The SNARE Protein, Syntaxin1a, Plays an Essential Role in Biphasic Exocytosis of The
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Differential Requirement of NPHP1 for Compartmentalized Protein Localization During
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427412; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Differential requirement of NPHP1 for compartmentalized protein localization during 2 photoreceptor outer segment development and maintenance 3 4 Poppy Dattaa,b,#, J. Thomas Cribbsa,b,#, and Seongjin Seoa,b,* 5 6 aDepartment of Ophthalmology and Visual Sciences, The University of Iowa Carver College of Medicine, Iowa 7 City, IA 52242, U.S.A. 8 bInstitute for Vision Research, The University of Iowa, Iowa City, IA 52242, U.S.A. 9 10 11 #Equally contributed 12 *To whom correspondence should be addressed: 13 Seongjin Seo, PhD 14 Department of Ophthalmology and Visual Sciences 15 University of Iowa College of Medicine 16 375 Newton Rd 17 3181D MERF 18 Iowa City, IA 52242, U.S.A. 19 Phone: 1-319-353-4477 20 Email: [email protected] 21 22 Running title: Roles of NPHP1 in photoreceptors 23 Keywords: cilia; ciliary gate; compartmentalization; inherited retinal degeneration; nonsense-associated altered 24 splicing; protein confinement; transition zone 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427412; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Protein Interaction Network of Alternatively Spliced Isoforms from Brain Links Genetic Risk Factors for Autism
ARTICLE Received 24 Aug 2013 | Accepted 14 Mar 2014 | Published 11 Apr 2014 DOI: 10.1038/ncomms4650 OPEN Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism Roser Corominas1,*, Xinping Yang2,3,*, Guan Ning Lin1,*, Shuli Kang1,*, Yun Shen2,3, Lila Ghamsari2,3,w, Martin Broly2,3, Maria Rodriguez2,3, Stanley Tam2,3, Shelly A. Trigg2,3,w, Changyu Fan2,3, Song Yi2,3, Murat Tasan4, Irma Lemmens5, Xingyan Kuang6, Nan Zhao6, Dheeraj Malhotra7, Jacob J. Michaelson7,w, Vladimir Vacic8, Michael A. Calderwood2,3, Frederick P. Roth2,3,4, Jan Tavernier5, Steve Horvath9, Kourosh Salehi-Ashtiani2,3,w, Dmitry Korkin6, Jonathan Sebat7, David E. Hill2,3, Tong Hao2,3, Marc Vidal2,3 & Lilia M. Iakoucheva1 Increased risk for autism spectrum disorders (ASD) is attributed to hundreds of genetic loci. The convergence of ASD variants have been investigated using various approaches, including protein interactions extracted from the published literature. However, these datasets are frequently incomplete, carry biases and are limited to interactions of a single splicing isoform, which may not be expressed in the disease-relevant tissue. Here we introduce a new interactome mapping approach by experimentally identifying interactions between brain-expressed alternatively spliced variants of ASD risk factors. The Autism Spliceform Interaction Network reveals that almost half of the detected interactions and about 30% of the newly identified interacting partners represent contribution from splicing variants, emphasizing the importance of isoform networks. Isoform interactions greatly contribute to establishing direct physical connections between proteins from the de novo autism CNVs. Our findings demonstrate the critical role of spliceform networks for translating genetic knowledge into a better understanding of human diseases. -
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Soluble NSF Attachment Protein Receptors (SNAREs) in RBL-2H3 Mast Cells: Functional Role of Syntaxin 4 in Exocytosis and Identification of a Vesicle-Associated This information is current as Membrane Protein 8-Containing Secretory of September 25, 2021. Compartment Fabienne Paumet, Joëlle Le Mao, Sophie Martin, Thierry Galli, Bernard David, Ulrich Blank and Michèle Roa Downloaded from J Immunol 2000; 164:5850-5857; ; doi: 10.4049/jimmunol.164.11.5850 http://www.jimmunol.org/content/164/11/5850 http://www.jimmunol.org/ References This article cites 60 articles, 36 of which you can access for free at: http://www.jimmunol.org/content/164/11/5850.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 25, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2000 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Soluble NSF Attachment Protein Receptors (SNAREs) in RBL-2H3 Mast Cells: Functional Role of Syntaxin 4 in Exocytosis and Identification of a Vesicle-Associated Membrane Protein 8-Containing Secretory Compartment1 Fabienne Paumet,* Joe¨lle Le Mao,* Sophie Martin,* Thierry Galli,† Bernard David,* Ulrich Blank,* and Miche`le Roa2* Mast cells upon stimulation through high affinity IgE receptors massively release inflammatory mediators by the fusion of spe- cialized secretory granules (related to lysosomes) with the plasma membrane. -
