Caracterización Biológica Y Molecular De Un Rhabdovirus Causal De Mosaico Estriado Amarillo En Maíz (Zea Mays L.) En Argentina

Total Page:16

File Type:pdf, Size:1020Kb

Caracterización Biológica Y Molecular De Un Rhabdovirus Causal De Mosaico Estriado Amarillo En Maíz (Zea Mays L.) En Argentina TESIS DE DOCTORADO EN CIENCIAS BIOLÓGICAS Caracterización biológica y molecular de un rhabdovirus causal de mosaico estriado amarillo en maíz (Zea mays L.) en Argentina Bióloga María Fernanda Maurino Directora: Biol. (Dra.) Irma Graciela Laguna Desarrollada en el Instituto de Patología Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnología Agropecuaria (IPAVE-CIAP-INTA) FACULTAD DE CIENCIAS EXACTAS FÍSICAS Y NATURALES UNIVERSIDAD NACIONAL DE CÓRDOBA Córdoba, Argentina 2016 COMISIÓN ASESORA DE TESIS Dra. Irma Graciela Laguna, Instituto de Patología Vegetal (IPAVE, CIAP, INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) Dra. María Jimena Nores, Instituto Multidisciplinario de Biología Vegetal (IMBIV, CONICET, UNC) Dr. Guillermo Eyhérabide, Estación Experimental Agropecuaria INTA Pergamino (EEA INTA Pergamino) DEFENSA ORAL Y PÚBLICA Lugar y Fecha: Calificación: TRIBUNAL Firma: ............................................ Aclaración: .............................................. Firma: ............................................ Aclaración: .............................................. Firma: ............................................ Aclaración: .............................................. i Bióloga María Fernanda Maurino DEDICATORIA A mis padres, que siempre apoyaron todas mis decisiones y confiaron en mí incondicionalmente, no sólo en cuanto a lo profesional sino en todos los aspectos de la vida, guiando pero siempre con la libertad necesaria para hacerme sentir que podía lograr cualquier cosa que me propusiese. A la hermosa familia que formamos junto a la persona que elijo todos los días, son el motor y motivo de todas mis acciones. No me alcanzan las palabras para agradecerles por apoyarme y comprenderme en esta etapa, pero sobre todas las cosas por hacerme feliz a cada instante de mi vida. Este logro es para ustedes. ii Bióloga María Fernanda Maurino AGRADECIMIENTOS Quisiera agradecer a la Dra. Irma Graciela Laguna y la Dra. María de la Paz Giménez Pecci por su apoyo, guía y aliento constantes, y por confiar en mí en todo este proceso. Muchas gracias a la Dra. Claudia Nome por su asistencia en la sección de microscopía y al Dr. Fabián Giolitti por su apoyo intelectual en gran parte del proceso y técnico en el desarrollo del reactivo de diagnóstico serológico. A la Dra. Ana María Marino de Remes Lenicov por su asistencia en la identificación de los insectos estudiados y al Dr. Eduardo Virla por proveer de ejemplares de los mismos, para su utilización en esta tesis. Por último, aunque no menor, quisiera también agradecer a todos aquellos que desde uno u otro lugar me brindaron siempre su ayuda desinteresada y sin los cuales me hubiese resultado mucho más difícil esta tarea, compañeros de logros y alegrías pero también de frustraciones y desaciertos. iii Bióloga María Fernanda Maurino PUBLICACIONES DERIVADAS DE LA TESIS 2012. Maurino F., Nome C., Laguna I.G. y Giménez Pecci, M.P. Cap. VIII Virosis emergentes en maíz. En: Enfermedades del maíz producidas por virus y mollicutes en Argentina. Editores: Giménez Pecci M.P., Laguna I.G., Lenardon S.L. Ediciones INTA. Buenos Aires, 2012. Pág. 99-107. 2012. Maurino M.F., Laguna I.G., Giolitti F., Nome C. y Giménez Pecci M.P. First Occurrence of a Rhabdovirus Infecting Maize in Argentina. Plant Disease, Vol. 96 Issue 9, pág. 1383. iv Bióloga María Fernanda Maurino Índice de contenidos Índice de contenidos Índice de contenidos ......................................................................................................... v Índice de tablas y figuras .................................................................................................. 1 Abreviaturas...................................................................................................................... 4 Resumen ........................................................................................................................... 7 Summary ........................................................................................................................... 9 Introducción .................................................................................................................... 11 Hipótesis ......................................................................................................................... 21 Objetivo general ............................................................................................................. 21 Objetivos específicos ...................................................................................................... 