Molecular Phylogenetic Studies of the Genus Brugia Hong Xie Yale Medical School
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Smith ScholarWorks Biological Sciences: Faculty Publications Biological Sciences 1994 Molecular Phylogenetic Studies of the Genus Brugia Hong Xie Yale Medical School O. Bain Biologie Parasitaire, Protistologie, Helminthologie, Museum d’Histoire Naturelle Steven A. Williams Smith College, [email protected] Follow this and additional works at: https://scholarworks.smith.edu/bio_facpubs Part of the Biology Commons Recommended Citation Xie, Hong; Bain, O.; and Williams, Steven A., "Molecular Phylogenetic Studies of the Genus Brugia" (1994). Biological Sciences: Faculty Publications, Smith College, Northampton, MA. https://scholarworks.smith.edu/bio_facpubs/37 This Article has been accepted for inclusion in Biological Sciences: Faculty Publications by an authorized administrator of Smith ScholarWorks. For more information, please contact [email protected] Article available at http://www.parasite-journal.org or http://dx.doi.org/10.1051/parasite/1994013255 MOLECULAR PHYLOGENETIC STUDIES ON BRUGIA FILARIAE USING HHA I REPEAT SEQUENCES XIE H.*, BAIN 0.** and WILLIAMS S. A.*,*** Summary : Résumé : ETUDES PHYLOGÉNÉTIQUES MOLÉCULAIRES DES FILAIRES DU GENRE BRUGIA À L'AIDE DE: LA SÉQUENCE RÉPÉTÉE HHA I This paper is the first molecular phylogenetic study on Brugia para• sites (family Onchocercidae) which includes 6 of the 10 species Cet article est la première étude plylogénétique moléculaire sur les of this genus : B. beaveri Ash et Little, 1964; B. buckleyi filaires du genre Brugia (Onchocercidae); elle inclut six des 10 Dissanaike et Paramananthan, 1961 ; B. malayi (Brug,1927) espèces du genre : B. beaveri Ash et Little, 1964; B. buckleyi Buckley, 1960 ; B. pohangi, (Buckley et Edeson, 1956) Buckley, Dissanaike et Paramananthan, 1961; B. malayi (Brug, 1927) 1960; B. patei (Buckley, Nelson et Heisch,1958) Buckley, 1960 Buckley, 1960; B. pahangi (Buckley et Edeson, 1956) Buckley, and B. limori Partono et al., 1977. Hha I repeat sequences are I960; B. patei (Buckley, Nelson et Heisch, 1958) Buckley, I960 322 nucleotides long, highly repeated, tandemly arranged and et B. timori Partono et al., 1977. Les répétitions HHA / sont longues unique to the nuclear genomes of the genus Brugia. Hha I repeat de 322 nucléotides, hautement répétées, arrangées en copies sequence data was collected by PCR, cloning and dideoxy directes et propres aux génomes nucléaires des espèces du genre sequencing. The Hha I repeat sequences were aligned and analy• Brugia. Les répétitions HHA / ont été amplifiées par PCR, clonées et zed by maximum parsimony algorithms, distance methods and séquencées. Les séquences obtenues ont été alignées puis leur phy- maximum likelihood methods to construct phylogenetic trees. logénie reconstruite par les méthodes de parcimonie, de distance et Bootstrap analysis was used to test the robustness of the different de vraisemblance. Des analyses de bootstrap ont été utilisées pour phylogenetic reconstructions. The data indicated that the Hha I tester la robustesse des différentes reconstructions phylogénétiques. repeat sequences are highly conserved within species yet differ Les données indiquent que les séquences de la répétition HHA / sont significantly between species. The various tree-building methods fortement conservées dans une même espèce alors qu'elles diffèrent gave identical results. Bootstrap analyses on the Hha I repeat significativement d'une espèce à l'autre. Les différents arbres sequence data set identified at least two clades : the B. pahangi- construits par les trois méthodes ont donné des résultats identiques. B. beaveri clade and the B. malayi-B.timori-B. buckleyi clade; the Les analyses de bootstrap de l'ensemble des séquences de la répéti• first clade includes parasites of carnivores from Asia and America; tion HHA / ont révélé au moins deux clades: le clade B. pahangi-B. the second includes species from primates and lagomorphs from beaveri, et le clade B. malayi-B.timori-B. buckleyi ; te premier clade Asiatic region. It was also noted that the Hha I repeat sequences groupe deux espèces parasites de carnivores, d'Asie et d'Amérique; obtained from B. malayi were identical to those obtained from B. le deuxième des espèces de primates et de lagomorphes de région timori, indicating very recent speciation. asiatique. Il est à noter que la séquence de la répétition HHA / de B. malayi est identique à celle obtenue pour B . timori, ce qui sug• gère une spéciation très récente. KEY WORDS : evolution, phylogenelics. PCR. molecular cloning. Hha I MOTS CLES : évolution, phylogenèse. PCR. clonage moléculaire, répé• repeats. Brugia malayi B. pahangi. B. beaveri. B. timori. B. patei. B. buck• titions HHA /. Brugia malayi. B. pahangi. B. beaveri. B. timori. B. leyi. patei. B. buckleyi. (Buckley, Nelson and Heisch, 1958) Buckley, 1960 here are ten species in the genus Brugia, six and B. timori Partono et al., 1977. The morphology of which were available for study in this and biology of the Brugia species are relatively well paper : B. beaveri Ash and Little, 1964; B. T known, but the phylogenetic relationships among buckleyi Dissanaike and Paramananthan. 