Sound Production in Four Damselfish (Dascyllus) Species
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Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
The Role of Threespot Damselfish (Stegastes Planifrons)
THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Masters of Science Brooke A. Axline-Minotti August 2003 This thesis entitled THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF BY BROOKE A. AXLINE-MINOTTI has been approved for the Program of Environmental Studies and the College of Arts and Sciences by Molly R. Morris Associate Professor of Biological Sciences Leslie A. Flemming Dean, College of Arts and Sciences Axline-Minotti, Brooke A. M.S. August 2003. Environmental Studies The Role of Threespot Damselfish (Stegastes planifrons) as a Keystone Species in a Bahamian Patch Reef. (76 pp.) Director of Thesis: Molly R. Morris Abstract The purpose of this research is to identify the role of the threespot damselfish (Stegastes planifrons) as a keystone species. Measurements from four functional groups (algae, coral, fish, and a combined group of slow and sessile organisms) were made in various territories ranging from zero to three damselfish. Within territories containing damselfish, attack rates from the damselfish were also counted. Measures of both aggressive behavior and density of threespot damselfish were correlated with components of biodiversity in three of the four functional groups, suggesting that damselfish play an important role as a keystone species in this community. While damselfish density and measures of aggression were correlated, in some cases only density was correlated with a functional group, suggesting that damselfish influence their community through mechanisms other than behavior. -
Quantitative Species-Level Ecology of Reef Fish Larvae Via Metabarcoding
ARTICLES https://doi.org/10.1038/s41559-017-0413-2 Quantitative species-level ecology of reef fish larvae via metabarcoding Naama Kimmerling1,2, Omer Zuqert3, Gil Amitai3, Tamara Gurevich2, Rachel Armoza-Zvuloni2,8, Irina Kolesnikov2, Igal Berenshtein1,2, Sarah Melamed3, Shlomit Gilad4, Sima Benjamin4, Asaph Rivlin2, Moti Ohavia2, Claire B. Paris 5, Roi Holzman 2,6*, Moshe Kiflawi 2,7* and Rotem Sorek 3* The larval pool of coral reef fish has a crucial role in the dynamics of adult fish populations. However, large-scale species-level monitoring of species-rich larval pools has been technically impractical. Here, we use high-throughput metabarcoding to study larval ecology in the Gulf of Aqaba, a region that is inhabited by >500 reef fish species. We analysed 9,933 larvae from 383 samples that were stratified over sites, depth and time. Metagenomic DNA extracted from pooled larvae was matched to a mitochondrial cytochrome c oxidase subunit I barcode database compiled for 77% of known fish species within this region. This yielded species-level reconstruction of the larval community, allowing robust estimation of larval spatio-temporal distribu- tions. We found significant correlations between species abundance in the larval pool and in local adult assemblages, suggest- ing a major role for larval supply in determining local adult densities. We documented larval flux of species whose adults were never documented in the region, suggesting environmental filtering as the reason for the absence of these species. Larvae of several deep-sea fishes were found in shallow waters, supporting their dispersal over shallow bathymetries, potentially allow- ing Lessepsian migration into the Mediterranean Sea. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
Mediating Effects of Sea Urchins on Interactions Among Corals, Algae and Herbivorous Fish in the Moorea Lagoon, French Polynesia
MARINE ECOLOGY PROGRESS SERIES Vol. 332: 143–153, 2007 Published March 5 Mar Ecol Prog Ser Mediating effects of sea urchins on interactions among corals, algae and herbivorous fish in the Moorea lagoon, French Polynesia B. D. Mapstone1,*, N. L. Andrew2, Y. Chancerelle3, B. Salvat3, 4 1Antarctic Climate & Ecosystem CRC, University of Tasmania, Private Bag 80, Hobart, Tasmania 7001, Australia 2WorldFish Center, PO Box 500, GPO, 10670 Penang, Malaysia 3Centre de Recherches Insulaires et Observatoire de l’Environnement, EPHE, BP 1013, Moorea, French Polynesia 4Laboratoire de Biologie Marine, URA CNRS 8046, EPHE, Université de Perpignan, 66860 Perpignan Cedex, France ABSTRACT: The relative importance of grazing by sea urchins in influencing the composition and structure of coral reef habitats has only occasionally been explored experimentally, and never on the coral reefs of Oceania, where both herbivorous