21 Capítulo I: Localización y morfología de las partículas del virus en estudio................. 22 Introducción ............................................................................................................. 23 Materiales y Métodos .............................................................................................. 25 1-Colección de muestras .............................................................................. 25 2-Microscopía electrónica ........................................................................... 25 3-Caracterización de partículas virales. ....................................................... 26 Resultados ............................................................................................................... 26 1-Colección de muestras. ............................................................................. 26 3-Caracterización de las partículas virales. ................................................. 26 Conclusiones ........................................................................................................... 30 Capítulo II: Reconstrucción de las relaciones filogenéticas del rhabdovirus causal de estriado amarillo en maíz ................................................................................................ 31 Introducción ............................................................................................................. 32 Materiales y Métodos .............................................................................................. 35 1-Colección de muestras. ............................................................................. 35 v Índice de contenidos 2-Extracción de ARN y RT-PCR. ............................................................... 35 3-Clonado y secuenciación. ......................................................................... 36 4-Análisis de identidades nucleotídicas. ...................................................... 36 5-Análisis filogenético. ................................................................................ 39 Resultados ............................................................................................................... 39 1-Colección de muestras. ............................................................................. 39 2-Extracción de ARN y RT-PCR. ............................................................... 40 4-Análisis de identidades nucleotídicas ....................................................... 41 5-Análisis filogenético del gen de la polimerasa L. .................................... 43 Conclusiones ........................................................................................................... 45 Capítulo III: Evaluación, en condiciones experimentales, de insectos vectores del patógeno y de otros medios de transmisión ................................................................................... 46 Introducción ............................................................................................................. 47 Materiales y Métodos .............................................................................................. 49 1-Recolección de insectos delfácidos para cría. .......................................... 49 2-Transmisión mediante insectos vectores. ................................................. 49 3-Transmisión mediante incisiones vasculares (VPI).................................. 51 Resultados ............................................................................................................... 52 1-Recolección de insectos delfácidos para cría. .......................................... 52 2-Transmisión mediante insectos vectores. ................................................. 52 3-Transmisión mediante incisiones vasculares (VPI).................................. 55 Conclusiones ........................................................................................................... 55 Capítulo IV: Desarrollo de métodos de diagnóstico eficientes ...................................... 56 Introducción ............................................................................................................. 57 Materiales y métodos ............................................................................................... 59 1-Producción de un reactivo de diagnóstico molecular específico para MYSV ..................................................................................................................... 59 vi Índice de contenidos 2-Antisuero de virus parcialmente purificado. ............................................ 59 Resultados ............................................................................................................... 63 1-Producción de un reactivo de diagnóstico molecular específico para MYSV ....................................................................................................................
