Two Bioactive Molecular Weight Fractions of a Conditioned Medium Enhance RPE Cell Survival on Age-Related Macular Degeneration and Aged Bruch’S Membrane
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Migration-Selection Balance Drives Genetic Differentiation in Genes Associated with High-Altitude Function in the Speckled
GBE Migration-Selection Balance Drives Genetic Differentiation in Genes Associated with High-Altitude Function in the Speckled Teal (Anas flavirostris) in the Andes Downloaded from https://academic.oup.com/gbe/article-abstract/10/1/14/4685994 by University of Texas at El Paso user on 18 January 2019 Allie M. Graham1,*, Philip Lavretsky2, Violeta Munoz-Fuentes~ 3,4,AndyJ.Green4,RobertE.Wilson5,and Kevin G. McCracken1,5,6,7 1Department of Biology, University of Miami 2Department of Biological Sciences, University of Texas El Paso 3European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom 4Estacion Biologica de Donana,~ EBD-CSIC, Sevilla, Spain 5Institute of Arctic Biology and University of Alaska Museum, University of Alaska, Fairbanks 6Rosenstiel School of Marine and Atmospheric Sciences, University of Miami 7John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine *Corresponding author: E-mail: [email protected]. Accepted: November 30, 2017 Data deposition: DNA sequence GenBank accession information is available in supplementary table S2, Supplementary Material online. Parsed Illumina reads for the RAD-Seq data sets are already available through NCBI short read archive (SRA PRJEB11624). Abstract Local adaptation frequently occurs across populations as a result of migration-selection balance between divergent selective pressures and gene flow associated with life in heterogeneous landscapes. Studying the effects of selection and gene flow on the adaptation process can be achieved in systems that have recently colonized extreme environments. This study utilizes an endemic South American duck species, the speckled teal (Anas flavirostris), which has both high- and low-altitude populations. -
Proteome and Secretome Dynamics of Human Retinal Pigment Epithelium in Response to Reactive Oxygen Species Jesse G
www.nature.com/scientificreports OPEN Proteome and Secretome Dynamics of Human Retinal Pigment Epithelium in Response to Reactive Oxygen Species Jesse G. Meyer 1,2*, Thelma Y. Garcia1, Birgit Schilling 1, Bradford W. Gibson1,3 & Deepak A. Lamba 1,4* Age-related macular degeneration (AMD) is the leading cause of blindness in developed countries, and is characterized by slow retinal degeneration linked to chronic reactive oxygen species (ROS) in the retinal pigmented epithelium (RPE). The molecular mechanisms leading to RPE dysfunction in response to ROS are unclear. Here, human stem cell-derived RPE samples were stressed with ROS for 1 or 3 weeks, and both intracellular and secreted proteomes were quantifed by mass spectrometry. ROS increased glycolytic proteins but decreased mitochondrial complex I subunits, as well as membrane proteins required for endocytosis. RPE secreted over 1,000 proteins, many of which changed signifcantly due to ROS. Notably, secreted APOE is decreased 4-fold, and urotensin-II, the strongest known vasoconstrictor, doubled. Furthermore, secreted TGF-beta is increased, and its cognate signaler BMP1 decreased in the secretome. Together, our results paint a detailed molecular picture of the retinal stress response in space and time. AMD is the leading cause of blindness in people over age 50, and represents an area of signifcant unmet clin- ical need. AMD is characterized by retinal degeneration in the center of the retina, the macula. Tree tissues comprise a minimally functional unit of the retina, RPE is the epithelial layer between the light-sensitive photo- receptors (PRs) and vasculature (choroid). RPE is especially important among this triplet because it forms the outer blood-retinal barrier due to the tight-junctions between the cells. -
(Glb1l3) in the Retinal Pigment Epithelium (RPE)-Specific 65-Kda Protein Knock- out Mouse Model of Leber’S Congenital Amaurosis
