Jacques Monod and the Advent of the Age of Operons
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Francois Jacob Memorial
RETROSPECTIVE RETROSPECTIVE Francois Jacob memorial Arthur B. Pardee1 Department of Adult Oncology, Dana-Farber Institute, Boston, MA 02115 Dr. Francois Jacob is one of a handful of the DNA would integrate into the bacterial chro- 20th century’smostdistinguishedlifescien- mosome and remain dormant or, at other tists. His research with Dr. Jacques Monod, times, would kill the cell. like that of Watson and Crick, provided the Jacob’s next major contribution, in collab- foundations for understanding mechanisms oration with Dr. Jacques Monod, was to in- of genetic regulation of life processes such vestigate how a gene is regulated. Remark- as cell differentiation and defects in diseases. ably, native E. coli synthesize β-galactosidase Jacob joined the College de France in 1964 only when lactose is available. Some mutated and shared the Nobel Prize in Physiology bacteria can make the enzyme in the absence or Medicine 1965 with Jacques Monod of inducer. Monod’s initial idea was that and Andre Lwoff. He was elected to the these constitutive bacteria activate the gene National Academy of Sciences (NAS) USA by synthesizing an intracellular lactose-like in 1969. inducer molecule. Jacob was born in 1920 in a French Jewish To investigate this model, interrupted family; his grandfather was a four-star gen- mating was applied to bring the β-galactosi- eral. He began to study medicine before dase gene of a donor bacterium into a consti- World War II, in which he served as a mil- tutive receptor. According to the induction itary officer in the Free French Army and was model, the mated cell should produce en- badly wounded in an air raid. -
Quiet Debut'' of the Double Helix: a Bibliometric and Methodological
Journal of the History of Biology Ó Springer 2009 DOI 10.1007/s10739-009-9183-2 Revisiting the ‘‘Quiet Debut’’ of the Double Helix: A Bibliometric and Methodological note on the ‘‘Impact’’ of Scientific Publications YVES GINGRAS De´partement d’histoire Universite´ du Que´bec a` Montre´al C.P. 8888, Suc. Centre-Ville Montreal, QC H3C-3P8 Canada E-mail: [email protected] Abstract. The object of this paper is two-fold: first, to show that contrary to what seem to have become a widely accepted view among historians of biology, the famous 1953 first Nature paper of Watson and Crick on the structure of DNA was widely cited – as compared to the average paper of the time – on a continuous basis from the very year of its publication and over the period 1953–1970 and that the citations came from a wide array of scientific journals. A systematic analysis of the bibliometric data thus shows that Watson’s and Crick’s paper did in fact have immediate and long term impact if we define ‘‘impact’’ in terms of comparative citations with other papers of the time. In this precise sense it did not fall into ‘‘relative oblivion’’ in the scientific community. The second aim of this paper is to show, using the case of the reception of the Watson–Crick and Jacob–Monod papers as concrete examples, how large scale bibliometric data can be used in a sophisticated manner to provide information about the dynamic of the scientific field as a whole instead of limiting the analysis to a few major actors and generalizing the result to the whole community without further ado. -
MCDB 5220 Methods and Logics April 21 2015 Marcelo Bassalo
Cracking the Genetic Code MCDB 5220 Methods and Logics April 21 2015 Marcelo Bassalo The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) Frederick Griffith The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) Oswald Avery Alfred Hershey Martha Chase The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) • X-ray diffraction and the structure of proteins (1951) Linus Carl Pauling The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) • X-ray diffraction and the structure of proteins (1951) • The structure of DNA (1953) James Watson and Francis Crick The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) • X-ray diffraction and the structure of proteins (1951) • The structure of DNA (1953) How is DNA (4 nucleotides) the genetic material while proteins (20 amino acids) are the building blocks? ? DNA Protein ? The Coding Craze ? DNA Protein What was already known? • DNA resides inside the nucleus - DNA is not the carrier • Protein synthesis occur in the cytoplasm through ribosomes {• Only RNA is associated with ribosomes (no DNA) - rRNA is not the carrier { • Ribosomal RNA (rRNA) was a homogeneous population The “messenger RNA” hypothesis François Jacob Jacques Monod The Coding Craze ? DNA RNA Protein RNA Tie Club Table from Wikipedia The Coding Craze Who won the race Marshall Nirenberg J. -
The Eighth Day of Creation”: Looking Back Across 40 Years to the Birth of Molecular Biology and the Roots of Modern Cell Biology
