Wnt Signalling and the Actin Cytoskeleton
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New Model IQGAP1.Pdf
NewmodelfortheinteractionofIQGAP1withCDC42andRAC1 KazemNouri1,DavidJ.Timson2,MohammadR.Ahmadian1 1InstituteofBiochemistryandMolecularBiologyII,MedicalfacultyoftheHeinrichͲHeineUniversity, 40225Düsseldorf,Germany;2SchoolofPharmacyandBiomolecularSciences,UniversityofBrighton, HuxleyBuilding,LewesRoad,BrightonBN24GJ,UnitedKingdom Correspondingauthor:Prof.Dr.MohammadRezaAhmadian,InstitutfürBiochemieund MolekularbiologieII,MedizinischeFakultätderHeinrichͲHeineͲUniversität,Universitätsstr.1, Gebäude22.03,40255Düsseldorf,Germany;Tel.:#49Ͳ211Ͳ8112384;#Fax:49Ͳ211Ͳ8112726;EͲmail: [email protected] Keywords:IQGAP1,RHOGTPases,RAC1,CDC42,RHOeffectors Shorttitle:IQGAP1interactionwithCDC42andRAC1 Abstract:Thespecificandrapidformationofproteincomplexes,involvingIQGAPfamilyproteins, isessentialfordiversecellularprocesses,suchasadhesion,polarization,anddirectional migration.AlthoughCDC42andRAC1,prominentmembersoftheRHOGTPasefamily,havebeen implicatedinbindingtoandactivatingIQGAP1,theexactnatureofthisproteinͲprotein recognitionprocesshasremainedobscure.Here,weproposeamechanisticframeworkmodel thatisbasedonamultipleͲstepbindingprocess,whichisaprerequisiteforthedynamicfunctions ofIQGAP1asascaffoldingproteinandacriticalmechanismintemporalregulationand integrationofcellularpathways. Abbreviations:CaM,calmodulin;CC,coiledͲcoilrepeatregion;CHD,calponinhomologydomain;CT, CͲterminaldomain;GAP,GTPaseͲactivatingprotein;GEF,guaninenucleotideexchangefactor;GDI, guaninenucleotidedissociationinhibitor;GRD,GAPͲrelateddomain;GST,glutathionͲSͲtransferase; -
Actin Cytoskeleton of Spread Fibroblasts Appears to Assemble at the Cell Edges
J. Cell Sd. 82, 235-248 (1986) 235 Printed in Great Britain © The Company of Biologists Limited 1986 ACTIN CYTOSKELETON OF SPREAD FIBROBLASTS APPEARS TO ASSEMBLE AT THE CELL EDGES TATJANA M. SVITKINA, ALEXANDER A. NEYFAKH, JR Laboratory of Molecular Biology and Bioorganic Chemistry, Moscow State University, Moscow 119899, USSR AND ALEXANDER D. BERSHADSKY All-Union Cancer Research Center, Academy of Medical Sciences, Moscow 115478, USSR SUMMARY The action of metabolic inhibitors on actin cytoskeleton of cultured quail embryo fibroblasts has been studied using electron microscopy of platinum replicas and immunofluorescence microscopy. Sodium azide as well as other inhibitors (oligomycin and dinitrophenol) caused the disassembly of all types of actin structures: actin meshwork at the cell active edges, microfilament sheath underlying the cell surface, and microfilament bundles. Studying the time- and dose-dependence of the destruction process we have found that the active edge meshwork and microfilament sheath are much more labile than microfilament bundles. After the removal of metabolic inhibitors actin cytoskeleton restoration begins at the cell edges. The first sign of this process is the formation of actin meshwork along the whole cell perimeter (l-10min of recovery). Sometimes fragments of this meshwork bend upwards forming ruffles. Later (10-20 min of recovery) the microfilament sheath appears at the cell periphery as a narrow band. The sheath seems to be formed from the edge meshwork, since ruffles in the process of transformation to sheath could be seen. During the following restoration the microfilament sheath gradually expands towards the cell centre. The last step of actin cytoskeleton restoration (60—120 min of recovery) is the formation of bundles. -
HTS-Tubulin Polymerization Assay Biochem Kit™
The Protein Manual Experts Cytoskeleton, Inc. V 8.0 HTS-Tubulin Polymerization Assay Biochem Kit™ (>97% pure tubulin, Porcine Tubulin) Cat. # BK004P Phone: (303) 322.2254 Fax: (303) 322.2257 Customer Service: [email protected] cytoskeleton.com Technical Support: [email protected] cytoskeleton.com Page 2 Manual Contents Section I: Introduction About Tubulin -------------------------------------------------------------------------- 5 About the BK004P polymerization Assay -------------------------------------- 6-7 Comparison of Polymerization Assays ----------------------------------------- 8-9 Section II: Purchaser Notification ------------------------------------------------------------ 10 Section III: Kit Contents ------------------------------------------------------------------------- 11-12 Section V: Reconstitution and Storage of