fishes and sea urchins are often common. In this paper we report the results of an experiment in French Polynesia, in which densities of an abundant sea urchin, Echinometra mathaei, were manipulated within the territories of an abundant omnivo- rous, ‘gardening’ pomacentrid fish (Stegastes lividus) in thickets of Acropora pulchra. Increasing the sea urchin density resulted in reductions in the standing crop of algae and over-grazing of the dead coral substratum on which the algae grew. After 2 yr of this treatment, the coral thickets began to col- lapse. Reducing sea urchin densities to very low levels also resulted in collapse of the coral thickets and reduced densities of the fish, although algal biomass was apparently unaffected. We posit that the fish–coral–sea urchin–algal assemblage is relatively robust to wide fluctuations in sea urchin densities, but when sea urchin densities are driven to extremes the coral–algal habitat becomes destabilised and the entire system collapses, possibly as a result of different bioerosion processes in play at high and low sea urchin densities. -
ABDOU A., KEITH P., GALZIN R., 2015- Freshwater Neritids (Mollusca : Gastropoda) of Tropical Island, Amphidromy As a Life Cycle, a Review
ABDOU A., KEITH P., GALZIN R., 2015- Freshwater neritids (mollusca : Gastropoda) of tropical island, amphidromy as a life cycle, a review. Revue d’Ecologie (Terre et Vie), 70 (4) : 387-397. ADJEROUD M., AUGUSTIN D., GALZIN R., SALVAT B., 2002- Natural disturbances and interannual variability of coral reef communities on the outer slope of Tiahura (Moorea, French Polynesia): 1991 to 1997. Mar. Ecol. Progr. Ser. 237 : 121-131 ADJEROUD M., CHANCERELLE Y., SCHRIMM M., PEREZ T., LECCHINI D., GALZIN R., SALVAT B., 2005 – Detecting the effects of natural disturbances on coral assemblages in French Polynesia : a decade survey at multiple scales. Aquatic Living resources, 18 : 111-123. ADJEROUD M., MICHONNEAU F., EDMUNDS P., CHANCERELLE Y., LISON DE LOMA T., PENIN L., THIBAUT L., VIDAL-DUPIOL J., SALVAT B., GALZIN R., 2009- Recurrent disturbances, recovery trajectories and resilience of coral assemblages on a south central pacific. Reef. Coral Reefs, 28 : 775-780. AMANIEU M., DO CHI T., GALZIN R., LASSERRE G., 1978 - Structure et importance des populations de crabe vert Carcinus mediterraneus Czerniavsky, 1884, dans l'étang du Prévost (Languedoc - France). Bull. Ecol., 9 (4): 329-341. ARIAS-GONZALEZ E., HERTEL O., GALZIN R., 1998 - Fonctionnement trophique d'un écosystème récifal en Polynésie française. Cybium, 22(2) : 1-24 ARIAS-GONZALEZ E., NUNEZ-LARA E., GONZALEZ-SALAS C., GALZIN R., 2004- Trophic models for investigation of fishing effect on coral reef ecosystems. Ecological Modeling. 172: 197-212 ARIAS-GONZALEZ E.,.GALZIN R., HARMELIN-VIVIEN M., 2004- Spatial, ontogenetic and temporal variation in the feeding habits of the squirrelfish Sargocentron microstoma on reefs in Moorea, French Polynesia. -
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group THE MARINE BIODIVERSITY AND FISHERIES CATCHES OF THE PITCAIRN ISLAND GROUP M.L.D. Palomares, D. Chaitanya, S. Harper, D. Zeller and D. Pauly A report prepared for the Global Ocean Legacy project of the Pew Environment Group by the Sea Around Us Project Fisheries Centre The University of British Columbia 2202 Main Mall Vancouver, BC, Canada, V6T 1Z4 TABLE OF CONTENTS FOREWORD ................................................................................................................................................. 2 Daniel Pauly RECONSTRUCTION OF TOTAL MARINE FISHERIES CATCHES FOR THE PITCAIRN ISLANDS (1950-2009) ...................................................................................... 3 Devraj Chaitanya, Sarah Harper and Dirk Zeller DOCUMENTING THE MARINE BIODIVERSITY OF THE PITCAIRN ISLANDS THROUGH FISHBASE AND SEALIFEBASE ..................................................................................... 10 Maria Lourdes D. Palomares, Patricia M. Sorongon, Marianne Pan, Jennifer C. Espedido, Lealde U. Pacres, Arlene Chon and Ace Amarga APPENDICES ............................................................................................................................................... 23 APPENDIX 1: FAO AND RECONSTRUCTED CATCH DATA ......................................................................................... 23 APPENDIX 2: TOTAL RECONSTRUCTED CATCH BY MAJOR TAXA ............................................................................ -
Gene ¯Ow at Three Spatial Scales in a Coral Reef ®Sh, the Three-Spot Dascyllus, Dascyllus Trimaculatus