“The Eighth Day of Creation”: looking back across 40 years to the birth of molecular biology and the roots of modern cell biology Mark Peifer1 1 Department of Biology and Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, CB#3280, Chapel Hill, NC 27599-3280, USA * To whom correspondence should be addressed Email: [email protected] Phone: (919) 962-2272 1 Forty years ago, Horace Judson’s “The Eight Day of Creation” was published, a book vividly recounting the foundations of modern biology, the molecular biology revolution. This book inspired many in my generation. The anniversary provides a chance for a new generation to take a look back, to see how science has changed and hasn’t changed. Many central players in the book, including Sydney Brenner, Seymour Benzer and Francois Jacob, would go on to be among the founders of modern cell, developmental, and neurobiology. These players come alive via their own words, as complex individuals, both heroes and anti-heroes. The technologies and experimental approaches they pioneered, ranging from cell fractionation to immunoprecipitation to structural biology, and the multidisciplinary approaches they took continue to power and inspire our work today. In the process, Judson brings out of the shadows the central roles played by women in many of the era’s discoveries. He provides us with a vision of how science and scientists have changed, of how many things about our endeavor never change, and how some new ideas are perhaps not as new as we’d like to think. 2 In 1979 Horace Judson completed a ten-year project about cell and molecular biology’s foundations, unveiling “The Eighth Day of Creation”, a book I view as one of the most masterful evocations of a scientific revolution (Judson, 1979). -
In 1953 in England James Watson and Francis Crick Discovered the Structure of DNA in the Now-Famous Scientific Narrative Known As the “Race Towards the Double Helix”
THE NARRATIVES OF SCIENCE: LITERARY THEORY AND DISCOVERY IN MOLECULAR BIOLOGY PRIYA VENKATESAN In 1953 in England James Watson and Francis Crick discovered the structure of DNA in the now-famous scientific narrative known as the “race towards the double helix”. Meanwhile in France, Roland Barthes published his first book, Writing Degree Zero, on literary theory, which became the intellectual precursor for the new human sciences that were developing based on Saussurean linguistics. The discovery by Watson and Crick of the double helix marked a definitive turning point in the development of the life sciences, paving the way for the articulation of the genetic code and the emergence of molecular biology. The publication by Barthes was no less significant, since it served as an exemplar for elucidating how literary narratives are structured and for formulating how textual material is constructed. As Françoise Dosse notes, Writing Degree Zero “received unanimous acclaim and quickly became a symptom of new literary demands, a break with tradition”.1 Both the work of Roland Barthes and Watson and Crick served as paradigms in their respective fields. Semiotics, the field of textual analysis as developed by Barthes in Writing Degree Zero, offered a new direction in the structuring of narrative whereby each distinct unit in a story formed a “code” or “isotopy” that categorizes the formal elements of the story. The historical concurrence of the discovery of the double helix and the publication of Writing Degree Zero may be mere coincidence, but this essay is an exploration of the intellectual influence that both events may have had on each other, since both the discovery of the double helix and Barthes’ publication gave expression to the new forms of knowledge 1 Françoise Dosse, History of Structuralism: The Rising Sign, 1945-1966, trans. -
Cover June 2011
z NOBEL LAUREATES IN Qui DNA RESEARCH n u SANGRAM KESHARI LENKA & CHINMOYEE MAHARANA F 1. Who got the Nobel Prize in Physiology or Medicine 1933) for discovering the famous concept that says chromosomes carry genes? a. Gregor Johann Mendel b. Thomas Hunt Morgan c. Aristotle d. Charles Darwin 5. Name the Nobel laureate (1959) for his discovery of the mechanisms in the biological 2. The concept of Mutations synthesis of ribonucleic acid and are changes in genetic deoxyribonucleic acid? information” awarded him a. Arthur Kornberg b. Har Gobind Khorana the Nobel Prize in 1946: c. Roger D. Kornberg d. James D. Watson a. Hermann Muller b. M.F. Perutz c. James D. Watson 6. Discovery of the DNA double helix fetched them d. Har Gobind Khorana the Nobel Prize in Physiology or Medicine (1962). a. Francis Crick, James Watson, Rosalind Elsie Franklin b. Francis Crick, James Watson and Maurice Willkins c. James Watson, Maurice Willkins, Rosalind Elsie Franklin 3. Identify the discoverer and d. Maurice Willkins, Rosalind Elsie Franklin and Francis Crick Nobel laureate of 1958 who found DNA in bacteria and viruses. a. Louis Pasteur b. Alexander Fleming c. Joshua Lederberg d. Roger D. Kornberg 4. A direct link between genes and enzymatic reactions, known as the famous “one gene, one enzyme” hypothesis, was put forth by these 7. They developed the theory of genetic regulatory scientists who shared the Nobel Prize in mechanisms, showing how, on a molecular level, Physiology or Medicine, 1958. certain genes are activated and suppressed. Name a. George Wells Beadle and Edward Lawrie Tatum these famous Nobel laureates of 1965. -