SNARE Proteins and the Timing of Neurotransmitter Release
Molecular Psychiatry (1998) 3, 293–297 1998 Stockton Press All rights reserved 1359–4184/98 $12.00 NEWS & VIEWS SNARE proteins and the timing of neurotransmitter release The SNARE complex proteins have been implicated in exocytotic neurotransmitter release and other forms of membrane fusion. Recent work shows that NSF, the ATPase of the SNARE complex, regulates the kinetics of neurotransmitter release and can thereby control the inte- grative properties of synapses. Time is one of the most critical parameters in the func- hydrolyzes ATP. Because SNAREs are found on both tioning of the brain. Information transfer on the time- the synaptic vesicle membrane and the plasma mem- scale of milliseconds (10−3 seconds) is typical through- brane, it has been postulated that the various SNARE out the brain and in certain brain regions, such as the complexes mediate the interaction between the two auditory brainstem, time differences on the order of membranes before fusion and thus may be necessary microseconds (10−6 seconds) are used to define the fre- for neurotransmitter release.2 quency and location of perceived sounds. Thus infor- Evidence for a role for SNARE proteins in neuro- mation processing not only depends on a fast underly- transmitter release has come from a variety of sources. ing process but also on the precise timing of synaptic The most compelling indication of the central impor- activity. Such high temporal fidelity must rely upon tance of the three membrane SNARE proteins is that very finely-regulated molecular mechanisms. However, these proteins are remarkably specific targets of tetanus until recently the identity of these mechanisms has and botulinum toxins, a group of potent neurotoxins been remarkably elusive. -
Defining the Kv2.1–Syntaxin Molecular Interaction Identifies a First-In-Class Small Molecule Neuroprotectant
Defining the Kv2.1–syntaxin molecular interaction identifies a first-in-class small molecule neuroprotectant Chung-Yang Yeha,b,1, Zhaofeng Yec,d,1, Aubin Moutale, Shivani Gaura,b, Amanda M. Hentonf,g, Stylianos Kouvarosf,g, Jami L. Salomana, Karen A. Hartnett-Scotta,b, Thanos Tzounopoulosa,f,g, Rajesh Khannae, Elias Aizenmana,b,g,2, and Carlos J. Camachoc,2 aDepartment of Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; bPittsburgh Institute for Neurodegenerative Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; cDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; dSchool of Medicine, Tsinghua University, Beijing 100871, China; eDepartment of Pharmacology, College of Medicine, University of Arizona, Tucson, AZ 85724; fDepartment of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; and gPittsburgh Hearing Research Center, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261 Edited by Lily Yeh Jan, University of California, San Francisco, CA, and approved June 19, 2019 (received for review February 27, 2019) + The neuronal cell death-promoting loss of cytoplasmic K follow- (13). The Kv2.1-dependent cell death pathway is normally initiated ing injury is mediated by an increase in Kv2.1 potassium channels in by the oxidative liberation of zinc from intracellular metal-binding the plasma membrane. This phenomenon relies on Kv2.1 binding to proteins (14), leading to the sequential phosphorylation of syntaxin 1A via 9 amino acids within the channel intrinsically disor- Kv2.1 residues Y124 and S800 by Src and p38 kinases, respectively dered C terminus. Preventing this interaction with a cell and blood- (15–17). -
Goat Anti-STX1A / STX1B Antibody Peptide-Affinity Purified Goat Antibody Catalog # Af2048a
