Discrete Morse Theory and Its Applications
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Contractions of Polygons in Abstract Polytopes
Contractions of Polygons in Abstract Polytopes by Ilya Scheidwasser B.S. in Computer Science, University of Massachusetts Amherst M.S. in Mathematics, Northeastern University A dissertation submitted to The Faculty of the College of Science of Northeastern University in partial fulfillment of the requirements for the degree of Doctor of Philosophy March 31, 2015 Dissertation directed by Egon Schulte Professor of Mathematics Acknowledgements First, I would like to thank my advisor, Professor Egon Schulte. From the first class I took with him in the first semester of my Masters program, Professor Schulte was an engaging, clear, and kind lecturer, deepening my appreciation for mathematics and always more than happy to provide feedback and answer extra questions about the material. Every class with him was a sincere pleasure, and his classes helped lead me to the study of abstract polytopes. As my advisor, Professor Schulte provided me with invaluable assistance in the creation of this thesis, as well as career advice. For all the time and effort Professor Schulte has put in to my endeavors, I am greatly appreciative. I would also like to thank my dissertation committee for taking time out of their sched- ules to provide me with feedback on this thesis. In addition, I would like to thank the various instructors I've had at Northeastern over the years for nurturing my knowledge of and interest in mathematics. I would like to thank my peers and classmates at Northeastern for their company and their assistance with my studies, and the math department's Teaching Committee for the privilege of lecturing classes these past several years. -
On Finding Two Posets That Cover Given Linear Orders
algorithms Article On Finding Two Posets that Cover Given Linear Orders Ivy Ordanel 1,*, Proceso Fernandez, Jr. 2 and Henry Adorna 1 1 Department of Computer Science, University of the Philippines Diliman, Quezon City 1101, Philippines; [email protected] 2 Department of Information Sytems and Computer Science, Ateneo De Manila University, Quezon City 1108, Philippines; [email protected] * Correspondence: [email protected] Received: 13 August 2019; Accepted: 17 October 2019; Published: 19 October 2019 Abstract: The Poset Cover Problem is an optimization problem where the goal is to determine a minimum set of posets that covers a given set of linear orders. This problem is relevant in the field of data mining, specifically in determining directed networks or models that explain the ordering of objects in a large sequential dataset. It is already known that the decision version of the problem is NP-Hard while its variation where the goal is to determine only a single poset that covers the input is in P. In this study, we investigate the variation, which we call the 2-Poset Cover Problem, where the goal is to determine two posets, if they exist, that cover the given linear orders. We derive properties on posets, which leads to an exact solution for the 2-Poset Cover Problem. Although the algorithm runs in exponential-time, it is still significantly faster than a brute-force solution. Moreover, we show that when the posets being considered are tree-posets, the running-time of the algorithm becomes polynomial, which proves that the more restricted variation, which we called the 2-Tree-Poset Cover Problem, is also in P. -
Summary of Morse Theory
Summary of Morse Theory One central theme in geometric topology is the classification of selected classes of smooth manifolds up to diffeomorphism . Complete information on this problem is known for compact 1 – dimensional and 2 – dimensional smooth manifolds , and an extremely good understanding of the 3 – dimensional case now exists after more than a century of work . A closely related theme is to describe certain families of smooth manifolds in terms of relatively simple decompositions into smaller pieces . The following quote from http://en.wikipedia.org/wiki/Morse_theory states things very briefly but clearly : In differential topology , the techniques of Morse theory give a very direct way of analyzing the topology of a manifold by studying differentiable functions on that manifold . According to the basic insights of Marston Morse , a differentiable function on a manifold will , in a typical case, reflect the topology quite directly . Morse theory allows one to find CW [cell complex] structures and handle decompositions on manifolds and to obtain substantial information about their homology . Morse ’s approach to studying the structure of manifolds was a crucial idea behind the following breakthrough result which S. Smale obtained about 50 years ago : If n a compact smooth manifold M (without boundary) is homotopy equivalent to the n n n sphere S , where n ≥ 5, then M is homeomorphic to S . — Earlier results of J. Milnor constructed a smooth 7 – manifold which is homeomorphic but not n n diffeomorphic to S , so one cannot strengthen the conclusion to say that M is n diffeomorphic to S . We shall use Morse ’s approach to retrieve some low – dimensional classification and decomposition results which were obtained before his theory was developed . -