Is There Any Role for Camp–CRP in Carbon Catabolite Repression of The
LINK TO ORIGINAL ARTICLE CORRESPONDENCE LINK TO Author’S REPLY glucose. It has been established that the level of cAMP in lactose-grown cells is low Is there any role for cAMP–CRP compared with other less-preferred carbon sources, but nevertheless is slightly higher in carbon catabolite repression of than the level of cAMP in glucose-grown cells9. Indeed, phosphorylated enzyme the Escherichia coli lac operon? IIAglc (which activates adenylate cyclase) is detected in lactose-grown cells but not Martine Crasnier-Mednansky in glucose-grown cells, as supported by the phosphorylation state of enzyme IIAglc In their review on carbon catabolite repres- case, then adding cAMP should have only detected by Western blotting10. sion (CCR) in bacteria, Boris Görke and a limited effect on diauxie or at least should Finally, other data suggest a role for Jörg Stülke (Carbon catabolite repression stimulate inducer exclusion by enhancing cAMP–CRP in diauxie. For example, a in bacteria: many ways to make the most glucose transport. Consequently, a further PTS sugar-like mannitol can substitute for out of nutrients. Nature Rev. Microbiol. 6, decrease in β-galactosidase expression in the glucose in diauxie production in E. coli 613–624 (2008))1 specifically analysed CCR presence of cAMP would result in enhance- whereas others, such as fructose, do not2. in Escherichia coli. The authors reported their ment of the diauxic lag. In any case, adding This correlates with the observation that view that inducer exclusion, by blocking cAMP would eliminate the diauxic lag. the level of cAMP in mannitol-grown cells the entry of lactose, is the main contributor The next contentious issue arises from the is in the same range as in glucose-grown to CCR when wild-type E. -
Balcomk41251.Pdf (558.9Kb)
Copyright by Karen Suzanne Balcom 2005 The Dissertation Committee for Karen Suzanne Balcom Certifies that this is the approved version of the following dissertation: Discovery and Information Use Patterns of Nobel Laureates in Physiology or Medicine Committee: E. Glynn Harmon, Supervisor Julie Hallmark Billie Grace Herring James D. Legler Brooke E. Sheldon Discovery and Information Use Patterns of Nobel Laureates in Physiology or Medicine by Karen Suzanne Balcom, B.A., M.L.S. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin August, 2005 Dedication I dedicate this dissertation to my first teachers: my father, George Sheldon Balcom, who passed away before this task was begun, and to my mother, Marian Dyer Balcom, who passed away before it was completed. I also dedicate it to my dissertation committee members: Drs. Billie Grace Herring, Brooke Sheldon, Julie Hallmark and to my supervisor, Dr. Glynn Harmon. They were all teachers, mentors, and friends who lifted me up when I was down. Acknowledgements I would first like to thank my committee: Julie Hallmark, Billie Grace Herring, Jim Legler, M.D., Brooke E. Sheldon, and Glynn Harmon for their encouragement, patience and support during the nine years that this investigation was a work in progress. I could not have had a better committee. They are my enduring friends and I hope I prove worthy of the faith they have always showed in me. I am grateful to Dr. -
VU Research Portal
VU Research Portal Dynamic regulation of yeast glycolysis through trehalose cycling van Heerden, J.H. 2016 document version Publisher's PDF, also known as Version of record Link to publication in VU Research Portal citation for published version (APA) van Heerden, J. H. (2016). Dynamic regulation of yeast glycolysis through trehalose cycling: a probabilistic view of metabolic transitions. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. E-mail address: [email protected] Download date: 09. Oct. 2021 Dynamic regulation of yeast glycolysis through trehalose cycling a probabilistic view of metabolic transitions Johan H. van Heerden Members of the Doctoral Examination Committee: prof. dr. Hans V. Westerhoff VU University, Amsterdam prof. dr. Stefan Hohmann University of Gothenburg prof. dr. Barbara -
Camp Receptor Protein–Camp Plays a Crucial Role in Glucose–Lactose Diauxie by Activating the Major Glucose Transporter Gene in Escherichia Coli