Marine Biology &2001) 138: 457±465 Ó Springer-Verlag 2001 Giacomo Bernardi á Sally J. Holbrook á Russell J. Schmitt Gene ¯ow at three spatial scales in a coral reef ®sh, the three-spot dascyllus, Dascyllus trimaculatus Received: 26 May 2000 / Accepted: 10 October 2000 Abstract Dispersal in coral reef ®shes occurs predomi- Introduction nantly during the larval planktonic stage of their life cycle. With relatively brief larval stages, damsel®shes Most coral reef ®shes have a bipartite life history, with &Pomacentridae) are likely to exhibit limited dispersal. pelagic early life stages and reef-associated older stages. This study evaluates gene ¯ow at three spatial scales in Dispersal during the benthic adult stage is generally one species of coral reef damsel®sh, Dascyllus trimacul- limited. In contrast, the pelagic larval stage is thought to atus. Samples were collected at seven locations at provide an opportunity for dispersal over great distances Moorea, Society Islands, French Polynesia. Phylo- &Leis 1991). While the evolutionary and ecological sig- genetic relationships and gene ¯ow based on mito- ni®cance of dispersal is of pivotal importance &Warner chondrial control region DNA sequences between these 1997), estimating dispersal capabilities of coral reef locations were evaluated &®rst spatial scale). Although ®shes remains a formidable challenge. Techniques to spatial structure was not found, molecular markers investigate dispersal have included direct approaches, showed clear temporal structure, which may be because such as tag and recapture of individuals &Jones et al. pulses of settling larvae have distinct genetic composi- 1999), as well as indirect techniques such as the use of tion. -
Annotated Checklist of the Fish Species (Pisces) of La Réunion, Including a Red List of Threatened and Declining Species
Stuttgarter Beiträge zur Naturkunde A, Neue Serie 2: 1–168; Stuttgart, 30.IV.2009. 1 Annotated checklist of the fish species (Pisces) of La Réunion, including a Red List of threatened and declining species RONALD FR ICKE , THIE rr Y MULOCHAU , PA tr ICK DU R VILLE , PASCALE CHABANE T , Emm ANUEL TESSIE R & YVES LE T OU R NEU R Abstract An annotated checklist of the fish species of La Réunion (southwestern Indian Ocean) comprises a total of 984 species in 164 families (including 16 species which are not native). 65 species (plus 16 introduced) occur in fresh- water, with the Gobiidae as the largest freshwater fish family. 165 species (plus 16 introduced) live in transitional waters. In marine habitats, 965 species (plus two introduced) are found, with the Labridae, Serranidae and Gobiidae being the largest families; 56.7 % of these species live in shallow coral reefs, 33.7 % inside the fringing reef, 28.0 % in shallow rocky reefs, 16.8 % on sand bottoms, 14.0 % in deep reefs, 11.9 % on the reef flat, and 11.1 % in estuaries. 63 species are first records for Réunion. Zoogeographically, 65 % of the fish fauna have a widespread Indo-Pacific distribution, while only 2.6 % are Mascarene endemics, and 0.7 % Réunion endemics. The classification of the following species is changed in the present paper: Anguilla labiata (Peters, 1852) [pre- viously A. bengalensis labiata]; Microphis millepunctatus (Kaup, 1856) [previously M. brachyurus millepunctatus]; Epinephelus oceanicus (Lacepède, 1802) [previously E. fasciatus (non Forsskål in Niebuhr, 1775)]; Ostorhinchus fasciatus (White, 1790) [previously Apogon fasciatus]; Mulloidichthys auriflamma (Forsskål in Niebuhr, 1775) [previously Mulloidichthys vanicolensis (non Valenciennes in Cuvier & Valenciennes, 1831)]; Stegastes luteobrun- neus (Smith, 1960) [previously S. -
Regeneration of a Reef Flat Ten Years After the Impact of the Cyclone Firinga (Reunion, SW Indian Ocean)
Proceedings 9th International Coral Reef Symposium,Bali, Indonesia 23-27 October 2000 Regeneration of a reef flat ten years after the impact of the cyclone Firinga (Reunion, SW Indian ocean) O. Naim1, P. Chabanet1, T. Done2, C. Tourrand1 and Y. Letourneur1 ABSTRACT Changes in composition of corals, algae and fishes at St-Leu, La Reunion, appear to be successional in character, the presence and abundance of each group facilitating the presence and abundance of others by changing the local community structure and resource base. This was shown in a study following Cyclone Firinga in 1989. Before the cyclone, large colonies of Acropora muricata, dominated the coral zone, forming with Porites lobata, Pavona divaricata and large tables of Acropora cytherea, a coral community of 30-40% coverage with relatively low diversity. Immediately after the cyclone, only 2 coral species