ledbetter, PhD, then at Emory University’s School Initiative, a project with the of Medicine. Speaking genetically, not meteorologically, Steele potential to change significantly described Geisinger’s Pennsylvania footprint and resources to health and healthcare. MyCode Ledbetter as being, “as close to Iceland as you’ll ever find in the will uncover new connections United States.”* between genes and disease, inform and improve the health Ledbetter, now Geisinger’s Chief Scientific Officer, found many of Geisinger’s patients and re- similarities between Iceland and Geisinger’s central Pennsylvania envision how we approach our own well-being and that of location. Like Iceland, Geisinger’s regional population was stable, our families. often with three generations in the area. In addition, Geisinger‘s healthcare was centralized with a robust electronic health record This project is possible because of Geisinger’s specific (EHR) in place since 1996. combination of assets: an established biobank; an extensive and robust electronic health record (EHR); and According to Ledbetter, the qualities listed above, along with international expertise in bioethics, medical genetics, Geisinger’s tradition of innovation, creates, “a healthcare genetic counseling and genomics. Our partnership with laboratory and an ideal model to learn when and how genetic Regeneron, an innovative biotechnology company with information can improve health.” Ledbetter described Geisinger’s extensive resources for whole exome sequencing, is key service area as, “the ideal place in the United States to do to positioning this project to make groundbreaking longitudinal, large scale, genomic medicine research.” discoveries. -
Faqs on Applying and Accessing UK Biobank Data
FAQs on applying and accessing UK Biobank data This document contains answers to FAQs from researchers. Please read our UK Biobank Access Policy and Procedures before registering via the UK Biobank Access Management System (AMS). For assistance you can send us a Message via AMS after you have signed up. For queries pre-registration you can email [email protected]. Registration What do I do if I am affiliated with more than one institute? You can add all your current affiliations to a single registration in AMS, listing your personal institute email address for each of them. Who can register for access to the UK Biobank Resource? The Resource is available to all bona fide researchers for all types of health-related research which is in the public interest. What is the cost of Registration? There is no cost to register. I am trying to register but the system will not let me progress. What should I do? If the mandatory fields have been completed please contact the Access Management Team for assistance. Can I register on behalf of someone else? No. The email address used to register must be your personal institute email address. I have submitted my Registration. What happens next? We aim to review all registrations within 10 working days, but this may be longer if additional information is required. My account is locked, what do I do? Follow the process for “What happens if I forget my password?” below. What happens if I forget my password? Click the ‘Forgot your password?’ link on the AMS Log in Page. -
Bioethics and Large-Scale Biobanking: Individualistic Ethics and Collective Projects*
Genomics, Society and Policy 2005, Vol.1, No.2, pp.50–66. Bioethics and large-scale biobanking: individualistic ethics and collective projects* GARRATH WILLIAMS Abstract Like most bioethical discussion, examination of human biobanks has been largely framed in terms of research subjects’ rights, principally informed consent, with some gestures toward public benefits. However, informed consent is for the competent, rights-bearing individual: focussing on the individual, it thus neglects social, economic and even political matters; focussing on the competent rights-bearer, it does not serve situations where consent is plainly inappropriate (eg, the young child) or where coercion can obviously be justified (the criminal). Using the British experience of large-scale biobanking, I argue that the focus on consenting individuals distorts our ways of thinking about biobanks and has serious practical ramifications. This becomes clear if we contrast the case of adult biobanks intended for medical research with two other forms of biobanking. Thus child cohort studies – vital for sound scientific investigation of the interplay of genetics and environment in health – have been very badly funded next to adult studies. On the other hand, forensic databases have attracted massive investment, but little debate – partly owing to a sense that here, at least, is a case where consent is not relevant. Contrasting these central types of biobanking, I will suggest that there are powerful factors at work in limiting ‘ethics’ to individual rights. Projects of this size should direct our attention to more overtly political questions concerning priority setting and organisation of medical research. Introduction In this paper I wish to cast a critical eye at the way in which we – meaning both bioethicists and practitioners – frame ethical and bioethical discussion. -
