Isolation and Evaluation of the Antagonist Activity of Lactic Acid
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The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio In
microorganisms Review The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio in the Treatment of Obesity and Inflammatory Bowel disease Spase Stojanov 1,2, Aleš Berlec 1,2 and Borut Štrukelj 1,2,* 1 Faculty of Pharmacy, University of Ljubljana, SI-1000 Ljubljana, Slovenia; [email protected] (S.S.); [email protected] (A.B.) 2 Department of Biotechnology, Jožef Stefan Institute, SI-1000 Ljubljana, Slovenia * Correspondence: borut.strukelj@ffa.uni-lj.si Received: 16 September 2020; Accepted: 31 October 2020; Published: 1 November 2020 Abstract: The two most important bacterial phyla in the gastrointestinal tract, Firmicutes and Bacteroidetes, have gained much attention in recent years. The Firmicutes/Bacteroidetes (F/B) ratio is widely accepted to have an important influence in maintaining normal intestinal homeostasis. Increased or decreased F/B ratio is regarded as dysbiosis, whereby the former is usually observed with obesity, and the latter with inflammatory bowel disease (IBD). Probiotics as live microorganisms can confer health benefits to the host when administered in adequate amounts. There is considerable evidence of their nutritional and immunosuppressive properties including reports that elucidate the association of probiotics with the F/B ratio, obesity, and IBD. Orally administered probiotics can contribute to the restoration of dysbiotic microbiota and to the prevention of obesity or IBD. However, as the effects of different probiotics on the F/B ratio differ, selecting the appropriate species or mixture is crucial. The most commonly tested probiotics for modifying the F/B ratio and treating obesity and IBD are from the genus Lactobacillus. In this paper, we review the effects of probiotics on the F/B ratio that lead to weight loss or immunosuppression. -
Identification of Strains Isolated in Thailand and Assigned to the Genera Kozakia and Swaminathania
JOURNAL OF CULTURE COLLECTIONS Volume 6, 2008-2009, pp. 61-68 IDENTIFICATION OF STRAINS ISOLATED IN THAILAND AND ASSIGNED TO THE GENERA KOZAKIA AND SWAMINATHANIA Jintana Kommanee1, Somboon Tanasupawat1,*, Ancharida Akaracharanya2, Taweesak Malimas3, Pattaraporn Yukphan3, Yuki Muramatsu4, Yasuyoshi Nakagawa4 and Yuzo Yamada3,† 1Department of Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand; 2Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; 3BIOTEC Culture Collection, National Center for Genetic Engineering and Biotechnology, Pathumthani 12120, Thailand; 4Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation, Kisarazu 292-0818, Japan; †JICA Senior Overseas Volunteer, Japan International Cooperation Agency, Shibuya-ku, Tokyo 151-8558, Japan; Professor Emeritus, Shizuoka University, Suruga-ku, Shizuoka 422-8529, Japan *Corresponding author, e-mail: [email protected] Summary Four isolates, isolated from fruit of sapodilla collected at Chantaburi and designated as CT8-1 and CT8-2, and isolated from seeds of ixora („khem” in Thai, Ixora species) collected at Rayong and designated as SI15-1 and SI15-2, were examined taxonomically. The four isolates were selected from a total of 181 isolated acetic acid bacteria. Isolates CT8-1 and CT8-2 were non motile and produced a levan-like mucous polysaccharide from sucrose or D-fructose, but did not produce a water-soluble brown pigment from D-glucose on CaCO3-containing agar slants. The isolates produced acetic acid from ethanol and oxidized acetate and lactate to carbon dioxide and water, but the intensity of the acetate and lactate oxidation was weak. Their growth was not inhibited by 0.35 % acetic acid (v/v) at pH 3.5. -
Microbiology Media - Ready to Use, Prepared Plates