Recommended publications
  • A Novel Rhabdovirus Infecting Newly Discovered Nycteribiid Bat Flies
    www.nature.com/scientificreports OPEN Kanyawara Virus: A Novel Rhabdovirus Infecting Newly Discovered Nycteribiid Bat Flies Received: 19 April 2017 Accepted: 25 May 2017 Infesting Previously Unknown Published: xx xx xxxx Pteropodid Bats in Uganda Tony L. Goldberg 1,2,3, Andrew J. Bennett1, Robert Kityo3, Jens H. Kuhn4 & Colin A. Chapman3,5 Bats are natural reservoir hosts of highly virulent pathogens such as Marburg virus, Nipah virus, and SARS coronavirus. However, little is known about the role of bat ectoparasites in transmitting and maintaining such viruses. The intricate relationship between bats and their ectoparasites suggests that ectoparasites might serve as viral vectors, but evidence to date is scant. Bat flies, in particular, are highly specialized obligate hematophagous ectoparasites that incidentally bite humans. Using next- generation sequencing, we discovered a novel ledantevirus (mononegaviral family Rhabdoviridae, genus Ledantevirus) in nycteribiid bat flies infesting pteropodid bats in western Uganda. Mitochondrial DNA analyses revealed that both the bat flies and their bat hosts belong to putative new species. The coding-complete genome of the new virus, named Kanyawara virus (KYAV), is only distantly related to that of its closest known relative, Mount Elgon bat virus, and was found at high titers in bat flies but not in blood or on mucosal surfaces of host bats. Viral genome analysis indicates unusually low CpG dinucleotide depletion in KYAV compared to other ledanteviruses and rhabdovirus groups, with KYAV displaying values similar to rhabdoviruses of arthropods. Our findings highlight the possibility of a yet- to-be-discovered diversity of potentially pathogenic viruses in bat ectoparasites. Bats (order Chiroptera) represent the second largest order of mammals after rodents (order Rodentia).
    [Show full text]
  • Entry and Early Infection of Non-Segmented Negative Sense Rna Viruses
    University of Kentucky UKnowledge Theses and Dissertations--Molecular and Cellular Biochemistry Molecular and Cellular Biochemistry 2021 ENTRY AND EARLY INFECTION OF NON-SEGMENTED NEGATIVE SENSE RNA VIRUSES Jean Mawuena Branttie University of Kentucky, [email protected] Digital Object Identifier: https://doi.org/10.13023/etd.2021.248 Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Branttie, Jean Mawuena, "ENTRY AND EARLY INFECTION OF NON-SEGMENTED NEGATIVE SENSE RNA VIRUSES" (2021). Theses and Dissertations--Molecular and Cellular Biochemistry. 54. https://uknowledge.uky.edu/biochem_etds/54 This Doctoral Dissertation is brought to you for free and open access by the Molecular and Cellular Biochemistry at UKnowledge. It has been accepted for inclusion in Theses and Dissertations--Molecular and Cellular Biochemistry by an authorized administrator of UKnowledge. For more information, please contact [email protected]. STUDENT AGREEMENT: I represent that my thesis or dissertation and abstract are my original work. Proper attribution has been given to all outside sources. I understand that I am solely responsible for obtaining any needed copyright permissions. I have obtained needed written permission statement(s) from the owner(s) of each third-party copyrighted matter to be included in my work, allowing electronic distribution (if such use is not permitted by the fair use doctrine) which will be submitted to UKnowledge as Additional File. I hereby grant to The University of Kentucky and its agents the irrevocable, non-exclusive, and royalty-free license to archive and make accessible my work in whole or in part in all forms of media, now or hereafter known.