Molecular Vision 2011; 17:1287-1297 <http://www.molvis.org/molvis/v17/a144> © 2011 Molecular Vision Received 13 August 2009 | Accepted 3 May 2011 | Published 7 May 2011 Altered expression of β-galactosidase-1-like protein 3 (Glb1l3) in the retinal pigment epithelium (RPE)-specific 65-kDa protein knock- out mouse model of Leber’s congenital amaurosis Joane Le Carré,1 Daniel F. Schorderet,1,2,3 Sandra Cottet1,2 1IRO, Institute for Research in Ophthalmology, Sion, Switzerland; 2Department of Ophthalmology, University of Lausanne; Switzerland; 3School of Life Sciences, Federal Institute of Technology (EPFL), Lausanne, Switzerland Purpose: In this study, we investigated the expression of the gene encoding β-galactosidase (Glb)-1-like protein 3 (Glb1l3), a member of the glycosyl hydrolase 35 family, during retinal degeneration in the retinal pigment epithelium (RPE)-specific 65-kDa protein knockout (Rpe65−/−) mouse model of Leber congenital amaurosis (LCA). Additionally, we assessed the expression of the other members of this protein family, including β-galactosidase-1 (Glb1), β- galactosidase-1-like (Glb1l), and β-galactosidase-1-like protein 2 (Glb1l2). Methods: The structural features of Glb1l3 were assessed using bioinformatic tools. mRNA expression of Glb-related genes was investigated by oligonucleotide microarray, real-time PCR, and reverse transcription (RT) -PCR. The localized expression of Glb1l3 was assessed by combined in situ hybridization and immunohistochemistry. Results: Glb1l3 was the only Glb-related member strongly downregulated in Rpe65−/− retinas before the onset and during progression of the disease. Glb1l3 mRNA was only expressed in the retinal layers and the RPE/choroid. The other Glb- related genes were ubiquitously expressed in different ocular tissues, including the cornea and lens. -
Molecular Signature of Primary Retinal Pigment Epithelium and Stem-Cell-Derived RPE Cells
Human Molecular Genetics, 2010, Vol. 19, No. 21 4229–4238 doi:10.1093/hmg/ddq341 Advance Access published on August 13, 2010 Molecular signature of primary retinal pigment epithelium and stem-cell-derived RPE cells Jo-Ling Liao1, Juehua Yu1, Kevin Huang1, Jane Hu2, Tanja Diemer2, Zhicheng Ma1, Tamar Dvash1, Xian-Jie Yang2, Gabriel H. Travis2, David S. Williams2, Dean Bok2 and Guoping Fan1,∗ 1Department of Human Genetics and 2Jules Stein Eye Institute, David Geffen School of Medicine, University Downloaded from https://academic.oup.com/hmg/article/19/21/4229/665882 by guest on 25 September 2021 of California Los Angeles, Los Angeles, CA, USA Received May 26, 2010; Revised July 25, 2010; Accepted August 9, 2010 Age-related macular degeneration (AMD) is characterized by the loss or dysfunction of retinal pigment epithelium (RPE) and is the most common cause of vision loss among the elderly. Stem-cell-based strategies, using human embryonic stem cells (hESCs) or human-induced pluripotent stem cells (hiPSCs), may provide an abundant donor source for generating RPE cells in cell replacement therapies. Despite a significant amount of research on deriving functional RPE cells from various stem cell sources, it is still unclear whether stem-cell-derived RPE cells fully mimic primary RPE cells. In this report, we demonstrate that functional RPE cells can be derived from multiple lines of hESCs and hiPSCs with varying efficiencies. Stem-cell-derived RPE cells exhibit cobblestone-like morphology, transcripts, proteins and phagocytic function similar to human fetal RPE (fRPE) cells. In addition, we performed global gene expression profiling of stem-cell-derived RPE cells, native and cultured fRPE cells, undifferentiated hESCs and fibroblasts to determine the differentiation state of stem-cell-derived RPE cells. -
Towards the Identification of Causal Genes for Age-Related Macular
