Modelling the Habitat Preference of Two Key Sphagnum Species in a Poor Fen As Controlled by 2 Capitulum Water Retention
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Biogeography, Community Structure and Biological Habitat Types of Subtidal Reefs on the South Island West Coast, New Zealand
Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand SCIENCE FOR CONSERVATION 281 Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand Nick T. Shears SCIENCE FOR CONSERVATION 281 Published by Science & Technical Publishing Department of Conservation PO Box 10420, The Terrace Wellington 6143, New Zealand Cover: Shallow mixed turfing algal assemblage near Moeraki River, South Westland (2 m depth). Dominant species include Plocamium spp. (yellow-red), Echinothamnium sp. (dark brown), Lophurella hookeriana (green), and Glossophora kunthii (top right). Photo: N.T. Shears Science for Conservation is a scientific monograph series presenting research funded by New Zealand Department of Conservation (DOC). Manuscripts are internally and externally peer-reviewed; resulting publications are considered part of the formal international scientific literature. Individual copies are printed, and are also available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Science & technical. © Copyright December 2007, New Zealand Department of Conservation ISSN 1173–2946 (hardcopy) ISSN 1177–9241 (web PDF) ISBN 978–0–478–14354–6 (hardcopy) ISBN 978–0–478–14355–3 (web PDF) This report was prepared for publication by Science & Technical Publishing; editing and layout by Lynette Clelland. Publication was approved by the Chief Scientist (Research, Development & Improvement Division), Department of Conservation, Wellington, New Zealand. In the interest of forest conservation, we support paperless electronic publishing. When printing, recycled paper is used wherever possible. CONTENTS Abstract 5 1. Introduction 6 2. -
7.014 Handout PRODUCTIVITY: the “METABOLISM” of ECOSYSTEMS
7.014 Handout PRODUCTIVITY: THE “METABOLISM” OF ECOSYSTEMS Ecologists use the term “productivity” to refer to the process through which an assemblage of organisms (e.g. a trophic level or ecosystem assimilates carbon. Primary producers (autotrophs) do this through photosynthesis; Secondary producers (heterotrophs) do it through the assimilation of the organic carbon in their food. Remember that all organic carbon in the food web is ultimately derived from primary production. DEFINITIONS Primary Productivity: Rate of conversion of CO2 to organic carbon (photosynthesis) per unit surface area of the earth, expressed either in terns of weight of carbon, or the equivalent calories e.g., g C m-2 year-1 Kcal m-2 year-1 Primary Production: Same as primary productivity, but usually expressed for a whole ecosystem e.g., tons year-1 for a lake, cornfield, forest, etc. NET vs. GROSS: For plants: Some of the organic carbon generated in plants through photosynthesis (using solar energy) is oxidized back to CO2 (releasing energy) through the respiration of the plants – RA. Gross Primary Production: (GPP) = Total amount of CO2 reduced to organic carbon by the plants per unit time Autotrophic Respiration: (RA) = Total amount of organic carbon that is respired (oxidized to CO2) by plants per unit time Net Primary Production (NPP) = GPP – RA The amount of organic carbon produced by plants that is not consumed by their own respiration. It is the increase in the plant biomass in the absence of herbivores. For an entire ecosystem: Some of the NPP of the plants is consumed (and respired) by herbivores and decomposers and oxidized back to CO2 (RH). -
Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-Rich, Geothermal Spring 2 3 Lewis M