    [Show full text]
  • 2020 Taxonomic Update for Phylum Negarnaviricota (Riboviria: Orthornavirae), Including the Large Orders Bunyavirales and Mononegavirales
    Archives of Virology https://doi.org/10.1007/s00705-020-04731-2 VIROLOGY DIVISION NEWS 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Jens H. Kuhn1 · Scott Adkins2 · Daniela Alioto3 · Sergey V. Alkhovsky4 · Gaya K. Amarasinghe5 · Simon J. Anthony6,7 · Tatjana Avšič‑Županc8 · María A. Ayllón9,10 · Justin Bahl11 · Anne Balkema‑Buschmann12 · Matthew J. Ballinger13 · Tomáš Bartonička14 · Christopher Basler15 · Sina Bavari16 · Martin Beer17 · Dennis A. Bente18 · Éric Bergeron19 · Brian H. Bird20 · Carol Blair21 · Kim R. Blasdell22 · Steven B. Bradfute23 · Rachel Breyta24 · Thomas Briese25 · Paul A. Brown26 · Ursula J. Buchholz27 · Michael J. Buchmeier28 · Alexander Bukreyev18,29 · Felicity Burt30 · Nihal Buzkan31 · Charles H. Calisher32 · Mengji Cao33,34 · Inmaculada Casas35 · John Chamberlain36 · Kartik Chandran37 · Rémi N. Charrel38 · Biao Chen39 · Michela Chiumenti40 · Il‑Ryong Choi41 · J. Christopher S. Clegg42 · Ian Crozier43 · John V. da Graça44 · Elena Dal Bó45 · Alberto M. R. Dávila46 · Juan Carlos de la Torre47 · Xavier de Lamballerie38 · Rik L. de Swart48 · Patrick L. Di Bello49 · Nicholas Di Paola50 · Francesco Di Serio40 · Ralf G. Dietzgen51 · Michele Digiaro52 · Valerian V. Dolja53 · Olga Dolnik54 · Michael A. Drebot55 · Jan Felix Drexler56 · Ralf Dürrwald57 · Lucie Dufkova58 · William G. Dundon59 · W. Paul Duprex60 · John M. Dye50 · Andrew J. Easton61 · Hideki Ebihara62 · Toufc Elbeaino63 · Koray Ergünay64 · Jorlan Fernandes195 · Anthony R. Fooks65 · Pierre B. H. Formenty66 · Leonie F. Forth17 · Ron A. M. Fouchier48 · Juliana Freitas‑Astúa67 · Selma Gago‑Zachert68,69 · George Fú Gāo70 · María Laura García71 · Adolfo García‑Sastre72 · Aura R. Garrison50 · Aiah Gbakima73 · Tracey Goldstein74 · Jean‑Paul J. Gonzalez75,76 · Anthony Grifths77 · Martin H. Groschup12 · Stephan Günther78 · Alexandro Guterres195 · Roy A.
    [Show full text]
  • Comparison of Plant‐Adapted Rhabdovirus Protein Localization and Interactions
    University of Kentucky UKnowledge University of Kentucky Doctoral Dissertations Graduate School 2011 COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS Kathleen Marie Martin University of Kentucky, [email protected] Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Martin, Kathleen Marie, "COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS" (2011). University of Kentucky Doctoral Dissertations. 172. https://uknowledge.uky.edu/gradschool_diss/172 This Dissertation is brought to you for free and open access by the Graduate School at UKnowledge. It has been accepted for inclusion in University of Kentucky Doctoral Dissertations by an authorized administrator of UKnowledge. For more information, please contact [email protected]. ABSTRACT OF DISSERTATION Kathleen Marie Martin The Graduate School University of Kentucky 2011 COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS ABSTRACT OF DISSERTATION A dissertation submitted in partial fulfillment of the requirements for the Degree of Doctor of Philosophy in the College of Agriculture at the University of Kentucky By Kathleen Marie Martin Lexington, Kentucky Director: Dr. Michael M Goodin, Associate Professor of Plant Pathology Lexington, Kentucky 2011 Copyright © Kathleen Marie Martin 2011 ABSTRACT OF DISSERTATION COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS Sonchus yellow net virus (SYNV), Potato yellow dwarf virus (PYDV) and Lettuce Necrotic yellows virus (LNYV) are members of the Rhabdoviridae family that infect plants. SYNV and PYDV are Nucleorhabdoviruses that replicate in the nuclei of infected cells and LNYV is a Cytorhabdovirus that replicates in the cytoplasm. LNYV and SYNV share a similar genome organization with a gene order of Nucleoprotein (N), Phosphoprotein (P), putative movement protein (Mv), Matrix protein (M), Glycoprotein (G) and Polymerase protein (L).