Microbiology Media - Ready to use, prepared plates Ready poured plates, general purpose media Ready poured plate, general anaerobe agar 65 65 Columbia blood agar with neomycin. Chromogenic UTI medium Catalogue No Plate diameter, mm Pack qty Price Catalogue No Pack qty Price PO794A 90 10 12.55 PO219A 10 7.54 CLED medium Catalogue No Plate diameter, mm Pack qty Price Ready poured plate, Lactobacilli PO120A 90 10 5.75 64 CLED square plate Catalogue No Plate dimensions, mm Pack qty Price MRS Agar. OXPO0299L 120 x 120 10 16.92 CLED medium with andrades Catalogue No Plate diameter, mm Pack qty Price Catalogue No Plate diameter, mm Pack qty Price PO231A 90 10 7.30 PO121A 90 10 5.75 Columbia agar base Ready poured plates, Legionnella media Catalogue No Plate diameter, mm Pack qty Price 65 OXPO0537A 90 10 5.45 MacConkey agar with salt Legionella growth medium, BCYE Catalogue No Plate diameter, mm Pack qty Price Catalogue No Plate diameter, mm Pack qty Price PO149A 90 10 5.95 PO5072A 90 10 14.72 MacConkey agar without salt Legionella selective medium, BMPA Catalogue No Plate diameter, mm Pack qty Price Catalogue No Plate diameter, mm Pack qty Price PO148A 90 10 5.58 PO0324A 90 10 20.31 MacConkey agar No. 3 Catalogue No Plate diameter, mm Pack qty Price PO495A 90 10 5.90 Malt extract agar Catalogue No Plate diameter, mm Pack qty Price PO182A 90 10 6.38 MRSA agar Catalogue No Plate diameter, mm Pack qty Price OXPO1162A 90 10 15.49 Nutrient agar Catalogue No Plate diameter, mm Pack qty Price PO155A 90 10 5.75 Plate count agar Catalogue No Plate diameter, mm Pack qty Price PO158A 90 10 6.36 R2A agar Catalogue No Plate diameter, mm Pack qty Price PO659A 90 10 6.50 Sabouraud dextrose agar Catalogue No Plate diameter, mm Pack qty Price OXPO0160A 90 10 5.54 Sorbitol MacConkey agar Catalogue No Plate diameter, mm Pack qty Price PO232A 90 10 5.84 Tryptone soya agar Catalogue No Plate diameter, mm Pack qty Price PO163A 90 10 5.49 OXPO0193-C 55 10 10.91 Yeast extract agar Catalogue No Plate diameter, mm Pack qty Price PO441A 90 10 5.08 55. -
Microbiological and Metagenomic Characterization of a Retail Delicatessen Galotyri-Like Fresh Acid-Curd Cheese Product
fermentation Article Microbiological and Metagenomic Characterization of a Retail Delicatessen Galotyri-Like Fresh Acid-Curd Cheese Product John Samelis 1,* , Agapi I. Doulgeraki 2,* , Vasiliki Bikouli 2, Dimitrios Pappas 3 and Athanasia Kakouri 1 1 Dairy Research Department, Hellenic Agricultural Organization ‘DIMITRA’, Katsikas, 45221 Ioannina, Greece; [email protected] 2 Hellenic Agricultural Organization ‘DIMITRA’, Institute of Technology of Agricultural Products, 14123 Lycovrissi, Greece; [email protected] 3 Skarfi EPE—Pappas Bros Traditional Dairy, 48200 Filippiada, Greece; [email protected] * Correspondence: [email protected] (J.S.); [email protected] (A.I.D.); Tel.: +30-2651094789 (J.S.); +30-2102845940 (A.I.D.) Abstract: This study evaluated the microbial quality, safety, and ecology of a retail delicatessen Galotyri-like fresh acid-curd cheese traditionally produced by mixing fresh natural Greek yogurt with ‘Myzithrenio’, a naturally fermented and ripened whey cheese variety. Five retail cheese batches (mean pH 4.1) were analyzed for total and selective microbial counts, and 150 presumptive isolates of lactic acid bacteria (LAB) were characterized biochemically. Additionally, the most and the least diversified batches were subjected to a culture-independent 16S rRNA gene sequencing analysis. LAB prevailed in all cheeses followed by yeasts. Enterobacteria, pseudomonads, and staphylococci were present as <100 viable cells/g of cheese. The yogurt starters Streptococcus thermophilus and Lactobacillus delbrueckii were the most abundant LAB isolates, followed by nonstarter strains of Lactiplantibacillus, Lacticaseibacillus, Enterococcus faecium, E. faecalis, and Leuconostoc mesenteroides, Citation: Samelis, J.; Doulgeraki, A.I.; whose isolation frequency was batch-dependent. Lactococcus lactis isolates were sporadic, except Bikouli, V.; Pappas, D.; Kakouri, A. Microbiological and Metagenomic for one cheese batch. -