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 12914–12919, November 1997 Biochemistry cAMP receptor protein–cAMP plays a crucial role in glucose–lactose diauxie by activating the major glucose transporter gene in Escherichia coli KEIKO KIMATA*, HIDEYUKI TAKAHASHI*, TOSHIFUMI INADA*, PIETER POSTMA†, AND HIROJI AIBA*‡ *Department of Molecular Biology, School of Science, Nagoya University, Chikusa, Nagoya 464-01, Japan; and †E. C. Slater Institute, BioCentrum, University of Amsterdam, Plantage Muidergracht 12, 1018 TV Amsterdam, The Netherlands Communicated by Sydney Kustu, University of California, Berkeley, CA, September 17, 1997 (received for review May 2, 1997) ABSTRACT The inhibition of b-galactosidase expression certain conditions, for example, when added to cells growing in a medium containing both glucose and lactose is a typical on a poor carbon source such as glycerol or succinate (6, 7). example of the glucose effect in Escherichia coli. We studied the Glucose is thought to reduce cAMP level by decreasing the glucose effect in the lacL8UV5 promoter mutant, which is phosphorylated form of enzyme IIAGlc, which is proposed to independent of cAMP and cAMP receptor protein (CRP). A be involved in the activation of adenylate cyclase (3–5). strong inhibition of b-galactosidase expression by glucose and Glucose also is known to reduce the CRP level through the a diauxic growth were observed when the lacL8UV5 cells were autoregulation of the crp gene (7–10). grown on a glucose–lactose medium. The addition of isopropyl When E. coli finds both glucose and lactose in the medium, b-D-thiogalactoside to the culture medium eliminated the it preferentially uses the glucose, and the use of lactose is glucose effect. -
Coupling Gene Regulatory Patterns to Bioprocess Conditions to Optimize
Peng et al. Biotechnol Biofuels (2017) 10:43 DOI 10.1186/s13068-017-0728-x Biotechnology for Biofuels RESEARCH Open Access Coupling gene regulatory patterns to bioprocess conditions to optimize synthetic metabolic modules for improved sesquiterpene production in yeast Bingyin Peng1, Manuel R. Plan1,2, Alexander Carpenter1, Lars K. Nielsen1 and Claudia E. Vickers1* Abstract Background: Assembly of heterologous metabolic pathways is commonly required to generate microbial cell facto- ries for industrial production of both commodity chemicals (including biofuels) and high-value chemicals. Promoter- mediated transcriptional regulation coordinates the expression of the individual components of these heterologous pathways. Expression patterns vary during culture as conditions change, and this can influence yeast physiology and productivity in both positive and negative ways. Well-characterized strategies are required for matching transcrip- tional regulation with desired output across changing culture conditions. Results: Here, constitutive and inducible regulatory mechanisms were examined to optimize synthetic isoprenoid metabolic pathway modules for production of trans-nerolidol, an acyclic sesquiterpene alcohol, in yeast. The choice of regulatory system significantly affected physiological features (growth and productivity) over batch cultivation. Use of constitutive promoters resulted in poor growth during the exponential phase. Delaying expression of the assembled metabolic modules using the copper-inducible CUP1 promoter resulted in a 1.6-fold increase in the exponential- phase growth rate and a twofold increase in productivity in the post-exponential phase. However, repeated use of the CUP1 promoter in multiple expression cassettes resulted in genetic instability. A diauxie-inducible expression system, based on an engineered GAL regulatory circuit and a set of four different GAL promoters, was characterized and employed to assemble nerolidol synthetic metabolic modules. -
Alfred Henry Sturtevant
NATIONAL ACADEMY OF SCIENCES A LFRED HENRY S TURTEVANT 1891—1970 A Biographical Memoir by E D WA R D B . L E W IS Any opinions expressed in this memoir are those of the author(s) and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoir COPYRIGHT 1998 NATIONAL ACADEMIES PRESS WASHINGTON D.C. CourtesyoftheInstituteArchives,CaliforniaInstitueofTechnology,Pasadena ALFREDHENRYSTURTEVANT November21,1891—April5,1970 BYEDWARDB.LEWIS TURTEVANTWASTHEyoungestofsixchildrenofAlfred SHenrySturtevantandHarrietEvelynMorse.Hisgrand- fatherJulianM.SturtevantgraduatedfromYaleDivinity SchoolandwasafounderandlaterpresidentofIllinois College.Sturtevant’sfathertaughtmathematicsforatime atIllinoisCollegebutsubsequentlyturnedtofarming,first inIllinoisandlaterinsouthernAlabama,wherethefamily movedwhenSturtevantwasseven.Hisearlyeducationwas inAlabamainaone-roomcountryschool,butforthelast threeyearsofhighschoolhewenttoapublicschoolin Mobile. Inthefallof1908SturtevantenteredColumbiaUniver- sity.Thechoice,acrucialone,wasmadebecauseSturtevant’s oldestbrother,Edgar,wasthenteachingLatinandGreek atBarnardCollege;Edgarandhiswifemadeitpossible forSturtevanttoattendtheuniversitybytakinghiminto theirhome.SturtevantwasgreatlyinfluencedbyEdgar, fromwhomhelearnedtheaimsandstandardsofscholar- shipandresearch. AsaboySturtevanthaddrawnupthepedigreesofhis father’shorsesandofhisownfamily.Hepursuedthisinter- ReprintedwithpermissionfromDictionaryofScientificBiography,vol.13,pp.133-38. NewYork:Chas.Scribner’sSons,1976. 3 4 BIOGRAPHICALMEMOIRS