Components ----------------------------- 13 Section IV: Important Technical Notes Notes on Updated version --------------------------------------------------------- 14 Spectrophotometer settings ------------------------------------------------------- 14 Spectrophotometer pathlength---------------------------------------------------- 15 Temperature & time dependence of polymerization ------------------------ 15 Recommended pipetting technique --------------------------------------------- 15-16 Tubulin protein stability ------------------------------------------------------------- 16 Test compound or protein preparation ------------------------------------------ 16-17 Section VI: Assay Protocol -
UCSD MOLECULE PAGES Doi:10.6072/H0.MP.A002549.01 Volume 1, Issue 2, 2012 Copyright UC Press, All Rights Reserved
UCSD MOLECULE PAGES doi:10.6072/H0.MP.A002549.01 Volume 1, Issue 2, 2012 Copyright UC Press, All rights reserved. Review Article Open Access WAVE2 Tadaomi Takenawa1, Shiro Suetsugu2, Daisuke Yamazaki3, Shusaku Kurisu1 WASP family verprolin-homologous protein 2 (WAVE2, also called WASF2) was originally identified by its sequence similarity at the carboxy-terminal VCA (verprolin, cofilin/central, acidic) domain with Wiskott-Aldrich syndrome protein (WASP) and N-WASP (neural WASP). In mammals, WAVE2 is ubiquitously expressed, and its two paralogs, WAVE1 (also called suppressor of cAMP receptor 1, SCAR1) and WAVE3, are predominantly expressed in the brain. The VCA domain of WASP and WAVE family proteins can activate the actin-related protein 2/3 (Arp2/3) complex, a major actin nucleator in cells. Proteins that can activate the Arp2/3 complex are now collectively known as nucleation-promoting factors (NPFs), and the WASP and WAVE families are a founding class of NPFs. The WAVE family has an amino-terminal WAVE homology domain (WHD domain, also called the SCAR homology domain, SHD) followed by the proline-rich region that interacts with various Src-homology 3 (SH3) domain proteins. The VCA domain located at the C-terminus. WAVE2, like WAVE1 and WAVE3, constitutively forms a huge heteropentameric protein complex (the WANP complex), binding through its WHD domain with Abi-1 (or its paralogs, Abi-2 and Abi-3), HSPC300 (also called Brick1), Nap1 (also called Hem-2 and NCKAP1), Sra1 (also called p140Sra1 and CYFIP1; its paralog is PIR121 or CYFIP2). The WANP complex is recruited to the plasma membrane by cooperative action of activated Rac GTPases and acidic phosphoinositides. -
Epithelial-Specific Knockout of the Rac1 Gene Leads to Enamel Defects
Eur J Oral Sci 2011; 119 (Suppl. 1): 168–176 Ó 2011 Eur J Oral Sci DOI: 10.1111/j.1600-0722.2011.00904.x European Journal of Printed in Singapore. All rights reserved Oral Sciences Zhan Huang1, Jieun Kim2, Rodrigo Epithelial-specific knockout of the Rac1 S. Lacruz1, Pablo Bringas Jr1, Michael Glogauer3, Timothy G. gene leads to enamel defects Bromage4, Vesa M. Kaartinen2, Malcolm L. Snead1 1The Center for Craniofacial Molecular Biology, Huang Z, Kim J, Lacruz RS, Bringas P Jr, Glogauer M, Bromage TG, Kaartinen VM, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, CA, USA; Snead ML. Epithelial-specific knockout of the Rac1 gene leads to enamel defects. 2 Eur J Oral Sci 2011; 119 (Suppl. 1): 168–176. Ó 2011 Eur J Oral Sci Department of Biologic and Materials Sciences, School of Dentistry, University of Michigan, Ann Arbor, MI, USA; 3Matrix The Ras-related C3 botulinum toxin substrate 1 (Rac1) gene encodes a 21-kDa GTP- Dynamics Group, Faculty of Dentistry, binding protein belonging to the RAS superfamily. RAS members play important University of Toronto, Toronto, Ontario, roles in controlling focal adhesion complex formation and cytoskeleton contraction, Canada; 4New York University College of activities with consequences for cell growth, adhesion, migration, and differentiation. Dentistry, New York, NY, USA To examine the role(s) played by RAC1 protein in cell–matrix interactions and enamel matrix biomineralization, we used the Cre/loxP binary recombination system to characterize the expression of enamel matrix proteins and enamel formation in Rac1 knockout mice (Rac1)/)). Mating between mice bearing the floxed Rac1 allele and mice bearing a cytokeratin 14-Cre transgene generated mice in which Rac1 was absent Zhan Huang, The Center for Craniofacial from epithelial organs. -