Confluent Hasse Diagrams
Confluent Hasse diagrams David Eppstein Joseph A. Simons Department of Computer Science, University of California, Irvine, USA. October 29, 2018 Abstract We show that a transitively reduced digraph has a confluent upward drawing if and only if its reachability relation has order dimension at most two. In this case, we construct a confluent upward drawing with O(n2) features, in an O(n) × O(n) grid in O(n2) time. For the digraphs representing series-parallel partial orders we show how to construct a drawing with O(n) fea- tures in an O(n) × O(n) grid in O(n) time from a series-parallel decomposition of the partial order. Our drawings are optimal in the number of confluent junctions they use. 1 Introduction One of the most important aspects of a graph drawing is that it should be readable: it should convey the structure of the graph in a clear and concise way. Ease of understanding is difficult to quantify, so various proxies for readability have been proposed; one of the most prominent is the number of edge crossings. That is, we should minimize the number of edge crossings in our drawing (a planar drawing, if possible, is ideal), since crossings make drawings harder to read. Another measure of readability is the total amount of ink required by the drawing [1]. This measure can be formulated in terms of Tufte’s “data-ink ratio” [22,35], according to which a large proportion of the ink on any infographic should be devoted to information. Thus given two different ways to present information, we should choose the more succinct and crossing-free presentation. -
Persistent Homology of Unweighted Complex Networks Via Discrete
www.nature.com/scientificreports OPEN Persistent homology of unweighted complex networks via discrete Morse theory Received: 17 January 2019 Harish Kannan1, Emil Saucan2,3, Indrava Roy1 & Areejit Samal 1,4 Accepted: 6 September 2019 Topological data analysis can reveal higher-order structure beyond pairwise connections between Published: xx xx xxxx vertices in complex networks. We present a new method based on discrete Morse theory to study topological properties of unweighted and undirected networks using persistent homology. Leveraging on the features of discrete Morse theory, our method not only captures the topology of the clique complex of such graphs via the concept of critical simplices, but also achieves close to the theoretical minimum number of critical simplices in several analyzed model and real networks. This leads to a reduced fltration scheme based on the subsequence of the corresponding critical weights, thereby leading to a signifcant increase in computational efciency. We have employed our fltration scheme to explore the persistent homology of several model and real-world networks. In particular, we show that our method can detect diferences in the higher-order structure of networks, and the corresponding persistence diagrams can be used to distinguish between diferent model networks. In summary, our method based on discrete Morse theory further increases the applicability of persistent homology to investigate the global topology of complex networks. In recent years, the feld of topological data analysis (TDA) has rapidly grown to provide a set of powerful tools to analyze various important features of data1. In this context, persistent homology has played a key role in bring- ing TDA to the fore of modern data analysis. -
Spring 2016 Tutorial Morse Theory
Spring 2016 Tutorial Morse Theory Description Morse theory is the study of the topology of smooth manifolds by looking at smooth functions. It turns out that a “generic” function can reflect quite a lot of information of the background manifold. In Morse theory, such “generic” functions are called “Morse functions”. By definition, a Morse function on a smooth manifold is a smooth function whose Hessians are non-degenerate at critical points. One can prove that every smooth function can be perturbed to a Morse function, hence we think of Morse functions as being “generic”. Roughly speaking, there are two different ways to study the topology of manifolds using a Morse function. The classical approach is to construct a cellular decomposition of the manifold by the Morse function. Each critical point of the Morse function corresponds to a cell, with dimension equals the number of negative eigenvalues of the Hessian matrix. Such an approach is very successful and yields lots of interesting results. However, for some technical reasons, this method cannot be generalized to infinite dimensions. Later on people developed another method that can be generalized to infinite dimensions. This new theory is now called “Floer theory”. In the tutorial, we will start from the very basics of differential topology and introduce both the classical and Floer-theory approaches of Morse theory. Then we will talk about some of the most important and interesting applications in history of Morse theory. Possible topics include but are not limited to: Smooth h- Cobordism Theorem, Generalized Poincare Conjecture in higher dimensions, Lefschetz Hyperplane Theorem, and the existence of closed geodesics on compact Riemannian manifolds, and so on. -