bioRxiv preprint doi: https://doi.org/10.1101/428698; this version posted September 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring 2 3 Lewis M. Ward1,2,3*, Airi Idei4, Mayuko Nakagawa2,5, Yuichiro Ueno2,5,6, Woodward W. 4 Fischer3, Shawn E. McGlynn2* 5 6 1. Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138 USA 7 2. Earth-Life Science Institute, Tokyo Institute of Technology, Meguro, Tokyo, 152-8550, Japan 8 3. Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 9 91125 USA 10 4. Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, 11 Japan 12 5. Department of Earth and Planetary Sciences, Tokyo Institute of Technology, Meguro, Tokyo, 13 152-8551, Japan 14 6. Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth 15 Science and Technology, Natsushima-cho, Yokosuka 237-0061, Japan 16 Correspondence: [email protected] or [email protected] 17 18 Abstract 19 Hydrothermal systems, including terrestrial hot springs, contain diverse and systematic 20 arrays of geochemical conditions that vary over short spatial scales due to progressive interaction 21 between the reducing hydrothermal fluids, the oxygenated atmosphere, and in some cases 22 seawater. At Jinata Onsen, on Shikinejima Island, Japan, an intertidal, anoxic, iron- and 23 hydrogen-rich hot spring mixes with the oxygenated atmosphere and sulfate-rich seawater over 24 short spatial scales, creating an enormous range of redox environments over a distance ~10 m. -
Community Ecology
Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? An ecology mystery story If birds on Guam are declining due to… • hunting, then bird populations will be larger on military land where hunting is strictly prohibited. • habitat loss, then the amount of land cleared should be negatively correlated with bird numbers. • competition with introduced black drongo birds, then….prediction? • ……. come up with a different hypothesis and matching prediction! $3 million/yr Why not profitable hunting instead? (Worked for the passenger pigeon: “It was the demographic nightmare of overkill and impaired reproduction. If you’re killing a species far faster than they can reproduce, the end is a mathematical certainty.” http://www.audubon.org/magazine/may-june- 2014/why-passenger-pigeon-went-extinct) Community-wide effects of loss of birds Schueller 509: Lecture 12 Community ecology 1. The birds of Guam – e.g. of community interactions 2. What is a community? 3. What can we measure about whole communities? What is an ecological community? Community Ecology • Collection of populations of different species that occupy a given area. What is a community? e.g. Microbial community of one human “YOUR SKIN HARBORS whole swarming civilizations. Your lips are a zoo teeming with well- fed creatures. In your mouth lives a microbiome so dense —that if you decided to name one organism every second (You’re Barbara, You’re Bob, You’re Brenda), you’d likely need fifty lifetimes to name them all. -
Islands in the Stream 2002: Exploring Underwater Oases
Islands in the Stream 2002: Exploring Underwater Oases NOAA: Office of Ocean Exploration Mission Three: SUMMARY Discovery of New Resources with Pharmaceutical Potential (Pharmaceutical Discovery) Exploration of Vision and Bioluminescence in Deep-sea Benthos (Vision and Bioluminescence) Microscopic view of a Pachastrellidae sponge (front) and an example of benthic bioluminescence (back). August 16 - August 31, 2002 Shirley Pomponi, Co-Chief Scientist Tammy Frank, Co-Chief Scientist John Reed, Co-Chief Scientist Edie Widder, Co-Chief Scientist Pharmaceutical Discovery Vision and Bioluminescence Harbor Branch Oceanographic Institution Harbor Branch Oceanographic Institution ABSTRACT Harbor Branch Oceanographic Institution (HBOI) scientists continued their cutting-edge exploration searching for untapped sources of new drugs, examining the visual physiology of deep-sea benthos and characterizing the habitat in the South Atlantic Bight aboard the R/V Seaward Johnson from August 16-31, 2002. Over a half-dozen new species of sponges were recorded, which may provide scientists with information leading to the development of compounds used to study, treat, or diagnose human diseases. In addition, wondrous examples of bioluminescence and emission spectra were recorded, providing scientists with more data to help them understand how benthic organisms visualize their environment. New and creative Table of Contents ways to outreach and educate the public also Key Findings and Outcomes................................2 Rationale and Objectives ....................................4 -
Interactions Between Organisms . and Environment