bioRxiv preprint doi: https://doi.org/10.1101/778613; this version posted September 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Towards the identification of causal genes for age-related macular degeneration 2 3 Fei-Fei Cheng1,2,3,5, You-Yuan Zhuang1,2,5, Xin-Ran Wen1,2, Angli Xue4, Jian Yang3,4,6,*, Zi-Bing 4 Jin1,2,6,* 5 6 1Division of Ophthalmic Genetics, The Eye Hospital, Wenzhou Medical University, Wenzhou 325027, 7 China; 8 2National Center for International Research in Regenerative Medicine and Neurogenetics, National 9 Clinical Research Center for Ophthalmology, State Key Laboratory of Ophthalmology, Optometry and 10 Visual Science, Wenzhou, 325027 China; 11 3Institute for Advanced Research, Wenzhou Medical University, Wenzhou 325035, China; 12 4Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, 4072, 13 Australia; 14 5These authors contributed equally. 15 6These authors jointly supervised this work. 16 *Correspondence: Zi-Bing Jin <[email protected]> or Jian Yang <[email protected]>. 17 18 Abstract 19 Age-related macular degeneration (AMD) is a leading cause of visual impairment in ageing 20 populations and has no radical treatment or prevention. Although genome-wide association studies 21 (GWAS) have identified many susceptibility loci for AMD, the underlying causal genes remain 22 elusive. Here, we prioritized nine putative causal genes by integrating expression quantitative trait 23 locus (eQTL) data from blood (푛 = 2,765) with AMD GWAS data (16,144 cases vs. -
Datasheet: MCA2691P750 Product Details
Datasheet: MCA2691P750 Description: RAT ANTI MOUSE CD4:RPE-Alexa Fluor® 750 Specificity: CD4 Other names: L3T4 ANTIGEN, LY-4 Format: RPE-ALEXA FLUOR® 750 Product Type: Monoclonal Antibody Clone: RM4-5 Isotype: IgG2a Quantity: 100 TESTS Product Details Applications This product has been reported to work in the following applications. This information is derived from testing within our laboratories, peer-reviewed publications or personal communications from the originators. Please refer to references indicated for further information. For general protocol recommendations, please visit www.bio-rad-antibodies.com/protocols. Yes No Not Determined Suggested Dilution Flow Cytometry Neat Where this product has not been tested for use in a particular technique this does not necessarily exclude its use in such procedures. Suggested working dilutions are given as a guide only. It is recommended that the user titrates the product for use in their own system using appropriate negative/positive controls. Target Species Mouse Product Form Purified IgG conjugated to RPE-Alexa Fluor 750 - lyophilized Reconstitution Reconstitute with 1.0 ml distilled water Care should be taken during reconstitution as the protein may appear as a film at the bottom of the vial. Bio-Rad recommend that the vial is gently mixed after reconstitution. Max Ex/Em Fluorophore Excitation Max (nm) Emission Max (nm) RPE-Alexa Fluor®750 496 779 488nm laser RPE-Alexa Fluor®750 546 779 561nm laser Preparation Purified IgG prepared by affinity chromatography on Protein G from tissue culture supernatant Buffer Solution Phosphate buffered saline Preservative 0.09% Sodium Azide (NaN3) Stabilisers 1% Bovine Serum Albumin 5% Sucrose Immunogen BALB/c mouse thymocytes Page 1 of 3 External Database Links UniProt: P06332 Related reagents Entrez Gene: 12504 Cd4 Related reagents Specificity Rat anti Mouse CD4 antibody, clone RM4-5 detects mouse CD4, a 55 kDa protein also known as Ly-4 and L3T4. -
The Application of Mouse and Human Embryonic Stem Cells with Transcriptomics in Alternative Developmental Toxicity Tests
The application of mouse and human embryonic stem cells with transcriptomics in alternative developmental toxicity tests A bridge from model species to man Sjors Schulpen © Copyright All rights reserved. No part of this publication may be reproduced or transmitted in any form by any means without permission of the author. ISBN: 978-94-6203-861-5 Cover and layout: Maud van Deursen, Utrecht the Netherlands Production: CPI/ Wöhrmann Print Service, Zutphen the Netherlands The application of mouse and human embryonic stem cells with transcriptomics in alternative developmental toxicity tests A bridge from model species to man De toepassing van embryonale stamcellen van muis en mens met transcriptomics in alternatieve testen voor ontwikkelingstoxiciteit Een brug van modelorganisme naar de mens (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. G.J. van der Zwaan, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op dinsdag 7 juli 2015 des middags te 2.30 uur door Sjors Hubertus Wilhelmina Schulpen geboren op 5 januari 1983 te Sittard Promotoren: Prof. dr. A.H. Piersma Prof. dr. M. van den Berg Dit proefschrift werd mogelijk gemaakt door financiële steun van: Institute for Risk Assessment Sciences van de Universiteit Utrecht, Laboratorium voor gezondheidsbeschermingsonderzoek van het Rijksinstituut voor Volksgezondheid en Mileu, Greiner Bio-One en Stichting Proefdiervrij. Contents Abbreviations 6 -