10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 Goat Anti-STX1A / STX1B Antibody Peptide-affinity purified goat antibody Catalog # AF2048a Specification Goat Anti-STX1A / STX1B Antibody - Product Information Application WB Primary Accession Q16623 Other Accession NP_443106, 6804, 112755, 20907 (mouse), 116470 (rat) Reactivity Mouse Predicted Human, Rat, Dog, Cow Host Goat Clonality Polyclonal Concentration 100ug/200ul Isotype IgG Calculated MW 33023 AF2048a (0.003 µg/ml) staining of Mouse Brain lysate (35 µg protein in RIPA buffer). Primary incubation was 1 hour. Detected by Goat Anti-STX1A / STX1B Antibody - Additional Information chemiluminescence. Gene ID 6804 Goat Anti-STX1A / STX1B Antibody - Background Other Names Syntaxin-1A, Neuron-specific antigen HPC-1, This gene encodes a member of the syntaxin STX1A, STX1 superfamily. Syntaxins are nervous system-specific proteins implicated in the Format 0.5 mg IgG/ml in Tris saline (20mM Tris docking of synaptic vesicles with the pH7.3, 150mM NaCl), 0.02% sodium azide, presynaptic plasma membrane. Syntaxins with 0.5% bovine serum albumin possess a single C-terminal transmembrane domain, a SNARE [Soluble NSF Storage (N-ethylmaleimide-sensitive fusion Maintain refrigerated at 2-8°C for up to 6 protein)-Attachment protein REceptor] domain months. For long term storage store at (known as H3), and an N-terminal regulatory -20°C in small aliquots to prevent domain (Habc). Syntaxins bind synaptotagmin freeze-thaw cycles. in a calcium-dependent fashion and interact with voltage dependent calcium and potassium Precautions channels via the C-terminal H3 domain. This Goat Anti-STX1A / STX1B Antibody is for gene product is a key molecule in ion channel research use only and not for use in regulation and synaptic exocytosis. -
SNAP-24, a Novel Drosophila SNARE Protein 4057 Proteins Were Purified on Glutathione Beads and Cleaved from the GST Fig
Journal of Cell Science 113, 4055-4064 (2000) 4055 Printed in Great Britain © The Company of Biologists Limited 2000 JCS1894 SNAP-24, a Drosophila SNAP-25 homologue on granule membranes, is a putative mediator of secretion and granule-granule fusion in salivary glands Barbara A. Niemeyer*,‡ and Thomas L. Schwarz§ Department of Molecular and Cellular Physiology, Stanford Medical School, Stanford, CA 94305, USA *Present address: Department of Pharmacology and Toxicology, School of Medicine, University of Saarland, D-66421 Homburg, Germany ‡Author for correspondence (e-mail: [email protected]) §Present address: Harvard Medical School, Division of Neuroscience, The Children’s Hospital, 300 Longwood Avenue, Boston, MA 02115, USA Accepted 16 September; published on WWW 31 October 2000 SUMMARY Fusion of vesicles with target membranes is dependent is not concentrated in synaptic regions. In vitro studies, on the interaction of target (t) and vesicle (v) SNARE however, show that SNAP-24 can form core complexes with (soluble NSF (N-ethylmaleimide-sensitive fusion protein) syntaxin and both synaptic and non-synaptic v-SNAREs. attachment protein receptor) proteins located on opposing High levels of SNAP-24 are found in larval salivary glands, membranes. For fusion at the plasma membrane, the t- where SNAP-24 localizes mainly to granule membranes SNARE SNAP-25 is essential. In Drosophila, the only rather than the plasma membrane. During glue secretion, known SNAP-25 isoform is specific to neuronal axons and the massive exocytotic event of these glands, SNAP-24 synapses and additional t-SNAREs must exist that mediate containing granules fuse with one another and the apical both non-synaptic fusion in neurons and constitutive and membrane, suggesting that glue secretion utilizes regulated fusion in other cells. -
Early Termination of the Shiga Toxin Transcript Generates a Regulatory Small RNA