survived, but the growth rate of living coral later exceeded its previous maximum due to the low tendency for competition for space, reaching more than 6% per year. By 2000, the coral richness on St-Leu (51 species) was comparable to that recorded 20 years earlier. For fish, total species richness and the mean species number / census slightly increased between 1993 and 2000, but there were important differences among sites and times that were mainly due to change in individual numbers inside the territories of the damselfish Stegastes nigricans, which in turn were linked to the changing coral and algal cover. Variations in fish density were related to variation of benthic cover ,including corallivorous Chaetodontidae, that useful as bioindicators of coral reef health. -
Weeding by the Herbivorous Damselfish Stegastes Nigricans in Nearly Monocultural Algae Farms
MARINE ECOLOGY PROGRESS SERIES Vol. 237: 227–231, 2002 Published July 18 Mar Ecol Prog Ser Weeding by the herbivorous damselfish Stegastes nigricans in nearly monocultural algae farms Hiroki Hata*, Makoto Kato Graduate School of Human and Environmental Studies, Kyoto University, Sakyo, Kyoto 606-8501, Japan ABSTRACT: Resident herbivorous damselfishes (Pisces: Pomacentridae) exclude other herbivores from their territories and reduce the grazing pressure within these territories. Among the damselfish, Stegastes nigricans is unique in that it manages a virtual monoculture dominated by the erect fila- mentous rhodophyte Womersleyella setacea, whereas many other herbivorous damselfishes maintain species-rich farms. We observed the behavior of S. nigricans in a lagoon in Okinawa, Japan, and discovered that this species intensively weeded out specific algae. To analyze weeding selectivity, we compared the algae picked up and discarded by S. nigricans to the algal assemblage found inside the territory. To examine the digestibility of each algal species, 10 damselfish were collected, and algae removed from their stomachs were compared with those found in the intestine and faeces. Inside their territories, S. nigricans selectively weeded out indigestible algae. These algae were late- colonizing species, and the intensive weeding suppressed algal growth beyond early successional stages. Consequently, selective weeding enabled the fish to maintain virtual monocultural farms of a digestible early colonizer, W. setacea, inside their territories. KEY WORDS: Stegastes nigricans · Weeding · Algae farm · Virtual monoculture · Womersleyella setacea · Digestibility Resale or republication not permitted without written consent of the publisher INTRODUCTION Fish lack cellulases and other enzymes necessary for the digestion of plant cell walls (Horn 1992). -
Draft Acanthurus Achilles
Draft Acanthurus achilles - Shaw, 1803 ANIMALIA - CHORDATA - ACTINOPTERYGII - PERCIFORMES - ACANTHURIDAE - Acanthurus - achilles Common Names: Achilles Tang (English), Akilles' Kirurgfisk (Danish), Bir (Marshallese), Chirurgien à Tache Rouge (French), Chiurgien d'Achille (French), Cirujano (Spanish; Castilian), Cirujano Encendido (Spanish; Castilian), Indangan (Filipino; Pilipino), Kolala (Niuean), Kolama (Samoan), Meha (Tahitian), Navajón de Aguiles (Spanish; Castilian), Pāku'iku'i (Hawaiian), Red-spotted Surgeonfish (English), Redspot Surgeonfish (English), Redtail Surgeonfish (English) Synonyms: Acanthurus Shaw, 1803; Hepatus (Shaw, 1803); Teuthis (Shaw, 1803); Taxonomic Note: This species is a member of the Acanthurus achilles species complex known for their propensity to hybridize (Randall and Frische 2000). The four species in this complex (A. achilles Shaw, A. japonicus Schmidt, A. leucosternon Bennett, and A. nigricans Linnaeus) are thought to hybridize when their distributional ranges overlap (Craig 2008). Red List Status LC - Least Concern, (IUCN version 3.1) Red List Assessment Assessment Information Reviewed? Date of Review: Status: Reasons for Rejection: Improvements Needed: true 2011-02-11 Passed - - Assessor(s): Choat, J.H., Russell, B., Stockwell, B., Rocha, L.A., Myers, R., Clements, K.D., McIlwain, J., Abesamis, R. & Nanola, C. Reviewers: Davidson, L., Edgar, G. & Kulbicki, M. Contributor(s): (Not specified) Facilitators/Compilers: (Not specified) Assessment Rationale Acanthurus achilles is widespread and abundant throughout its range. It is found in isolated oceanic islands and is caught only incidentally for food in parts of its distribution. It is a major component of the aquarium trade and is a popular food fish in West Hawaii. There is evidence of declines from collection and concern for the sustained abundance of this species.