Drosophila STING Protein Has a Role in Lipid Metabolism
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.04.429825; this version posted February 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Drosophila STING protein has a role in lipid metabolism. Katarina Akhmetova, Maxim Balasov and Igor Chesnokov*. Department of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, School of Medicine, 720 20th Street South, Birmingham, Alabama 35294 Running head: The role of dSTING in metabolism. *Corresponding Author. Mailing address: Department of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, School of Medicine, 720 20th Street South, Birmingham, Alabama 35294. Phone: (205) 934- 6974. Fax: (205) 934-0758. E-mail: [email protected]. bioRxiv preprint doi: https://doi.org/10.1101/2021.02.04.429825; this version posted February 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. ABSTRACT Stimulator of interferon genes (STING) plays an important role in innate immunity by controlling type I interferon response against invaded pathogens. In this work we describe a direct but previously unknown role of STING in lipid metabolism in Drosophila. Flies with STING deletion are sensitive to starvation and oxidative stress, have reduced lipid storage and downregulated expression of lipid metabolism genes. -
Cell-Deposited Matrix Improves Retinal Pigment Epithelium Survival on Aged Submacular Human Bruch’S Membrane
Retinal Cell Biology Cell-Deposited Matrix Improves Retinal Pigment Epithelium Survival on Aged Submacular Human Bruch’s Membrane Ilene K. Sugino,1 Vamsi K. Gullapalli,1 Qian Sun,1 Jianqiu Wang,1 Celia F. Nunes,1 Noounanong Cheewatrakoolpong,1 Adam C. Johnson,1 Benjamin C. Degner,1 Jianyuan Hua,1 Tong Liu,2 Wei Chen,2 Hong Li,2 and Marco A. Zarbin1 PURPOSE. To determine whether resurfacing submacular human most, as cell survival is the worst on submacular Bruch’s Bruch’s membrane with a cell-deposited extracellular matrix membrane in these eyes. (Invest Ophthalmol Vis Sci. 2011;52: (ECM) improves retinal pigment epithelial (RPE) survival. 1345–1358) DOI:10.1167/iovs.10-6112 METHODS. Bovine corneal endothelial (BCE) cells were seeded onto the inner collagenous layer of submacular Bruch’s mem- brane explants of human donor eyes to allow ECM deposition. here is no fully effective therapy for the late complications of age-related macular degeneration (AMD), the leading Control explants from fellow eyes were cultured in medium T cause of blindness in the United States. The prevalence of only. The deposited ECM was exposed by removing BCE. Fetal AMD-associated choroidal new vessels (CNVs) and/or geo- RPE cells were then cultured on these explants for 1, 14, or 21 graphic atrophy (GA) in the U.S. population 40 years and older days. The explants were analyzed quantitatively by light micros- is estimated to be 1.47%, with 1.75 million citizens having copy and scanning electron microscopy. Surviving RPE cells from advanced AMD, approximately 100,000 of whom are African explants cultured for 21 days were harvested to compare bestro- American.1 The prevalence of AMD increases dramatically with phin and RPE65 mRNA expression. -
Transdifferentiation of Human Mesenchymal Stem Cells
Transdifferentiation of Human Mesenchymal Stem Cells Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg vorgelegt von Tatjana Schilling aus San Miguel de Tucuman, Argentinien Würzburg, 2007 Eingereicht am: Mitglieder der Promotionskommission: Vorsitzender: Prof. Dr. Martin J. Müller Gutachter: PD Dr. Norbert Schütze Gutachter: Prof. Dr. Georg Krohne Tag des Promotionskolloquiums: Doktorurkunde ausgehändigt am: Hiermit erkläre ich ehrenwörtlich, dass ich die vorliegende Dissertation selbstständig angefertigt und keine anderen als die von mir angegebenen Hilfsmittel und Quellen verwendet habe. Des Weiteren erkläre ich, dass diese Arbeit weder in gleicher noch in ähnlicher Form in einem Prüfungsverfahren vorgelegen hat und ich noch keinen Promotionsversuch unternommen habe. Gerbrunn, 4. Mai 2007 Tatjana Schilling Table of contents i Table of contents 1 Summary ........................................................................................................................ 