Conserved Microtubule–Actin Interactions in Cell Movement and Morphogenesis
REVIEW Conserved microtubule–actin interactions in cell movement and morphogenesis Olga C. Rodriguez, Andrew W. Schaefer, Craig A. Mandato, Paul Forscher, William M. Bement and Clare M. Waterman-Storer Interactions between microtubules and actin are a basic phenomenon that underlies many fundamental processes in which dynamic cellular asymmetries need to be established and maintained. These are processes as diverse as cell motility, neuronal pathfinding, cellular wound healing, cell division and cortical flow. Microtubules and actin exhibit two mechanistic classes of interactions — regulatory and structural. These interactions comprise at least three conserved ‘mechanochemical activity modules’ that perform similar roles in these diverse cell functions. Over the past 35 years, great progress has been made towards under- crosstalk occurs in processes that require dynamic cellular asymme- standing the roles of the microtubule and actin cytoskeletal filament tries to be established or maintained to allow rapid intracellular reor- systems in mechanical cellular processes such as dynamic shape ganization or changes in shape or direction in response to stimuli. change, shape maintenance and intracellular organelle movement. Furthermore, the widespread occurrence of these interactions under- These functions are attributed to the ability of polarized cytoskeletal scores their importance for life, as they occur in diverse cell types polymers to assemble and disassemble rapidly, and to interact with including epithelia, neurons, fibroblasts, oocytes and early embryos, binding proteins and molecular motors that mediate their regulated and across species from yeast to humans. Thus, defining the mecha- movement and/or assembly into higher order structures, such as radial nisms by which actin and microtubules interact is key to understand- arrays or bundles. -
Absence of NEFL in Patient-Specific Neurons in Early-Onset Charcot-Marie-Tooth Neuropathy Markus T
ARTICLE OPEN ACCESS Absence of NEFL in patient-specific neurons in early-onset Charcot-Marie-Tooth neuropathy Markus T. Sainio, MSc, Emil Ylikallio, MD, PhD, Laura M¨aenp¨a¨a, MSc, Jenni Lahtela, PhD, Pirkko Mattila, PhD, Correspondence Mari Auranen, MD, PhD, Johanna Palmio, MD, PhD, and Henna Tyynismaa, PhD Dr. Tyynismaa [email protected] Neurol Genet 2018;4:e244. doi:10.1212/NXG.0000000000000244 Abstract Objective We used patient-specific neuronal cultures to characterize the molecular genetic mechanism of recessive nonsense mutations in neurofilament light (NEFL) underlying early-onset Charcot- Marie-Tooth (CMT) disease. Methods Motor neurons were differentiated from induced pluripotent stem cells of a patient with early- onset CMT carrying a novel homozygous nonsense mutation in NEFL. Quantitative PCR, protein analytics, immunocytochemistry, electron microscopy, and single-cell transcriptomics were used to investigate patient and control neurons. Results We show that the recessive nonsense mutation causes a nearly total loss of NEFL messenger RNA (mRNA), leading to the complete absence of NEFL protein in patient’s cultured neurons. Yet the cultured neurons were able to differentiate and form neuronal networks and neuro- filaments. Single-neuron gene expression fingerprinting pinpointed NEFL as the most down- regulated gene in the patient neurons and provided data of intermediate filament transcript abundancy and dynamics in cultured neurons. Blocking of nonsense-mediated decay partially rescued the loss of NEFL mRNA. Conclusions The strict neuronal specificity of neurofilament has hindered the mechanistic studies of re- cessive NEFL nonsense mutations. Here, we show that such mutation leads to the absence of NEFL, causing childhood-onset neuropathy through a loss-of-function mechanism. -
Appropriate Roles of Cardiac Troponins in Evaluating Patients with Chest Pain