Food Microbiology
Food Microbiology Food Water Dairy Beverage Online Ordering Available Food, Water, Dairy, & Beverage Microbiology Table of Contents 1 Environmental Monitoring Contact Plates 3 Petri Plates 3 Culture Media for Air Sampling 4 Environmental Sampling Boot Swabs 6 Environmental Testing Swabs 8 Surface Sanitizers 8 Hand Sanitation 9 Sample Preparation - Dilution Vials 10 Compact Dry™ 12 HardyCHROM™ Chromogenic Culture Media 15 Prepared Media 24 Agar Plates for Membrane Filtration 26 CRITERION™ Dehydrated Culture Media 28 Pathogen Detection Environmental With Monitoring Contact Plates Baird Parker Agar Friction Lid For the selective isolation and enumeration of coagulase-positive staphylococci (Staphylococcus aureus) on environmental surfaces. HardyCHROM™ ECC 15x60mm contact plate, A chromogenic medium for the detection, 10/pk ................................................................................ 89407-364 differentiation, and enumeration of Escherichia coli and other coliforms from environmental surfaces (E. coli D/E Neutralizing Agar turns blue, coliforms turn red). For the enumeration of environmental organisms. 15x60mm plate contact plate, The media is able to neutralize most antiseptics 10/pk ................................................................................ 89407-354 and disinfectants that may inhibit the growth of environmental organisms. Malt Extract 15x60mm contact plate, Malt Extract is recommended for the cultivation and 10/pk ................................................................................89407-482 -
Bacillus Subtilis Enhances Production of Paracin1.7, a Bacteriocin Produced by Lactobacillus Paracasei HD1-7, Isolated from Chinese Fermented Cabbage
Ann Microbiol (2014) 64:1735–1743 DOI 10.1007/s13213-014-0817-z ORIGINAL ARTICLE Bacillus subtilis enhances production of Paracin1.7, a bacteriocin produced by Lactobacillus paracasei HD1-7, isolated from Chinese fermented cabbage Jingping Ge & Baozhu Fang & Yang Wang & Gang Song & Wenxiang Ping Received: 11 September 2013 /Accepted: 14 January 2014 /Published online: 20 February 2014 # Springer-Verlag Berlin Heidelberg and the University of Milan 2014 Abstract Lactobacillus paracasei HD1-7 (CCTCCM Keywords Lactobacillus paracasei . Bacteriocin . 205015), isolated from Chinese sauerkraut fermentation broth, Co-culture experiments . Quorum sensing was found to contain the bacteriocin Paracin1.7, which pos- sesses broad-spectrum antibacterial activity. We examined the relationship between bacteriocin production by L. paracasei Introduction strain HD1-7 and the cell density of co-cultured bacteria. The cells and supernatants from cultures of different densities of Many bacteria are capable of producing bacteriocins, which five microbes, four bacteria, and a yeast were co-cultured with are ribosomally-synthesized peptides or proteins that have L. paracasei HD1-7, and the change in Paracin1.7 levels in the antimicrobial activity against closely related bacterial strains culture broth was measured by the agar-well diffusion meth- or broad-spectrum inhibitory activity against other microbes od. When the initial cell density of the L. paracasei HD1-7 (Tagg et al. 1976;Boman1995; Hancock and Lehrer 1998). inoculum was 106 CFU/mL, the strain did not produce bacte- The use of lactic acid bacteria (LAB) in fermented foods has a riocin, and this was termed the threshold concentration. The long history due to the benefits of their nutritional, organolep- five species of microbes tested were grown with added culture tic, and antimicrobial activities (Klaenhammer 1993). -
