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Global Biodiversity Patterns of the Photobionts Associated with the Genus Cladonia (Lecanorales, Ascomycota)
Microbial Ecology https://doi.org/10.1007/s00248-020-01633-3 FUNGAL MICROBIOLOGY Global Biodiversity Patterns of the Photobionts Associated with the Genus Cladonia (Lecanorales, Ascomycota) Raquel Pino-Bodas1 & Soili Stenroos2 Received: 19 August 2020 /Accepted: 22 October 2020 # The Author(s) 2020 Abstract The diversity of lichen photobionts is not fully known. We studied here the diversity of the photobionts associated with Cladonia, a sub-cosmopolitan genus ecologically important, whose photobionts belong to the green algae genus Asterochloris. The genetic diversity of Asterochloris was screened by using the ITS rDNA and actin type I regions in 223 specimens and 135 species of Cladonia collected all over the world. These data, added to those available in GenBank, were compiled in a dataset of altogether 545 Asterochloris sequences occurring in 172 species of Cladonia. A high diversity of Asterochloris associated with Cladonia was found. The commonest photobiont lineages associated with this genus are A. glomerata, A. italiana,andA. mediterranea. Analyses of partitioned variation were carried out in order to elucidate the relative influence on the photobiont genetic variation of the following factors: mycobiont identity, geographic distribution, climate, and mycobiont phylogeny. The mycobiont identity and climate were found to be the main drivers for the genetic variation of Asterochloris. The geographical distribution of the different Asterochloris lineages was described. Some lineages showed a clear dominance in one or several climatic regions. In addition, the specificity and the selectivity were studied for 18 species of Cladonia. Potentially specialist and generalist species of Cladonia were identified. A correlation was found between the sexual reproduction frequency of the host and the frequency of certain Asterochloris OTUs. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Hypotrachyna Revoluta Species Fact Sheet
SPECIES FACT SHEET Common Name: Gray loop lichen Scientific Name: Hypotrachyna revoluta (Flörk) Hale Division: Ascomycota Class: Ascomycetes Order: Lecanorales Family: Parmeliaceae Technical Description: The genus Hypotrachyna is comprised of small foliose lichens, averaging 1-4 cm wide but up to 10 cm wide. The thallus is loosely appressed or loosely attached with ascending lobe tips. Soredia are present in Pacific Northwest specimens. Thallus lobes are thin and narrow, averaging 1-5 mm wide, and the sinuses between lobes are conspicuously rounded. The upper surface is greenish or grayish and somewhat shiny; the lower surface is black and shiny with forked rhizines that extend to or protrude beyond the lobe margins. The medulla is white and the photobiont is green. Apothecia are rare. (Goward et al. 1994, McCune and Geiser 1997, Johnson and Galloway 1999, Chen et al. 2003). Hypotrachyna revoluta is grayish, bluish, or if somewhat greenish, then not yellowish green. The lobes are relatively short and broad. Cilia at the margins are absent or if present, very sparse and less than 1 mm long. The soralia are broad and diffuse, with the loosely packed soredia giving them a coarse appearance. The rhizines are sparsely branched and are sparse to moderately dense, being progressively better developed toward the thallus center. The medulla is P-, K-, C+R, KC+R and the cortex is K+Y. This lichen is distinguished from similar species in the Pacific Northwest by the color of its upper surface in combination with lobe shape, soralia shape and characteristics of the cilia and rhizines (Goward et al. -
European Academic Research
EUROPEAN ACADEMIC RESEARCH Vol. II, Issue 2/ May 2014 Impact Factor: 3.1 (UIF) ISSN 2286-4822 DRJI Value: 5.9 (B+) www.euacademic.org The Order Lecanorales Nannf. in the Lichen Biota of Azerbaijan SЕVDA ALVERDIYEVA Institute of Botany Azerbaijan National Academy of Sciences Baku Azerbaijan Abstract: The order of Lecanorales lichen biota of Azerbaijan has been analyzed on the basis of long-term research and compilation of published data according to the new nomenclature changes. A species composition numbering 441 to date has been found. Among them, there are 7 species firstly referred for the lichen flora of Azerbaijan, 1 species for the Caucasus. Key words: order, Lecanorales, lichen biota, landscape species, family, Azerbaijan The order Lecanoromycetes refers to the Ascomysota department, the Lecanoromycetes class, the Lecanoromycetidae subclass. This is one of the largest lichenized Ascomycetes orders, covering more than 30 families. It includes 269 genus, 5695 species [13, 14]. In the lichen biota of Azerbaijan taxonomically (the number of families, genus and species), this procedure also takes a leading position and plays an important role for the formation of the lichen flora. 1779 Sеvda Alverdiyeva- The Order Lecanorales Nannf. in the Lichen Biota of Azerbaijan Materials and methods The material for this work was the results of years of research conducted by semi-permanent and synthesis of literature data [4, 5, 6, 7, 8, 9, 10, 11, 13]. Collection, herbarization and identification of lichens were carried by standard methods [12]. Specimens of the collection are stored in the Lichenological herbarium (LH) Institute of Botany National Academy of Sciences of Azerbaijan (Baku). -