J Am Board Fam Pract: first published as 10.3122/jabfm.12.3.214 on 1 May 1999. Downloaded from MEDICAL PRACTICE Appropriate Roles of Cardiac Troponins in Evaluating Patients With Chest Pain Matthew S. Rice, MD, CPT, Me, USA, and David C. MacDonald, DO, Me, USA Background: Diagnosis of acute myocardial infarction relies upon the clinical history, interpretation of the electrocardiogram, and measurement of serum levels of cardiac enzymes. Newer biochemical markers of myocardial injury, such as cardiac troponin I and cardiac troponin T, are now being used instead of or along with the standard markers, the MB isoenzyme of creatine kinase (CK-MB) and lactate dehydrogenase. Methods: We performed a MEDLINE literature search (1987 to 1997) using the key words "troponin I," "troponin T," and "acute myocardial infarction." We reviewed selected articles related to the diagnostic and prognostic usefulness of these cardiac markers in evaluating patients with suspected myocardial infarction. Results: We found that (1) troponin I is a better cardiac marker than CK-MB for myocardial infarction because it is equally sensitive yet more specific for myocardial injury; (2) troponin T is a relatively poorer cardiac marker than CK-MB because it is less sensitive and less specific for myocardial injury; and (3) both troponin I and troponin T may be used as independent prognosticators of future cardiac events. Conclusions: Troponin I is a sensitive and specific marker for myocardial injury and can be used to predict the likelihood of future cardiac events. It is not much more expensive to measure than CK-MB. Over all, troponin I is a better cardiac marker than CK-MB and should become the preferred cardiac enzyme when evaluating patients with suspected myocardial infarction. -
The Kinesin Walk: a Dynamic Model with Elastically Coupled Heads
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 6775-6779, June 1996 Biophysics The kinesin walk: A dynamic model with elastically coupled heads IMRE DERENYI AND TAMA'S VICSEK Department of Atomic Physics, Eotvos University, Budapest, Puskin u 5-7, 1088 Hungary Communicated by Leo P. Kadanoff, University of Chicago, Chicago, IL, February 26, 1996 (received for review November 28, 1995) ABSTRACT Recently individual two-headed kinesin mol- of the related transport phenomena. These models (12-19), ecules have been studied in in vitro motility assays revealing a except that of Ajdari (20), consider cases in which the internal number of their peculiar transport properties. In this paper degree of freedom of the molecular motors is not taken into we propose a simple and robust model for the kinesin stepping account. The purpose of the present work is to define and process with elastically coupled Brownian heads that show all investigate a dynamic model for the kinesin walk that has an of these properties. The analytic and numerical treatment of internal degree of freedom and results in a full agreement with our model results in a very good fit to the experimental data the experimental data for the range of its parameters allowed and practically has no free parameters. Changing the values by the known estimates for the lower and upper bounds of ofthe parameters in the restricted range allowed by the related these parameters. experimental estimates has almost no effect on the shape of There are two basic classes of possible models for the the curves and results mainly in a variation of the zero load stepping of kinesin (21). -
Kinesin Motility Is Driven by Subdomain Dynamics Wonmuk Hwang1,2,3*, Matthew J Lang4,5*, Martin Karplus6,7*
RESEARCH ARTICLE Kinesin motility is driven by subdomain dynamics Wonmuk Hwang1,2,3*, Matthew J Lang4,5*, Martin Karplus6,7* 1Department of Biomedical Engineering, Texas A&M University, College Station, United States; 2Department of Materials Science & Engineering, Texas A&M University, College Station, United States; 3School of Computational Sciences, Korea Institute for Advanced Study, Seoul, Korea; 4Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, United States; 5Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, United States; 6Department of Chemistry and Chemical Biology, Harvard University, Cambridge, United States; 7Laboratoire de Chimie Biophysique, ISIS, Universite´ de Strasbourg, Strasbourg, France Abstract The microtubule (MT)-associated motor protein kinesin utilizes its conserved ATPase head to achieve diverse motility characteristics. Despite considerable knowledge about how its ATPase activity and MT binding are coupled to the motility cycle, the atomic mechanism of the core events remain to be found. To obtain insights into the mechanism, we performed 38.5 microseconds of all-atom molecular dynamics simulations of kinesin-MT complexes in different nucleotide states. Local subdomain dynamics were found to be essential for nucleotide processing. Catalytic water molecules