The ELIXIR Core Data Resources: Fundamental Infrastructure for The
Supplementary Data: The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences The “Supporting Material” referred to within this Supplementary Data can be found in the Supporting.Material.CDR.infrastructure file, DOI: 10.5281/zenodo.2625247 (https://zenodo.org/record/2625247). Figure 1. Scale of the Core Data Resources Table S1. Data from which Figure 1 is derived: Year 2013 2014 2015 2016 2017 Data entries 765881651 997794559 1726529931 1853429002 2715599247 Monthly user/IP addresses 1700660 2109586 2413724 2502617 2867265 FTEs 270 292.65 295.65 289.7 311.2 Figure 1 includes data from the following Core Data Resources: ArrayExpress, BRENDA, CATH, ChEBI, ChEMBL, EGA, ENA, Ensembl, Ensembl Genomes, EuropePMC, HPA, IntAct /MINT , InterPro, PDBe, PRIDE, SILVA, STRING, UniProt ● Note that Ensembl’s compute infrastructure physically relocated in 2016, so “Users/IP address” data are not available for that year. In this case, the 2015 numbers were rolled forward to 2016. ● Note that STRING makes only minor releases in 2014 and 2016, in that the interactions are re-computed, but the number of “Data entries” remains unchanged. The major releases that change the number of “Data entries” happened in 2013 and 2015. So, for “Data entries” , the number for 2013 was rolled forward to 2014, and the number for 2015 was rolled forward to 2016. The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences 1 Figure 2: Usage of Core Data Resources in research The following steps were taken: 1. API calls were run on open access full text articles in Europe PMC to identify articles that mention Core Data Resource by name or include specific data record accession numbers. -
Returning Individual Research Results to Participants: Guidance for a New Research Paradigm
THE NATIONAL ACADEMIES PRESS This PDF is available at http://nap.edu/25094 SHARE Returning Individual Research Results to Participants: Guidance for a New Research Paradigm DETAILS 380 pages | 6 x 9 | PAPERBACK ISBN 978-0-309-47517-4 | DOI 10.17226/25094 CONTRIBUTORS GET THIS BOOK Jeffrey R. Botkin, Michelle Mancher, Emily R. Busta, and Autumn S. Downey, Editors; Committee on the Return of Individual-Specific Research Results Generated in Research Laboratories; Board on Health Sciences Policy; Health and FIND RELATED TITLES Medicine Division; National Academies of Sciences, Engineering, and Medicine Visit the National Academies Press at NAP.edu and login or register to get: – Access to free PDF downloads of thousands of scientific reports – 10% off the price of print titles – Email or social media notifications of new titles related to your interests – Special offers and discounts Distribution, posting, or copying of this PDF is strictly prohibited without written permission of the National Academies Press. (Request Permission) Unless otherwise indicated, all materials in this PDF are copyrighted by the National Academy of Sciences. Copyright © National Academy of Sciences. All rights reserved. Returning Individual Research Results to Participants: Guidance for a New Research Paradigm Returning Individual Research Results to Participants: Guidance for a New Research Paradigm Jeffrey R. Botkin, Michelle Mancher, Emily R. Busta, and Autumn S. Downey, Editors Committee on the Return of Individual-Specific Research Results Generated -
Genetic Data Aren't So Special: Causes and Implications of Re
Genetic Data Aren’t So Special: Causes and Implications of Re-identification T.J. Kasperbauer & Peter H. Schwartz Indiana University Center for Bioethics Indiana University School of Medicine This is the pre-peer-reviewed version of the article published here: https://doi.org/10.1002/hast.1183 Full citation: Kasperbauer, T.J. & Schwartz, P.H. (2020). Genetic data aren’t so special: Causes and implications of re-identification. Hastings Center Report, 50, 30-39. Abstract: Genetic information is widely thought to pose unique risks of re-identifying individuals. Genetic data reveals a great deal about who we are, and, the standard view holds, should consequently be treated differently from other types of data. Contrary to this view, we argue that the dangers of re-identification for genetic and non-genetic data—including health, financial, and consumer information—are more similar than has been recognized. Before we impose different requirements on sharing genetic information, proponents of the standard view must show that they are in fact necessary. We further argue that the similarities between genetic and non-genetic information have important implications for communicating risks during consent for healthcare and research. While patients and research participants need to be more aware of pervasive data sharing practices, consent forms are the wrong place to provide this education. Instead, health systems should engage with patients throughout patient care to educate about data sharing practices. Introduction Genetic data and biological samples containing genetic material are widely thought to differ from other sorts of health data due to the impossibility of truly “de-identifying” genetic information. -
Volume 21 Supplement a December 2015 Next