Operations on Partially Ordered Sets and Rational Identities of Type a Adrien Boussicault
Operations on partially ordered sets and rational identities of type A Adrien Boussicault To cite this version: Adrien Boussicault. Operations on partially ordered sets and rational identities of type A. Discrete Mathematics and Theoretical Computer Science, DMTCS, 2013, Vol. 15 no. 2 (2), pp.13–32. hal- 00980747 HAL Id: hal-00980747 https://hal.inria.fr/hal-00980747 Submitted on 18 Apr 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Discrete Mathematics and Theoretical Computer Science DMTCS vol. 15:2, 2013, 13–32 Operations on partially ordered sets and rational identities of type A Adrien Boussicault Institut Gaspard Monge, Universite´ Paris-Est, Marne-la-Valle,´ France received 13th February 2009, revised 1st April 2013, accepted 2nd April 2013. − −1 We consider the family of rational functions ψw = Q(xwi xwi+1 ) indexed by words with no repetition. We study the combinatorics of the sums ΨP of the functions ψw when w describes the linear extensions of a given poset P . In particular, we point out the connexions between some transformations on posets and elementary operations on the fraction ΨP . We prove that the denominator of ΨP has a closed expression in terms of the Hasse diagram of P , and we compute its numerator in some special cases. -
Graph Reconstruction by Discrete Morse Theory Arxiv:1803.05093V2 [Cs.CG] 21 Mar 2018
Graph Reconstruction by Discrete Morse Theory Tamal K. Dey,∗ Jiayuan Wang,∗ Yusu Wang∗ Abstract Recovering hidden graph-like structures from potentially noisy data is a fundamental task in modern data analysis. Recently, a persistence-guided discrete Morse-based framework to extract a geometric graph from low-dimensional data has become popular. However, to date, there is very limited theoretical understanding of this framework in terms of graph reconstruction. This paper makes a first step towards closing this gap. Specifically, first, leveraging existing theoretical understanding of persistence-guided discrete Morse cancellation, we provide a simplified version of the existing discrete Morse-based graph reconstruction algorithm. We then introduce a simple and natural noise model and show that the aforementioned framework can correctly reconstruct a graph under this noise model, in the sense that it has the same loop structure as the hidden ground-truth graph, and is also geometrically close. We also provide some experimental results for our simplified graph-reconstruction algorithm. 1 Introduction Recovering hidden structures from potentially noisy data is a fundamental task in modern data analysis. A particular type of structure often of interest is the geometric graph-like structure. For example, given a collection of GPS trajectories, recovering the hidden road network can be modeled as reconstructing a geometric graph embedded in the plane. Given the simulated density field of dark matters in universe, finding the hidden filamentary structures is essentially a problem of geometric graph reconstruction. Different approaches have been developed for reconstructing a curve or a metric graph from input data. For example, in computer graphics, much work have been done in extracting arXiv:1803.05093v2 [cs.CG] 21 Mar 2018 1D skeleton of geometric models using the medial axis or Reeb graphs [10, 29, 20, 16, 22, 7]. -
Appendix an Overview of Morse Theory
Appendix An Overview of Morse Theory Morse theory is a beautiful subject that sits between differential geometry, topol- ogy and calculus of variations. It was first developed by Morse [Mor25] in the middle of the 1920s and further extended, among many others, by Bott, Milnor, Palais, Smale, Gromoll and Meyer. The general philosophy of the theory is that the topology of a smooth manifold is intimately related to the number and “type” of critical points that a smooth function defined on it can have. In this brief ap- pendix we would like to give an overview of the topic, from the classical point of view of Morse, but with the more recent extensions that allow the theory to deal with so-called degenerate functions on infinite-dimensional manifolds. A compre- hensive treatment of the subject can be found in the first chapter of the book of Chang [Cha93]. There is also another, more recent, approach to the theory that we are not going to touch on in this brief note. It is based on the so-called Morse complex. This approach was pioneered by Thom [Tho49] and, later, by Smale [Sma61] in his proof of the generalized Poincar´e conjecture in dimensions greater than 4 (see the beautiful book of Milnor [Mil56] for an account of that stage of the theory). The definition of Morse complex appeared in 1982 in a paper by Witten [Wit82]. See the book of Schwarz [Sch93], the one of Banyaga and Hurtubise [BH04] or the survey of Abbondandolo and Majer [AM06] for a modern treatment. -
LNCS 7034, Pp