INTERACTIONS BETWEEN ORGANISMS . AND ENVIRONMENT 2·1 FUNCTIONAL RELATIONSHIPS An understanding of the relationships between an organism and its environment can be attained only when the environmental factors that can be experienced by the organism are considered. This is difficult because it is first necessary for the ecologist to have some knowledge of the neurological and physiological detection abilities of the organism. Sound, for example, should be measured with an instrument that responds to sound energy in the same way that the organism being studied does. Snow depths should be measured in a manner that reflects their effect on the animal. If six inches of snow has no more effect on an animal than three inches, a distinction between the two depths is meaningless. Six inches is not twice three inches in terms of its effect on the animal! Lower animals differ from man in their response to environmental stimuli. Color vision, for example, is characteristic of man, monkeys, apes, most birds, some domesticated animals, squirrels, and, undoubtedly, others. Deer and other wild ungulates probably detect only shades of grey. Until definite data are ob tained on the nature of color vision in an animal, any measurement based on color distinctions could be misleading. Infrared energy given off by any object warmer than absolute zero (-273°C) is detected by thermal receptors on some animals. Ticks are sensitive to infrared radiation, and pit vipers detect warm prey with thermal receptors located on the anterior dorsal portion of the skull. Man can detect different levels of infrared radiation with receptors on the skin, but they are not directional nor are they as sensitive as those of ticks and vipers. -
Zero to Moderate Methane Emissions in a Densely
Zero to moderate methane emissions in a densely rooted, pristine Patagonian bog - biogeochemical controls as revealed from isotopic evidence Wiebke Münchberger1, 2, Klaus-Holger Knorr1, Christian Blodau1, †, Verónica A. Pancotto3, 4, Till 5 Kleinebecker2 1Ecohydrology and Biogeochemistry Research Group, Institute of Landscape Ecology, University of Muenster, Heisenbergstraße 2, 48149 Muenster, Germany 2Biodiversity and Ecosystem Research Group, Institute of Landscape Ecology, University of Muenster, Heisenbergstraße 2, 48149 Muenster, Germany 10 3Centro Austral de Investigaciones Científicas (CADIC-CONICET), B. Houssay 200, 9410 Ushuaia, Tierra del Fuego, Argentina 4Instituto de Ciencias Polares y Ambiente (ICPA-UNTDF), Fuegia Basket, 9410 Ushuaia, Tierra del Fuego, Argentina Correspondence to: Wiebke Münchberger ([email protected]), Klaus-Holger Knorr (kh.knorr@uni- 15 muenster.de) Abstract. Peatlands are significant global methane (CH4) sources, but processes governing CH4 dynamics have been predominantly studied on the northern hemisphere. Southern hemispheric and tropical bogs can be dominated by cushion- forming vascular plants (e.g. Astelia pumila, Donatia fascicularis). These cushion bogs are found in many (mostly southern) parts of the world but could also serve as extreme examples for densely rooted northern hemispheric bogs dominated by rushes 20 and sedges. We report highly variable summer CH4 emissions from different microforms in a Patagonian cushion bog as determined by chamber measurements. Driving biogeochemical processes were identified from pore water profiles and carbon isotopic signatures. An intensive root activity within a rhizosphere stretching over 2 m depth accompanied by molecular -1 oxygen release created aerobic microsites in water-saturated peat leading to a thorough CH4 oxidation (< 0.003 mmol L pore 13 -2 -1 water CH4, enriched δ C-CH4 by up to 10‰) and negligible emissions (0.09 ± 0.16 mmol CH4 m d ) from Astelia lawns. -
Interactions Between Photosynthesis and Respiration in an Aquatic Ecosystem