EMBnet.journal Volume 21 Supplement A December 2015 Next Generation Sequencing: a look into the future Final Conference & MC Meeting of COST Action BM1006 16-17 March 2015 Bratislava, Slovakia http://seqahead.eu/bratislava_2015 ESF provides COST is supported the Cost Office by the EU RTD through an EC Framework contract Programme EDITORIAL/CONTENT EMBnet.journal 21.A Editorial Contents The key task of COST Action BM1006, SeqAhead, Editorial ..............................................................2 Next Generation Sequencing (NGS) Data Analysis COST Action BM1006 (SeqAhead) closing Network, was, as its name suggests, networking; conference ........................................................3 but SeqAhead also emphasised the dissemina- Scientific Programme.........................................5 tion of knowledge. During the four years of the Keynote Lectures ................................................9 Action, SeqAhead surpassed every expectation: Oral Presentations ........................................... 13 with members participating from 29 European Posters.......................................................................25 countries, plus one international partner from South Africa, the Management Committee mem- bership reads like a “who’s-who” of European NGS research. This EMBnet.journal Conference Supplement clearly shows that during the four years of SeqAhead’s existence, the Action members ac- tively shared software and experiences, and col- laborated in numerous projects spanning diverse EMBnet.journal -
From Genes to Genomes: Botanic Gardens Embracing New Tools for Conservation and Research Volume 18 • Number 1
Journal of Botanic Gardens Conservation International Volume 18 • Number 1 • February 2021 From genes to genomes: botanic gardens embracing new tools for conservation and research Volume 18 • Number 1 IN THIS ISSUE... EDITORS Suzanne Sharrock EDITORIAL: Director of Global Programmes FROM GENES TO GENOMES: BOTANIC GARDENS EMBRACING NEW TOOLS FOR CONSERVATION AND RESEARCH .... 03 Morgan Gostel Research Botanist, FEATURES Fort Worth Botanic Garden Botanical Research Institute of Texas and Director, GGI-Gardens NEWS FROM BGCI .... 06 Jean Linksy FEATURED GARDEN: THE NORTHWESTERN UNIVERSITY Magnolia Consortium Coordinator, ECOLOGICAL PARK & BOTANIC GARDENS .... 09 Atlanta Botanical Garden PLANT HUNTING TALES: GARDENS AND THEIR LESSONS: THE JOURNAL OF A BOTANY STUDENT Farahnoz Khojayori .... 13 Cover Photo: Young and aspiring scientists assist career scientists in sampling plants at the U.S. Botanic Garden for TALKING PLANTS: JONATHAN CODDINGTON, the Global Genome Initiative (U.S. Botanic Garden). DIRECTOR OF THE GLOBAL GENOME INITIATIVE .... 16 Design: Seascape www.seascapedesign.co.uk BGjournal is published by Botanic Gardens Conservation International (BGCI). It is published twice a year. Membership is open to all interested individuals, institutions and organisations that support the aims of BGCI. Further details available from: ARTICLES • Botanic Gardens Conservation International, Descanso House, 199 Kew Road, Richmond, Surrey TW9 3BW UK. Tel: +44 (0)20 8332 5953, Fax: +44 (0)20 8332 5956, E-mail: [email protected], www.bgci.org BANKING BOTANICAL BIODIVERSITY WITH THE GLOBAL GENOME • BGCI (US) Inc, The Huntington Library, BIODIVERSITY NETWORK (GGBN) Art Collections and Botanical Gardens, Ole Seberg, Gabi Dröge, Jonathan Coddington and Katharine Barker .... 19 1151 Oxford Rd, San Marino, CA 91108, USA. -
Sample Data Sharing Consent Form
PREAMBLE: NINDS has the expectation that investigators will use broad consent language that allows for the storing, sharing, and use of human subjects data and specimens for future research, even if such future research may be unrelated to the original study or disorder for which the data and/or specimens were collected. NINDS expects investigators to consider including such language (or similar language as mandated by your IRB) in your consent forms in order to ensure that samples and data are available for storing, sharing and use in future, unspecified research. This language should be included in the draft consent submitted with your application and submitted to NINDS in preparation for your start-up meeting if your application is funded (EXHIBIT 1). If genetic sample collection is a component of the study, then consent language is expected to include the sharing of large-scale genomic data and associated phenotypic data in the NIH Database of Genotypes and Phenotypes (dbGaP: http://www.ncbi.nlm.nih.gov/gap). If another database is chosen, this would require pre-approval by NINDS program staff. A final, IRB-approved consent that includes this or similar language (or an explanation for why it was not included) should be submitted to NINDS program staff prior to study activation. If you have questions or need assistance developing your consent language, please feel free to contact NINDS Clinical Research Liaison (any consents) and/or Ran Zhang (consents with genetic/genomic data language). *Please note that all studies that generate large-scale human genomic data , regardless of cost, should refer to the the NIH Genomic Data Sharing (GDS) Policy for additional requirements.