    [Show full text]
  • 4 Introduction
    4 Introduction In 1967, in Marburg an der Lahn and Frankfurt ‘subtypes’ of a novel agent named ‘Ebola virus’ am Main, Germany1, and in Belgrade, Yugoslavia after the small Ebola river in Zaire [412, 1000, (now Serbia), laboratory workers accepted shipments 2410]. Today these ‘subtypes’ are called Sudan of African green monkeys (Chlorocebus aethiops) ebolavirus (SEBOV) and Zaire ebolavirus (ZEBOV), from Uganda. As they had done many times before respectively [805]. Studies of periodic hemorrhagic with such animals, workers performed routine ex- fever outbreaks in African countries and in the aminations for apparent ailments and then prepared Philippines indicated that at least two more ebola- tissue cultures from the monkeys’ kidneys for the viruses exist, which are now known as the Coote^ development of poliomyelitis vaccines. A few days d’Ivoire ebolavirus (CIEBOV) and Reston ebola- later, several workers were reported ill and were virus (REBOV) [805]. Molecular and other studies admitted to local hospitals. A total of 32 people revealed the close relationship of MARV and the fell sick with an apparently new disease, of which ebolaviruses, which resulted in their classification seven died. A hitherto unknown virus was isolated in the same viral family, Filoviridae (the filo- from patients and human tissues [2396] and called viruses2) [805]. ‘Marburg virus’ (today Lake Victoria marburgvirus, A substantial interest in filoviruses has developed MARV) [805]. Over the subsequent three decades, among the general public, in part because of novels, only individual MARV infections were recorded. popular science stories, and Hollywood productions In 1998, the virus reappeared in the Democratic that portrayed the horrendous diseases they cause.
    [Show full text]
  • Complete Sections As Applicable
    This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc (to be completed by ICTV Code assigned: 2016.017aM officers) Short title: One (1) new species in the genus Cytorhabdovirus, family Rhabdoviridae (e.g. 6 new species in the genus Zetavirus) Modules attached 2 3 4 5 (modules 1 and 11 are required) 6 7 8 9 10 Author(s): Colleen M. Higgins, Nicolas Bejerman, Ming Li, Anthony P. James, Ralf G. Dietzgen, Michael N. Pearson, Peter A. Revill, Robert M. Harding Corresponding author with e-mail address: Colleen Higgins; [email protected] List the ICTV study group(s) that have seen this proposal: A list of study groups and contacts is provided at http://www.ictvonline.org/subcommittees.asp . If ICTV Rhabdoviridae Study Group in doubt, contact the appropriate subcommittee chair (fungal, invertebrate, plant, prokaryote or vertebrate viruses) ICTV Study Group comments (if any) and response of the proposer: 11 members have advised support for the proposal; 1 member has not responded. Date first submitted to ICTV: 18 July, 2016 Date of this revision (if different to above): ICTV-EC comments and response of the proposer: Page 1 of 7 MODULE 2: NEW SPECIES creating and naming one or more new species.
    [Show full text]
  • Soybean Thrips (Thysanoptera: Thripidae) Harbor Highly Diverse Populations of Arthropod, Fungal and Plant Viruses
    viruses Article Soybean Thrips (Thysanoptera: Thripidae) Harbor Highly Diverse Populations of Arthropod, Fungal and Plant Viruses Thanuja Thekke-Veetil 1, Doris Lagos-Kutz 2 , Nancy K. McCoppin 2, Glen L. Hartman 2 , Hye-Kyoung Ju 3, Hyoun-Sub Lim 3 and Leslie. L. Domier 2,* 1 Department of Crop Sciences, University of Illinois, Urbana, IL 61801, USA; [email protected] 2 Soybean/Maize Germplasm, Pathology, and Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service, Urbana, IL 61801, USA; [email protected] (D.L.-K.); [email protected] (N.K.M.); [email protected] (G.L.H.) 3 Department of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon 300-010, Korea; [email protected] (H.-K.J.); [email protected] (H.-S.L.) * Correspondence: [email protected]; Tel.: +1-217-333-0510 Academic Editor: Eugene V. Ryabov and Robert L. Harrison Received: 5 November 2020; Accepted: 29 November 2020; Published: 1 December 2020 Abstract: Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified.