Probiotic Lactobacillus Paracasei Expressing a Nucleic Acid
Article Probiotic Lactobacillus Paracasei Expressing a Nucleic Acid-Hydrolyzing Minibody (3D8 Scfv) Enhances Probiotic Activities in Mice Intestine as Revealed by Metagenomic Analyses Seungchan Cho 1,†, Dongjun Kim 1, Yongjun Lee 1, Eui-Joon Kil 1, Mun-Ju Cho 1, Sung-June Byun 2, Won Kyong Cho 3,* and Sukchan Lee 1,* 1 Department of Genetic Engineering, Sungkyunkwan University, 2066, Seobu-ro, Jangan-gu, Suwon 16419, Korea; [email protected] (S.C.); [email protected] (D.K.); [email protected] (Y.L.); [email protected] (E.-J.K.); [email protected] (M.-J.C.) 2 Animal Biotechnology Division, National Institute of Animal Science (NIAS), Rural Development Administration (RDA), 1500, Kongjwipatjwi-ro, Iseomyeon, Wanju 55365, Korea; [email protected] 3 Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, 1, Gwanak-ro, Gwanak-gu, Seoul 08826, Korea * Correspondence: [email protected] (W.K.C.); [email protected] (S.L.) † Present address: Department of Microbiology, College of Medicine, Korea University, 73, Inchon-ro, Seoul 08826, Korea. Received: 8 March 2018; Accepted: 17 May 2018; Published: 29 May 2018 Abstract: Probiotics are well known for their beneficial effects for animals, including humans and livestock. Here, we tested the probiotic activity of Lactobacillus paracasei expressing 3D8 scFv, a nucleic acid-hydrolyzing mini-antibody, in mice intestine. A total of 18 fecal samples derived from three different conditions at two different time points were subjected to high-throughput 16S ribosomal RNA (rRNA) metagenomic analyses. Bioinformatic analyses identified an average of 290 operational taxonomic units. After administration of L. -
Isolation, Identification and Investigation Of
foods Article Isolation, Identification and Investigation of Fermentative Bacteria from Sea Bass (Dicentrarchus labrax): Evaluation of Antifungal Activity of Fermented Fish Meat and By-Products Broths Francisco J. Martí-Quijal 1 , Andrea Príncep 1, Adrián Tornos 1 , Carlos Luz 1, Giuseppe Meca 1, Paola Tedeschi 2, María-José Ruiz 1, Francisco J. Barba 1,* and Jordi Mañes 1 1 Nutrition, Food Science and Toxicology Department, Faculty of Pharmacy, Universitat de València, Avda. Vicent Andrés Estellés, s/n, 46100 Burjassot, València, Spain; [email protected] (F.J.M.-Q.); [email protected] (A.P.); [email protected] (A.T.); [email protected] (C.L.); [email protected] (G.M.); [email protected] (M.-J.R.); [email protected] (J.M.) 2 Department of Chemical and Pharmaceutical Sciences, University of Ferrara, Via Fossato di Mortara 17, 44121 Ferrara, Italy; [email protected] * Correspondence: [email protected] Received: 2 April 2020; Accepted: 17 April 2020; Published: 4 May 2020 Abstract: During fish production processes, great amounts of by-products are generated, representing 30–70% of the initial weight. Thus, this research study is investigating 30 lactic acid bacteria ≈ (LAB) derived from the sea bass gastrointestinal tract, for anti-fungal activity. It has been previously suggested that LAB showing high proteolitic activity are the most suitable candidates for such an investigation. The isolation was made using a MRS (Man Rogosa Sharpe) broth cultivation medium at 37 ºC under anaerobiosis conditions, while the evaluation of the enzymatic activity was made using the API® ZYM kit. -
Presence of Two Lactobacillus and Bifidobacterium Probiotic Strains in the Neonatal Ileum