Confluent Hasse Diagrams DavidEppsteinandJosephA.Simons Department of Computer Science, University of California, Irvine, USA Abstract. We show that a transitively reduced digraph has a confluent upward drawing if and only if its reachability relation has order dimen- sion at most two. In this case, we construct a confluent upward drawing with O(n2)features,inanO(n) × O(n)gridinO(n2)time.Forthe digraphs representing series-parallel partial orders we show how to con- struct a drawing with O(n)featuresinanO(n)×O(n)gridinO(n)time from a series-parallel decomposition of the partial order. Our drawings are optimal in the number of confluent junctions they use. 1 Introduction One of the most important aspects of a graph drawing is that it should be readable: it should convey the structure of the graph in a clear and concise way. Ease of understanding is difficult to quantify, so various proxies for it have been proposed, including the number of crossings and the total amount of ink required by the drawing [1,18]. Thus given two different ways to present information, we should choose the more succinct and crossing-free presentation. Confluent drawing [7,8,9,15,16] is a style of graph drawing in which multiple edges are combined into shared tracks, and two vertices are considered to be adjacent if a smooth path connects them in these tracks (Figure 1). This style was introduced to re- duce crossings, and in many cases it will also Fig. 1. Conventional and confluent improve the ink requirement by represent- drawings of K5,5 ing dense subgraphs concisely. -
Arxiv:2012.08669V1 [Math.CT] 15 Dec 2020 2 Preface
Sheaf Theory Through Examples (Abridged Version) Daniel Rosiak December 12, 2020 arXiv:2012.08669v1 [math.CT] 15 Dec 2020 2 Preface After circulating an earlier version of this work among colleagues back in 2018, with the initial aim of providing a gentle and example-heavy introduction to sheaves aimed at a less specialized audience than is typical, I was encouraged by the feedback of readers, many of whom found the manuscript (or portions thereof) helpful; this encouragement led me to continue to make various additions and modifications over the years. The project is now under contract with the MIT Press, which would publish it as an open access book in 2021 or early 2022. In the meantime, a number of readers have encouraged me to make available at least a portion of the book through arXiv. The present version represents a little more than two-thirds of what the professionally edited and published book would contain: the fifth chapter and a concluding chapter are missing from this version. The fifth chapter is dedicated to toposes, a number of more involved applications of sheaves (including to the \n- queens problem" in chess, Schreier graphs for self-similar groups, cellular automata, and more), and discussion of constructions and examples from cohesive toposes. Feedback or comments on the present work can be directed to the author's personal email, and would of course be appreciated. 3 4 Contents Introduction 7 0.1 An Invitation . .7 0.2 A First Pass at the Idea of a Sheaf . 11 0.3 Outline of Contents . 20 1 Categorical Fundamentals for Sheaves 23 1.1 Categorical Preliminaries . -
RGB Image-Based Data Analysis Via Discrete Morse Theory and Persistent Homology
RGB IMAGE-BASED DATA ANALYSIS 1 RGB image-based data analysis via discrete Morse theory and persistent homology Chuan Du*, Christopher Szul,* Adarsh Manawa, Nima Rasekh, Rosemary Guzman, and Ruth Davidson** Abstract—Understanding and comparing images for the pur- uses a combination of DMT for the partitioning and skeletoniz- poses of data analysis is currently a very computationally ing (in other words finding the underlying topological features demanding task. A group at Australian National University of) images using differences in grayscale values as the distance (ANU) recently developed open-source code that can detect function for DMT and PH calculations. fundamental topological features of a grayscale image in a The data analysis methods we have developed for analyzing computationally feasible manner. This is made possible by the spatial properties of the images could lead to image-based fact that computers store grayscale images as cubical cellular complexes. These complexes can be studied using the techniques predictive data analysis that bypass the computational require- of discrete Morse theory. We expand the functionality of the ments of machine learning, as well as lead to novel targets ANU code by introducing methods and software for analyzing for which key statistical properties of images should be under images encoded in red, green, and blue (RGB), because this study to boost traditional methods of predictive data analysis. image encoding is very popular for publicly available data. Our The methods in [10], [11] and the code released with them methods allow the extraction of key topological information from were developed to handle grayscale images. But publicly avail- RGB images via informative persistence diagrams by introducing able image-based data is usually presented in heat-map data novel methods for transforming RGB-to-grayscale.