    [Show full text]
  • Occurrence and Alternation of Cytorhabdoviruses on Wheat in Northern China
    1472 Original Article OCCURRENCE AND ALTERNATION OF CYTORHABDOVIRUSES ON WHEAT IN NORTHERN CHINA OCORRÊNCIA E ALTERNÂNCIA DE CYTORHABDOVIRUS EM TRIGO NO NORTE DA CHINA Fei YANG 1, 2 ; Aihong ZHANG 2; Xiwang LI 2; Liangzhan HUO 2; Dianping DI 2*; Hongqin MIAO 2* 1. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China; 2. Plant Protection Institute of Hebei Academy of Agricultural and Forestry Sciences, IPM Center of Hebei Province, Key Laboratory of Integrated Pest Management on Crops in Northern Region of North China, Ministry of Agriculture, Baoding 071000, PR China. * [email protected]; [email protected]. ABSTRACT: Northern cereal mosaic cytorhabdovirus (NCMV) and Barley yellow striate mosaic cytorhabdovirus (BYSMV) are two of the most important viral pathogens of wheat. Northern China is the main wheat- producing region in the country. Wheat growing regions pertaining to four provinces, located in northern China, were surveyed for occurrence of NCMV and BYSMV during the growing seasons of the years 2010 and 2016. Wheat leaf samples were collected randomly from symptomatic plants displaying stunting, chlorotic stripes or mosaic. Roughly 73 samples were collected in the year 2010 from 13 fields, and 154 samples were collected in 2016 from 41 fields. Samples were tested for the presence of NCMV or BYSMV using multiplex reverse transcription-polymerase chain reaction (mRT- PCR). The results suggested that BYSMV (49.32% in 2010, 82.47% in 2016) is gradually replacing NCMV (87.67% in 2010, 13.64% in 2016) and becoming the main cytorhabdovirus in different wheat growing regions in northern China.
    [Show full text]
  • Cuestionario A1-T67
    JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI RI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI J I JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JR JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI RI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI J I JRI JRI JRI JRI JRI JRI JRI JRIGOBIERNO JRI JRI JRI JRI JRI JRI JRI JRI JRIMINISTERIO JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JR JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI RI JRI JRI JRI JRI JRI JRI JRI JRIDE JRI JRIESPAÑA JRI JRI JRI JRI JRI JRI DEJRI JRI CIENCIA JRI JRI JRI JRI JRI E JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI J I JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI JRI
    [Show full text]
  • Virus Pathogen Resource (Vipr) New Features in Vipr
    November 2012 Virus Pathogen Resource (ViPR) New Features in ViPR genome sequences with incomplete CDS. tool to allow primer design for a group of target News and Events Currently, the annotation pipeline has been sequences in the future . implemented to predict mature viral proteins for In response to user feedback, we have also added Join the ViPR User Advisory many taxa in the Arenaviridae , Bunyaviridae , end-of-line position numbers in the primer design Group to help us better serve Caliciviridae , Coronaviridae , Flaviviridae , and sequence input sequence box. This feature will the scientific community Togaviridae families in ViPR . help ensure accurate selection of the desired ViPR is a bioinformatics resources built for the target region within the displayed sequence. virology research community. We are calling for users to join the ViPR User Advisory Group to provide feedback and advise on ViPR Rock your development. Click here for details . protein structure IRD/ViPR hands-on workshops ViPR provides a ViPR will be providing a hands-on workshop customized at Mount Sinai School of Medicine, New interactive York, NY, December 5 . Please contact Ryan protein Camping ( [email protected] ) for structure workshop registration. viewer for virus-related protein structures obtained from the Protein Data Bank . In addition to PCR primer design tool enhanced choosing from a variety of structure display Sequence Conservation/ ViPR has recently implemented a PCR primer options , including ball & stick, line, space, primary Variation Analysis tutorial design tool , which uses the Primer3 algorithm to The Analyze Sequence Variation (SNP) tool in structure, secondary structure, etc., you can now predict the optimal set(s) of PCR primers for a ViPR provides the ability to quickly quantify rock a structure back and forth to get a better 3D particular sequence .