1961: B. them are yet to be understood. It is important to malayi (Brug, 1927) Buckley, 1960; B. pahangi understand the evolutionary relationships of the (Buckley and Edeson, 1956) Buckley, 1960; B. patei various filarial parasites, since this knowledge can help parasitologists in the design of model systems * Program in Molecular and Cellular Biology, University of Massachusetts at Amherst. Amherst. MA 01003, USA. for species that are difficult to maintain in the labora ** Biologic Parasitaire, Protistologie, Helminthologie, CNRS-URA tory. Furthermore, this study may provide data for 114, Museum d'Histoire Naturelle, 61 rue Buffon. 75231 Paris morphologists (who base their classification systems Cedex 05, France entirely on parasite morphology) with a new means *** Department of Biological Sciences, Smith College, Northampton, to reference their own conclusions. It is very difficult MA 01063. LISA. Corresponding author : Dr. Hong Xie's current address : even for morphologists to identify the different spe Vale University School of Medicine. 100 York Street. #4A, New cies of Brugia at the infective stage (L3 larvae). To Haven. CT 06511, USA. resolve fine taxonomical distinctions at the DNA Fax : 203-732-2812; Phone : 203-785-4664. Parasite. 1994, 1, 255-260 255 XIE H., BAIN O. and WILLIAMS SA. level, highly repetitive DNA elements and other less for 10 minutes to release DNA. These preparations conserved sequences can be very useful (Williams et were used as the PCR templates. The same method al., 1988). Because most highly repeated DNA was used to prepare PCR template from B. timori sequences do not appear to code for any protein or microfilariae. RNA product, these sequences are able to evolve at a much faster rate than the coding region sequences of Amplification of Hha I repeat DNA sequences from genes. McReynolds et al. (1986) did digests of puri filarial parasite DNA fied B. malayi genomic DNA with a variety of restric tion endonucleases. Repeated DNA sequences of 322 Two PCR primers matching the consensus sequences bp were observed when the DNA was digested with of the conserved regions of the Hha I repeat were either Hha I, Alu I or Rsa I. The 322 bp repeat synthesized by the phosphoramidite method using sequence was designated the "Hha I repeat". By sub the Applied Biosystem 391A DNA synthesizer (Foster sequent dot hybridization and DNA renaturation kine City, CA, U.S.A.). The sequences of the two primers tics experiments, it was determined that the Hha I were : repeats comprise about 12% of the DNA of B. malayi Primer 1: 5'-GCGCATAAATTCATCAGC-3'; with a copy number of about 30,000 per haploid Primer 2: 5'-GCAAAACTTAATTACAAAAGC-3'. genome. This repeat is absent in other genera, inclu ding the very closely related genus Wuchereria All PCR reagents except primers, templates and (Williams et al., 1988). Since the ribosomal DNA spa double distilled water (ddH20) were from the cer region sequences were unable to resolve the phy- GeneAmp PCR kit purchased from Perkin-Elmer Cetus logenetic relationships among the Brugia species in a (Norwalk, CT, U.S.A.). The PCR reaction contents previous study (Xie et al., 1994), Hha I repeat included : 5 µl of 10x reaction buffer, 8 µl of 1.25mM sequences were used to investigate the phylogenetic dNTP mixture, 20 pmoles of each primer, 1-2 µl tem relationships among the six species in the genus plate DNA solution, 1 unit of Taq polymerase and Brugia. ddH20 added to a total volume of 50 µl. The PCR cycling programs used were: 93°C, 1 minute; 55°C, 1 minute; 72°C, 1 minute for a total of 30 cycles (Model MATERIALS AND METHODS 480 thermal cycler, Perkin-Elmer Cetus, Norwalk, CT, U.S.A.); and 93°C, 0.5 minute; 55°C, 0.5 minute; 72°C, PARASITE MATERIALS 0.5 minute for a total of 30 cycles (System 9600 ther mal cycler, Perkin-Elmer Cetus, Norwalk, CT, U.S.A.). dult B. pahangi and B. malayi were obtai ned from Dr. J. McCall (TRS Laboratory, Cloning and sequencing of the PCR amplified Hha I Athens, GA, U.S.A.). Adult B. malayi worms A repeat sequences and sequence data analysis preserved in 70% ethanol were provided by Dr. O. Bain (Paris, France). B. patei adults were kindly pro The details of the procedures were described in our vided by Drs. U.R. Rao and A.C. Vickery (University previous paper (Xie et al., 1994). Please refer to it for of Southern Florida, Gainesville, U.S.A.). B. beaveri more information. adults preserved in 100mM EDTA were kindly provi ded by Dr. T.C. Orihel (Tulane University Medical Center, New Orleans, U.S.A.). B. buckleyi adults pre RESULTS served in 70% ethanol were kindly provided by Dr. A.S. Dissanaike (Colombo, Sri Lanka). B. timori DNA SEQUENCE COLLECTION AND ALIGNMENT microfilariae preserved in 100mM EDTA were kindly provided by Dr. F. Partono (University of Indonesia, he head-to-tail tandem organization of Hha I Jakarta, Indonesia).