1 1.1 Summary.................................................................................................................... 1 1.2 Zusammenfassung..................................................................................................... 2 2 Introduction.................................................................................................................... 4 2.1 Osteoporosis and the fatty degeneration of the bone marrow..................................... 4 2.2 Adipose and bone -
Proteoglycan Form and Function: a Comprehensive Nomenclature of Proteoglycans
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Matrix Biol Manuscript Author . Author manuscript; Manuscript Author available in PMC 2016 May 06. Published in final edited form as: Matrix Biol. 2015 March ; 42: 11–55. doi:10.1016/j.matbio.2015.02.003. Proteoglycan form and function: A comprehensive nomenclature of proteoglycans Renato V. Iozzo1 and Liliana Schaefer2 1Department of Pathology, Anatomy and Cell Biology and the Cancer Cell Biology and Signaling Program, Kimmel Cancer Center, Sidney Kimmel Medical College at Thomas Jefferson University, Philadelphia, PA 19107, USA 2Pharmazentrum Frankfurt/ZAFES, Institut für Allgemeine Pharmakologie und Toxikologie, Klinikum der Goethe-Universität Frankfurt am Main, Frankfurt am Main, Germany Abstract We provide a comprehensive classification of the proteoglycan gene families and respective protein cores. This updated nomenclature is based on three criteria: Cellular and subcellular location, overall gene/protein homology, and the utilization of specific protein modules within their respective protein cores. These three signatures were utilized to design four major classes of proteoglycans with distinct forms and functions: the intracellular, cell-surface, pericellular and extracellular proteoglycans. The proposed nomenclature encompasses forty-three distinct proteoglycan-encoding genes and many alternatively-spliced variants. The biological functions of these four proteoglycan families are critically assessed in development, cancer and angiogenesis, and in various acquired and genetic diseases where their expression is aberrant. Keywords Proteoglycan; Glycosaminoglycan; Cancer growth; Angiogenesis; Growth factor modulation Introduction It has been nearly 20 years since the original publication of a comprehensive classification of proteoglycan gene families [1]. For the most part, these classes have been widely accepted. However, a broad and current taxonomy of the various proteoglycan gene families and their products is not available. -
Functional Annotation of the Human Retinal Pigment Epithelium
BMC Genomics BioMed Central Research article Open Access Functional annotation of the human retinal pigment epithelium transcriptome Judith C Booij1, Simone van Soest1, Sigrid MA Swagemakers2,3, Anke HW Essing1, Annemieke JMH Verkerk2, Peter J van der Spek2, Theo GMF Gorgels1 and Arthur AB Bergen*1,4 Address: 1Department of Molecular Ophthalmogenetics, Netherlands Institute for Neuroscience (NIN), an institute of the Royal Netherlands Academy of Arts and Sciences (KNAW), Meibergdreef 47, 1105 BA Amsterdam, the Netherlands (NL), 2Department of Bioinformatics, Erasmus Medical Center, 3015 GE Rotterdam, the Netherlands, 3Department of Genetics, Erasmus Medical Center, 3015 GE Rotterdam, the Netherlands and 4Department of Clinical Genetics, Academic Medical Centre Amsterdam, the Netherlands Email: Judith C Booij - [email protected]; Simone van Soest - [email protected]; Sigrid MA Swagemakers - [email protected]; Anke HW Essing - [email protected]; Annemieke JMH Verkerk - [email protected]; Peter J van der Spek - [email protected]; Theo GMF Gorgels - [email protected]; Arthur AB Bergen* - [email protected] * Corresponding author Published: 20 April 2009 Received: 10 July 2008 Accepted: 20 April 2009 BMC Genomics 2009, 10:164 doi:10.1186/1471-2164-10-164 This article is available from: http://www.biomedcentral.com/1471-2164/10/164 © 2009 Booij et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.