The ISME Journal (2008) 2, 83–91 & 2008 International Society for Microbial Ecology All rights reserved 1751-7362/08 $30.00 www.nature.com/ismej ORIGINAL ARTICLE Presence of two Lactobacillus and Bifidobacterium probiotic strains in the neonatal ileum Rebecca Wall1,2,3, Seamus Gerard Hussey4,5, C Anthony Ryan4, Martin O’Neill5, Gerald Fitzgerald2,3,1,2, Catherine Stanton1,2 and R Paul Ross1,2 1Department of Biotechnology, Teagasc, Moorepark Food Research Centre, Fermoy, Co. Cork, Ireland; 2Alimentary Pharmabiotic Centre, Cork, Ireland; 3Department of Microbiology, University College, Cork, Ireland; 4Erinville Hospital and Department of Paediatrics and Child Health, University College, Cork, Ireland and 5Department of Paediatrics, Mayo General Hospital, Castlebar, Mayo, Ireland The overall purpose of this study was to examine the lactobacilli and bifidobacteria microbiota in the human ileum at a very early stage of life. Ileostomy effluents from two infants, taken at different time points, were plated on Lactobacillus selective agar and cys-MRS containing mupirocin to select for bifidobacteria. In one case, a stool sample following ileostomy reversal was subsequently analyzed microbiologically. Pulse-field gel electrophoresis and 16S rRNA sequencing was used to investigate the cultivable population of bifidobacteria and lactobacilli and denaturing gradient gel electrophor- esis (DGGE) to examine the non-cultivable population. The probiotic strain, Lactobacillus paracasei NFBC 338, was recovered at both time points from one of the infants and dominated in the small intestine for a period of over 3 weeks. Moreover, the probiotic strain, B. animalis subsp. lactis Bb12, was obtained from the other infant. This study shows the presence of two known probiotic strains in the upper intestinal tract at an early stage of human life and thus provides some evidence for their ability to colonize the infant small intestine. -
Characterization of Cucumber Fermentation Spoilage Bacteria by Enrichment Culture and 16S Rdna Cloning
Characterization of Cucumber Fermentation Spoilage Bacteria by Enrichment Culture and 16S rDNA Cloning Fred Breidt, Eduardo Medina, Doria Wafa, Ilenys P´erez-D´ıaz, Wendy Franco, Hsin-Yu Huang, Suzanne D. Johanningsmeier, and Jae Ho Kim Abstract: Commercial cucumber fermentations are typically carried out in 40000 L fermentation tanks. A secondary fermentation can occur after sugars are consumed that results in the formation of acetic, propionic, and butyric acids, concomitantly with the loss of lactic acid and an increase in pH. Spoilage fermentations can result in significant economic loss for industrial producers. The microbiota that result in spoilage remain incompletely defined. Previous studies have implicated yeasts, lactic acid bacteria, enterobacteriaceae, and Clostridia as having a role in spoilage fermentations. We report that Propionibacterium and Pectinatus isolates from cucumber fermentation spoilage converted lactic acid to propionic acid, increasing pH. The analysis of 16S rDNA cloning libraries confirmed and expanded the knowledge gained from previous studies using classical microbiological methods. Our data show that Gram-negative anaerobic bacteria supersede Gram-positive Fermincutes species after the pH rises from around 3.2 to pH 5, and propionic and butyric acids are produced. Characterization of the spoilage microbiota is an important first step in efforts to prevent cucumber fermentation spoilage. Keywords: pickled vegetables, Pectinatus, Propionibacteria, secondary cucumber fermentation, spoilage M: Food Microbiology Practical Application: An understanding of the microorganisms that cause commercial cucumber fermentation spoilage & Safety may aid in developing methods to prevent the spoilage from occurring. Introduction cucumbers fermented at 2.3% NaCl (Fleming and others 1989). Commercial cucumber fermentations are typically carried out In this fermentation tank, the initial lactic acid fermentation was in large 40000 L outdoor tanks (reviewed by Breidt and others completed within 2 wk, with 1.2% lactic acid formed (pH 3.6) 2007). -
The Effectiveness of Probiotic Lactobacillus Rhamnosus