are dynamically organized by the switch domains of the nucleotide binding pocket while ATP is torsionally strained. Hydrolysis products are ’pulled’ by switch-I, and a new ATP is ’captured’ by a concerted motion of the a0/L5/switch-I trio. The dynamic and wet kinesin-MT interface is tuned for rapid interactions while maintaining specificity. The proposed *For correspondence: mechanism provides the flexibility necessary for walking in the crowded cellular environment. [email protected] (WH); DOI: https://doi.org/10.7554/eLife.28948.001 [email protected] (MJL); [email protected] (MK) Competing interests: The authors declare that no Introduction competing interests exist. -
Familial Adenomatous Polyposis Polymnia Galiatsatos, M.D., F.R.C.P.(C),1 and William D
American Journal of Gastroenterology ISSN 0002-9270 C 2006 by Am. Coll. of Gastroenterology doi: 10.1111/j.1572-0241.2006.00375.x Published by Blackwell Publishing CME Familial Adenomatous Polyposis Polymnia Galiatsatos, M.D., F.R.C.P.(C),1 and William D. Foulkes, M.B., Ph.D.2 1Division of Gastroenterology, Department of Medicine, The Sir Mortimer B. Davis Jewish General Hospital, McGill University, Montreal, Quebec, Canada, and 2Program in Cancer Genetics, Departments of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada Familial adenomatous polyposis (FAP) is an autosomal-dominant colorectal cancer syndrome, caused by a germline mutation in the adenomatous polyposis coli (APC) gene, on chromosome 5q21. It is characterized by hundreds of adenomatous colorectal polyps, with an almost inevitable progression to colorectal cancer at an average age of 35 to 40 yr. Associated features include upper gastrointestinal tract polyps, congenital hypertrophy of the retinal pigment epithelium, desmoid tumors, and other extracolonic malignancies. Gardner syndrome is more of a historical subdivision of FAP, characterized by osteomas, dental anomalies, epidermal cysts, and soft tissue tumors. Other specified variants include Turcot syndrome (associated with central nervous system malignancies) and hereditary desmoid disease. Several genotype–phenotype correlations have been observed. Attenuated FAP is a phenotypically distinct entity, presenting with fewer than 100 adenomas. Multiple colorectal adenomas can also be caused by mutations in the human MutY homologue (MYH) gene, in an autosomal recessive condition referred to as MYH associated polyposis (MAP). Endoscopic screening of FAP probands and relatives is advocated as early as the ages of 10–12 yr, with the objective of reducing the occurrence of colorectal cancer. -
Microtubule-Associated Protein Tau (Molecular Pathology/Neurodegenerative Disease/Neurofibriliary Tangles) M
Proc. Nati. Acad. Sci. USA Vol. 85, pp. 4051-4055, June 1988 Medical Sciences Cloning and sequencing of the cDNA encoding a core protein of the paired helical filament of Alzheimer disease: Identification as the microtubule-associated protein tau (molecular pathology/neurodegenerative disease/neurofibriliary tangles) M. GOEDERT*, C. M. WISCHIK*t, R. A. CROWTHER*, J. E. WALKER*, AND A. KLUG* *Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, United Kingdom; and tDepartment of Psychiatry, University of Cambridge Clinical School, Hills Road, Cambridge CB2 2QQ, United Kingdom Contributed by A. Klug, March 1, 1988 ABSTRACT Screening of cDNA libraries prepared from (21). This task is made all the more difficult because there is the frontal cortex ofan zheimer disease patient and from fetal no functional or physiological assay for the protein(s) of the human brain has led to isolation of the cDNA for a core protein PHF. The only identification so far possible is the morphol- of the paired helical fiament of Alzheimer disease. The partial ogy of the PHFs at the electron microscope level, and here amino acid sequence of this core protein was used to design we would accept only experiments on isolated individual synthetic oligonucleotide probes. The cDNA encodes a protein of filaments, not on neurofibrillary tangles (in which other 352 amino acids that contains a characteristic amino acid repeat material might be occluded). One thus needs a label or marker in its carboxyl-terminal half. This protein is highly homologous for the PHF itself, which can at the same time be used to to the sequence ofthe mouse microtubule-assoiated protein tau follow the steps of the biochemical purification.