Interactions between Photosynthesis and Respiration in an Aquatic Ecosystem Jane E. Caldwell and Kristi Teagarden 53 Campus Drive, P.O. Box 6057 Dept. of Biology West Virginia University Morgantown, WV 26506 [email protected] (304)293-5201 extension 31459 [email protected] (304)293-5201 extension 31542 Abstract: Students measure the results of respiration and photosynthesis separately, combined, and in comparison to a non-living control “ecosystem”. The living ecosystem uses only snails and water plants. Oxygen, carbon dioxide, and ammonia nitrogen concentrations are measured with simple colorimetric and titration water tests using commercially available kits. The exercise is designed for large enrollment non-majors labs, but modifications for large and small classrooms are described. Introduction This lab exercise was developed for a freshman course for non-science majors at West Virginia University. The exercise asks students to apply their knowledge of basic metabolic processes to a series of simple aquatic ecosystems, which students monitor through water testing. These ecosystems consist of aquaria containing plants and/or snails with or without light exposure, and are compared against a non-living control system (an aquarium with water, light, and gravel). As they analyze their results, students observe the interplay of respiration, photosynthesis, protein digestion (or waste excretion), and decomposition through their effects on dissolved oxygen, carbon dioxide, and ammonia. Students synthesize these observations into written explanations of their results. During the course of the lab, students: • predict the relative levels of oxygen, carbon dioxide, and ammonia for various aquaria compared to a control aquarium. • observe and conduct titrimetric and colorimetric tests for dissolved compounds in water. -
Species List For: Labarque Creek CA 750 Species Jefferson County Date Participants Location 4/19/2006 Nels Holmberg Plant Survey
Species List for: LaBarque Creek CA 750 Species Jefferson County Date Participants Location 4/19/2006 Nels Holmberg Plant Survey 5/15/2006 Nels Holmberg Plant Survey 5/16/2006 Nels Holmberg, George Yatskievych, and Rex Plant Survey Hill 5/22/2006 Nels Holmberg and WGNSS Botany Group Plant Survey 5/6/2006 Nels Holmberg Plant Survey Multiple Visits Nels Holmberg, John Atwood and Others LaBarque Creek Watershed - Bryophytes Bryophte List compiled by Nels Holmberg Multiple Visits Nels Holmberg and Many WGNSS and MONPS LaBarque Creek Watershed - Vascular Plants visits from 2005 to 2016 Vascular Plant List compiled by Nels Holmberg Species Name (Synonym) Common Name Family COFC COFW Acalypha monococca (A. gracilescens var. monococca) one-seeded mercury Euphorbiaceae 3 5 Acalypha rhomboidea rhombic copperleaf Euphorbiaceae 1 3 Acalypha virginica Virginia copperleaf Euphorbiaceae 2 3 Acer negundo var. undetermined box elder Sapindaceae 1 0 Acer rubrum var. undetermined red maple Sapindaceae 5 0 Acer saccharinum silver maple Sapindaceae 2 -3 Acer saccharum var. undetermined sugar maple Sapindaceae 5 3 Achillea millefolium yarrow Asteraceae/Anthemideae 1 3 Actaea pachypoda white baneberry Ranunculaceae 8 5 Adiantum pedatum var. pedatum northern maidenhair fern Pteridaceae Fern/Ally 6 1 Agalinis gattingeri (Gerardia) rough-stemmed gerardia Orobanchaceae 7 5 Agalinis tenuifolia (Gerardia, A. tenuifolia var. common gerardia Orobanchaceae 4 -3 macrophylla) Ageratina altissima var. altissima (Eupatorium rugosum) white snakeroot Asteraceae/Eupatorieae 2 3 Agrimonia parviflora swamp agrimony Rosaceae 5 -1 Agrimonia pubescens downy agrimony Rosaceae 4 5 Agrimonia rostellata woodland agrimony Rosaceae 4 3 Agrostis elliottiana awned bent grass Poaceae/Aveneae 3 5 * Agrostis gigantea redtop Poaceae/Aveneae 0 -3 Agrostis perennans upland bent Poaceae/Aveneae 3 1 Allium canadense var. -
Habitat Evaluation: Guidance for the Review of Environmental Impact Assessment Documents
HABITAT EVALUATION: GUIDANCE FOR THE REVIEW OF ENVIRONMENTAL IMPACT ASSESSMENT DOCUMENTS EPA Contract No. 68-C0-0070 work Assignments B-21, 1-12 January 1993 Submitted to: Jim Serfis U.S. Environmental Protection Agency Office of Federal Activities 401 M Street, SW Washington, DC 20460 Submitted by: Mark Southerland Dynamac Corporation The Dynamac Building 2275 Research Boulevard Rockville, MD 20850 CONTENTS Page INTRODUCTION ... ...... .... ... ................................................. 1 Habitat Conservation .......................................... 2 Habitat Evaluation Methodology ................................... 2 Habitats of Concern ........................................... 3 Definition of Habitat ..................................... 4 General Habitat Types .................................... 