nutrients Article The Effectiveness of Probiotic Lactobacillus rhamnosus and Lactobacillus casei Strains in Children with Atopic Dermatitis and Cow’s Milk Protein Allergy: A Multicenter, Randomized, Double Blind, Placebo Controlled Study Bozena˙ Cukrowska 1,*, Aldona Ceregra 2, Elzbieta˙ Maciorkowska 3, Barbara Surowska 4, Maria Agnieszka Zegadło-Mylik 5, Ewa Konopka 1, Ilona Trojanowska 1, Magdalena Zakrzewska 3, Joanna Beata Bierła 1 , Mateusz Zakrzewski 3, Ewelina Kanarek 1 and Ilona Motyl 6 1 Department of Pathomorphology, the Children’s Memorial Health Institute, Aleja Dzieci Polskich 20, 04-730 Warsaw, Poland; [email protected] (E.K.); [email protected] (I.T.); [email protected] (J.B.B.); [email protected] (E.K.) 2 Outpatient Allergology and Dermatology Clinic, Patriotów St. 100, 04-844 Warsaw, Poland; [email protected] 3 Department of Developmental Age Medicine and Paediatric Nursing, Faculty of Health Sciences, Medical University of Bialystok, Szpitalna St. 37, 15-295 Białystok, Poland; [email protected] (E.M.); Citation: Cukrowska, B.; Ceregra, A.; [email protected] (M.Z.); [email protected] (M.Z.) 4 Outpatient Allergology Clinic, the Children’s Memorial Health Institute, Aleja Dzieci Polskich 20, Maciorkowska, E.; Surowska, B.; 04-730 Warsaw, Poland; [email protected] Zegadło-Mylik, M.A.; Konopka, E.; 5 Outpatient Dermatology Clinic, Chodakowska St. 8, 96-503 Sochaczew, Poland; [email protected] Trojanowska, I.; Zakrzewska, M.; 6 Department of Environmental Biotechnology, Lodz University of Technology, Wólcza´nska171/173, Bierła, J.B.; Zakrzewski, M.; et al. The 90-924 Łód´z,Poland; [email protected] Effectiveness of Probiotic Lactobacillus * Correspondence: [email protected]; Tel.: +48-22-815-19-69 rhamnosus and Lactobacillus casei Strains in Children with Atopic Abstract: Probiotics seem to have promising effects in the prevention and treatment of allergic Dermatitis and Cow’s Milk Protein conditions including atopic dermatitis (AD) and food allergy. -
Tryptic Soy Agar • Trypticase™ Soy Agar (Soybean-Casein Digest Agar)
Tryptic Soy Agar • Trypticase™ Soy Agar (Soybean-Casein Digest Agar) Intended Use plate counting, isolation of microorganisms from a variety Tryptic (Trypticase) Soy Agar (TSA) is used for the isolation and of specimen types and as a base for media containing blood.4-7 cultivation of nonfastidious and fastidious microorganisms. It It is also recommended for use in industrial applications when is not the medium of choice for anaerobes. testing water and wastewater,8 food,9-14 dairy products,15 and cosmetics.10,16 The 150 × 15 mm-style plates of Trypticase Soy Agar are convenient for use with Taxo™ factor strips in the isolation and Since TSA does not contain the X and V growth factors, it can differentiation of Haemophilus species. conveniently be used in determining the requirements for these growth factors by isolates of Haemophilus by the addition of X, Sterile Pack and Isolator Pack plates are useful for monitoring V and XV Factor Strips to inoculated TSA plates.5 The 150 mm surfaces and air in clean rooms, Isolator Systems and other plate provides a larger surface area for inoculation, making the environmentally-controlled areas when sterility of the medium “satellite” growth around the strips easier to read. is of importance. With the Sterile Pack and Isolator Pack plates, the entire double- Hycheck™ hygiene contact slides are used for assessing the wrapped (Sterile Pack) or triple-wrapped (Isolator Pack) product microbiological contamination of surfaces and fluids. is subjected to a sterilizing dose of gamma radiation, so that the Tryptic (Trypticase) Soy Agar meets United States Pharmacopeia contents inside the outer package(s) are sterile.17 This allows the (USP), European Pharmacopoeia (EP) and Japanese Pharmaco- inner package to be aseptically removed without introducing poeia (JP)1-3 performance specifications, where applicable.