    [Show full text]
  • Rhabdoviridae.Pdf
    1 Rhabdoviridae Taxonomy Realm- Ribovira Kingdom- Orthornavirae Phylum- Negarnaviricota Subphylum-Haploviricotina Class- Monjiviricetes Order- Mononegaviriales Family- Rhabdoviridae Genus- Lyssavirus Genus-Ephemerovirus Rhabdoviridae: The family Derivation of names Rhabdoviridae: from rhabdos (Greek) meaning rod, referring to virion morphology. Member taxa Vertebrate host Lyssavirus Novirhabdovirus Perhabdovirus Sprivivirus Tupavirus Vertebrate host, arthropod vector Prepared by Dr. Vandana Gupta Page 1 2 Curiovirus Ephemerovirus Hapavirus Ledantevirus Sripuvirus Tibrovirus Vesiculovirus Invertebrate host Almendravirus Alphanemrhavirus Caligrhavirus Sigmavirus Plant host Cytorhabdovirus Dichorhavirus Nucleorhabdovirus Varicosavirus The family Rhabdoviridae includes 20 genera and 144 species of viruses with negative-sense, single-stranded RNA genomes of approximately 10–16 kb. Virions are typically enveloped with bullet-shaped or bacilliform morphology but non-enveloped filamentous virions have also been reported. The genomes are usually (but not always) single RNA molecules with partially complementary termini. Almost all rhabdovirus genomes have 5 genes encoding the structural proteins (N, P, M, G and L); however, many rhabdovirus genomes encode other proteins in additional genes or in alternative open reading frames (ORFs) within the structural protein genes. The family is ecologically diverse with members infecting plants or animals including mammals, birds, reptiles or fish. Rhabdoviruses are also detected in invertebrates,
    [Show full text]
  • Transmission of the Bean-Associated Cytorhabdovirus by the Whitefly
    viruses Article Transmission of the Bean-Associated Cytorhabdovirus by the Whitefly Bemisia tabaci MEAM1 Bruna Pinheiro-Lima 1,2,3, Rita C. Pereira-Carvalho 2, Dione M. T. Alves-Freitas 1 , Elliot W. Kitajima 4, Andreza H. Vidal 1,3, Cristiano Lacorte 1, Marcio T. Godinho 1, Rafaela S. Fontenele 5, Josias C. Faria 6 , Emanuel F. M. Abreu 1, Arvind Varsani 5,7 , Simone G. Ribeiro 1,* and Fernando L. Melo 2,3,* 1 Embrapa Recursos Genéticos e Biotecnologia, Brasília DF 70770-017, Brazil; [email protected] (B.P.-L.); [email protected] (D.M.T.A.-F.); [email protected] (A.H.V.); [email protected] (C.L.); [email protected] (M.T.G.); [email protected] (E.F.M.A.) 2 Departamento de Fitopatologia, Instituto de Biologia, Universidade de Brasília, Brasília DF 70275-970, Brazil; [email protected] 3 Departamento de Biologia Celular, Instituto de Biologia, Universidade de Brasília, Brasília DF 70275-970, Brazil 4 Departamento de Fitopatologia, Escola Superior de Agricultura Luiz de Queiroz, Piracicaba SP 13418-900, Brazil; [email protected] 5 The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA; [email protected] (R.S.F.); [email protected] (A.V.) 6 Embrapa Arroz e Feijão, Goiânia GO 75375-000, Brazil; [email protected] 7 Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Observatory, Cape Town 7701, South Africa * Correspondence: [email protected] (S.G.R.); fl[email protected] (F.L.M.) Received: 4 August 2020; Accepted: 11 September 2020; Published: 15 September 2020 Abstract: The knowledge of genomic data of new plant viruses is increasing exponentially; however, some aspects of their biology, such as vectors and host range, remain mostly unknown.
    [Show full text]