Cladonia Norvegica Species Fact Sheet
SPECIES FACT SHEET Common Name: least powderhorn Scientific Name: Cladonia norvegica Tønsb. & Holien Division: Ascomycota Class: Ascomycetes Order: Lecanorales Family: Cladoniaceae Technical Description: Primary thallus of small leaf-like flaps (squamules) attached at their base to the substrate, with a green cortex on the upper surface and white or pale beneath, without a cortex; squamules 2 - 4 mm wide, deeply dissected, esorediate or with soredia beneath the tips. Hollow stalks (podetia) 1.5 - 3 cm tall, 0.5 - 2 mm wide, with thin cortex only at the base and occasionally just below the apothecia; podetia covered with fine soredia that are sparse in places, revealing the whitish hyphae of the medulla beneath; squamules rarely on the podetia;podetia tapering or cylindrical, narrow or thick, often with pycnidia at the tip instead of apothecia, rarely branched or with small cups. Apothecia, when present, resembling a pale brown bumpy head (capitate), wider than the podetium (see Peterson (no date) photograph referenced below). Photosynthetic partner (photosymbiont) a green alga (Trebouxia). Chemistry: P-, K-, UV+ bluish white Distinctive characters: P-, pale brown apothecia; podetia that are sorediate with only a small amount of cortex near the base. Similar species: Species in the genus Cladonia are difficult to identify because each can be so variable and because so many species exist in the Pacific Northwest. Thalli of several species are often found growing intermixed, so when working on a specimen, care must be taken to separate out podetia that look the same. Then do a P test: Cladonia coniocraea and C. ochrochloraoften occur with C. -
Alectorioid Morphologies in Paleogene Lichens: New Evidence and Re-Evaluation of the Fossil Alectoria Succini Mägdefrau
RESEARCH ARTICLE Alectorioid Morphologies in Paleogene Lichens: New Evidence and Re-Evaluation of the Fossil Alectoria succini Mägdefrau Ulla Kaasalainen1*, Jochen Heinrichs2, Michael Krings3, Leena Myllys4, Heinrich Grabenhorst5, Jouko Rikkinen6, Alexander R. Schmidt1 1 Department of Geobiology, University of Göttingen, Göttingen, Germany, 2 Department of Biology and Geobio-Center, University of Munich (LMU), Munich, Germany, 3 Department of Earth and Environmental Sciences, University of Munich (LMU), and Bavarian State Collection for Palaeontology and Geology, Munich, Germany, 4 Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland, 5 c/o Amber Study Group, Geological-Palaeontological Institute and Museum, University of Hamburg, Hamburg, Germany, 6 Department of Biosciences, University of Helsinki, Helsinki, Finland * [email protected] OPEN ACCESS Abstract Citation: Kaasalainen U, Heinrichs J, Krings M, One of the most important issues in molecular dating studies concerns the incorporation of Myllys L, Grabenhorst H, Rikkinen J, et al. (2015) Alectorioid Morphologies in Paleogene Lichens: New reliable fossil taxa into the phylogenies reconstructed from DNA sequence variation in ex- Evidence and Re-Evaluation of the Fossil Alectoria tant taxa. Lichens are symbiotic associations between fungi and algae and/or cyanobacte- succini Mägdefrau. PLoS ONE 10(6): e0129526. ria. Several lichen fossils have been used as minimum age constraints in recent studies doi:10.1371/journal.pone.0129526 concerning the diversification of the Ascomycota. Recent evolutionary studies of Lecanoro- Academic Editor: Peter Wilf, Penn State University, mycetes, an almost exclusively lichen-forming class in the Ascomycota, have utilized the UNITED STATES Eocene amber inclusion Alectoria succinic as a minimum age constraint. -
Genome-Wide Analyses of Biosynthetic Genes in Lichen
Genome-wide analyses of biosynthetic genes in lichen - forming fungi Dissertation zu Erlangung des Doktorgrades der Naturwissenschaften vorgelegt beim Fachbereich Biowissenschaften der Johann Wolfgang Goethe - Universität in Frankfurt am Main von Anjuli Calchera aus Frankfurt am Main Frankfurt (2019) (D 30) vom Fachbereich Biowissenschaften der Johann Wolfgang Goethe - Universität als Dissertation angenommen. Dekan: Prof. Dr. Sven Klimpel Institut für Ökologie, Evolution und Diversität Johann Wolfgang Goethe - Universität D-60438 Frankfurt am Main Gutachter: Prof. Dr. Imke Schmitt Institut für Ökologie, Evolution und Diversität Johann Wolfgang Goethe - Universität D-60438 Frankfurt am Main Prof. Dr. Markus Pfenninger Institut für Organismische und Molekulare Evolutionsbiologie Johannes Gutenberg - Universität Mainz D-55128 Mainz Datum der Disputation: 24.06.2020 This thesis is based on the following publications: Meiser,Meiser, A. A., Otte, J., Schmitt, I., & Dal Grande, F. (2017). Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi. Scientific Reports, 7(1), 14881, doi:10.1038/s41598-017-14576-6. Dal Grande, F., Meiser,Meiser, A. A., Greshake Tzovaras, B., Otte, J., Ebersberger, I., & Schmitt, I. (2018a). The draft genome of the lichen-forming fungus Lasallia hispanica (Frey) Sancho & A. Crespo. The Lichenologist, 50(3), 329–340, doi:10.1017/S002428291800021X. Calchera,Calchera, A. A., Dal Grande, F., Bode, H. B., & Schmitt, I. (2019). Biosynthetic gene content of the ’perfume lichens’ Evernia prunastri and Pseudevernia furfuracea. Molecules, 24(1), 203, doi:10.3390/molecules24010203. VII Contents 1. Abstract ......................................... 1 2. Introduction ....................................... 4 2.1. Natural products from fungi..........................4 2.2. Natural products from lichens.........................5 2.3. Lichen genomics..................................7 2.4. -
Medicinal Lichens: the Final Frontier by Brian Kie Weissbuch, L.Ac., RH (AHG)
J A H G Volume 12 | Number 2 Journal of the American Herbalists Guild 23 MATERIA MEDICA MATERIA Medicinal Lichens: The Final Frontier by Brian Kie Weissbuch, L.Ac., RH (AHG) erbalists of myriad traditions article discusses recent scienti!c research Brian Kie Weissbuch L.Ac., AHG, is an acupuncturist have explored the healing indicating important uses for well-known lichens in private practice since properties of life-forms from at (Cetraria islandica and Usnea spp.) as well as less 1991. Brian is a botanist least !ve kingdoms: Monera familiar species (Flavoparmelia caperata and and herbalist with 44 years (bacteria)*, Protista (algae), Lobaria pulmonaria ). experience, and is co- Fungi, Plantae, and Animalia *Recall the ancient Nubians’ crafting of founder of KW Botanicals H Inc. in San Anselmo, CA, (the latter being primarily the domain of TCM medicinal beers, rich in tetracycline from the providing medicinal herb practitioners, who use gecko, snake, oyster shell, soil-borne Streptomyces bacteria found on the brewers’ formulae to primary health various insects, and other animal-derived grain (Nelson et al 2010). This medicine was given to care practitioners since 1983. substances). Nevertheless, with few exceptions, children as well as adults. He provides continuing herbalists have neglected an important life-form in education seminars to our medicines: the symbiotic intersection of algae Cetraria islandica, C. spp. The Iceland acupuncturists, and classes in herbal medicine for herbalists and fungi with a history of over 600 million years Mosses and health care practitioners. on our wayward planet —the lichens. Any discussion of edible and medicinal lichens He can be reached at brian@ How little we know of this symbiotic life- must begin with Cetraria islandica and allied kwbotanicals.com. -
Phylogenetic Relationships and Species Concepts in Parmelia S. Str. (Parmeliaceae) Inferred from Nuclear ITS Rdna and -Tubulin Sequences
The Lichenologist 36(1): 37–54 (2004) 2004 The British Lichen Society DOI: 10.1017/S0024282904013933 Printed in the United Kingdom Phylogenetic relationships and species concepts in Parmelia s. str. (Parmeliaceae) inferred from nuclear ITS rDNA and -tubulin sequences María del Carmen MOLINA, Ana CRESPO, Oscar BLANCO, H. Thorsten LUMBSCH and David L. HAWKSWORTH Abstract: The phylogenetic relationships of 16 species of Parmelia s. str. are presented based on sequences of nuITS rDNA from 56 specimens, and -tubulin gene sequences from 29 collections. Parmelia serrana sp. nov. a Mediterranean species morphologically very close to P. saxatilis is described. Parmelia ernstiae is the sister-group to P. saxatilis s. str., and a further undescribed North American species of the P. saxatilis complex may require recognition. The isidiate P. squarrosa is closely allied to the sorediate P. sulcata, which is paraphyletic. Japanese samples of P. cochleata form a monophyletic group but too few collections of these were studied to reach firm conclusions regarding their relationships. An epitype is selected for the lectotype of Lichen saxatilis to unequivocally fix the application of that epithet. Key words: Ascomycota, cryptic species, Lecanorales, lichens, Linnean typification Introduction 1999), but not always where no such correlations exist (Clauzade & Roux 1985; The family Parmeliaceae is one of the largest Eriksson & Hawksworth 1986; Purvis et al. lichen-forming ascomycete families; in the 1992; Nimis 1993; Santesson 1993), wide sense it encompasses around 2300 pending clarification by molecular or other species placed in about 85 genera, 49 of studies. Molecular analyses have been them being described in the last two decades carried out to determine phylogenies in (Hawksworth et al.