5 Values and Services of Habitats ................................... 5 Species Values ......................................... 5 Biological diversity ...................................... 6 Ecosystem Services.. .................................... 7 Activities Impacting Habitats ..................................... 8 Land Conversion ....................................... 9 Land Conversion to Industrial and Residential Uses ............. 9 Land Conversion to Agricultural Uses ...................... 10 Land Conversion to Transportation Uses .................... 10 Timber Harvesting ...................................... 11 Grazing ............................................. 12 Mining ............................................. -
<I>Sphagnum</I> Peat Mosses
ORIGINAL ARTICLE doi:10.1111/evo.12547 Evolution of niche preference in Sphagnum peat mosses Matthew G. Johnson,1,2,3 Gustaf Granath,4,5,6 Teemu Tahvanainen, 7 Remy Pouliot,8 Hans K. Stenøien,9 Line Rochefort,8 Hakan˚ Rydin,4 and A. Jonathan Shaw1 1Department of Biology, Duke University, Durham, North Carolina 27708 2Current Address: Chicago Botanic Garden, 1000 Lake Cook Road Glencoe, Illinois 60022 3E-mail: [email protected] 4Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvagen¨ 18D, SE-752 36, Uppsala, Sweden 5School of Geography and Earth Sciences, McMaster University, Hamilton, Ontario, Canada 6Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, SE-750 07, Uppsala, Sweden 7Department of Biology, University of Eastern Finland, P.O. Box 111, 80101, Joensuu, Finland 8Department of Plant Sciences and Northern Research Center (CEN), Laval University Quebec, Canada 9Department of Natural History, Norwegian University of Science and Technology University Museum, Trondheim, Norway Received March 26, 2014 Accepted September 23, 2014 Peat mosses (Sphagnum)areecosystemengineers—speciesinborealpeatlandssimultaneouslycreateandinhabitnarrowhabitat preferences along two microhabitat gradients: an ionic gradient and a hydrological hummock–hollow gradient. In this article, we demonstrate the connections between microhabitat preference and phylogeny in Sphagnum.Usingadatasetof39speciesof Sphagnum,withan18-locusDNAalignmentandanecologicaldatasetencompassingthreelargepublishedstudies,wetested -
Physical Growing Media Characteristics of Sphagnum Biomass Dominated by Sphagnum Fuscum (Schimp.) Klinggr
Physical growing media characteristics of Sphagnum biomass dominated by Sphagnum fuscum (Schimp.) Klinggr. A. Kämäräinen1, A. Simojoki2, L. Lindén1, K. Jokinen3 and N. Silvan4 1 Department of Agricultural Sciences, University of Helsinki, Finland 2 Department of Food and Environmental Sciences, University of Helsinki, Finland 3 Natural Resources Institute Finland, Natural Resources and Bioproduction, Helsinki, Finland 4 Natural Resources Institute Finland, Bio-based Business and Industry, Parkano, Finland _______________________________________________________________________________________ SUMMARY The surface biomass of moss dominated by Sphagnum fuscum (Schimp.) Klinggr. (Rusty Bog-moss) was harvested from a sparsely drained raised bog. Physical properties of the Sphagnum moss were determined and compared with those of weakly and moderately decomposed peats. Water retention curves (WRC) and saturated hydraulic conductivities (Ks) are reported for samples of Sphagnum moss with natural structure, as well as for samples that were cut to selected fibre lengths or compacted to different bulk densities. The gravimetric water retention results indicate that, on a dry mass basis, Sphagnum moss can hold more water than both types of peat under equal matric potentials. On a volumetric basis, the water retention of Sphagnum moss can be linearly increased by compacting at a gravimetric water content of 2 (g water / g dry mass). The bimodal water retention curve of Sphagnum moss appears to be a consequence of the natural double porosity of the moss matrix. The 6-parameter form of the double-porosity van Genuchten equation is used to describe the volumetric water retention of the moss as its bulk density increases. Our results provide considerable insight into the physical growing media properties of Sphagnum moss biomass.