Early termination of the Shiga toxin transcript generates a regulatory small RNA Brandon M. Sya, Ruiting Lana, and Jai J. Treea,1 aSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia Edited by Gisela Storz, National Institute of Child Health and Human Development, Bethesda, MD, and approved August 28, 2020 (received for review April 9, 2020) Enterohemorrhagic Escherichia coli is a significant human patho- genes (7). The toxin is released from the host cell by phage- gen that causes disease ranging from hemorrhagic colitis to hemo- induced lysis and during RecA-mediated induction the amount lytic uremic syndrome. The latter can lead to potentially fatal renal of toxin produced is a function of the lytic induction frequency of failure and is caused by the release of Shiga toxins that are the phage. Notably, the Stx1 toxin is also regulated from an in- encoded within lambdoid bacteriophages. The toxins are encoded dependent promoter termed Pstx1 that is repressed by the iron- within the late transcript of the phage and are regulated by anti- responsive transcription factor, Fur, in response to iron suffi- termination of the PR′ late promoter during lytic induction of the ciency and nitric oxide (8, 11, 12). Transcription from Pstx1 leads to phage. During lysogeny, the late transcript is prematurely termi- Stx1 expression and release in the absence of phage-induced lysis nated at tR′ immediately downstream of PR′,generatingashort or phage particle production. RNA that is a byproduct of antitermination regulation. We demon- During lysogeny, the Stxϕ late promoter PR′ is constitutively strate that this short transcript binds the small RNA chaperone Hfq, active, but constitutively terminated at tR′ generating a short transcript and is processed into a stable 74-nt regulatory small RNA that we as a byproduct of regulation by antitermination. -
Epileptic Mechanisms Shared by Alzheimer's Disease
International Journal of Molecular Sciences Review Epileptic Mechanisms Shared by Alzheimer’s Disease: Viewed via the Unique Lens of Genetic Epilepsy Jing-Qiong Kang 1,2 1 Department of Neurology & Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232-8552, USA; [email protected]; Tel.: +1-615-936-8399; Fax: +1-615-322-5517 2 Vanderbilt Kennedy Center of Human Development, Vanderbilt Brain Institute, Vanderbilt University, Nashville, TN 37232-8522, USA Abstract: Our recent work on genetic epilepsy (GE) has identified common mechanisms between GE and neurodegenerative diseases including Alzheimer’s disease (AD). Although both disorders are seemingly unrelated and occur at opposite ends of the age spectrum, it is likely there are shared mechanisms and studies on GE could provide unique insights into AD pathogenesis. Neurodegen- erative diseases are typically late-onset disorders, but the underlying pathology may have already occurred long before the clinical symptoms emerge. Pathophysiology in the early phase of these diseases is understudied but critical for developing mechanism-based treatment. In AD, increased seizure susceptibility and silent epileptiform activity due to disrupted excitatory/inhibitory (E/I) balance has been identified much earlier than cognition deficit. Increased epileptiform activity is likely a main pathology in the early phase that directly contributes to impaired cognition. It is an enormous challenge to model the early phase of pathology with conventional AD mouse models due to the chronic disease course, let alone the complex interplay between subclinical nonconvulsive epileptiform activity, AD pathology, and cognition deficit. We have extensively studied GE, especially with gene mutations that affect the GABA pathway such as mutations in GABAA receptors and GABA transporter Citation: Kang, J.-Q. -
Is Synaptotagmin the Calcium Sensor? Motojiro Yoshihara, Bill Adolfsen and J Troy Littleton
315 Is synaptotagmin the calcium sensor? Motojiro Yoshihara, Bill Adolfsen and J Troy Littletonà After much debate, recent progress indicates that the synaptic synaptotagmins, which are transmembrane proteins con- vesicle protein synaptotagmin I probably functions as the taining tandem calcium-binding C2 domains (C2A and calcium sensor for synchronous neurotransmitter release. C2B) (Figure 1a). Synaptotagmin I is an abundant cal- Following calcium influx into presynaptic terminals, cium-binding synaptic vesicle protein [8,9] that has been synaptotagmin I rapidly triggers the fusion of synaptic vesicles demonstrated via genetic studies to be important for with the plasma membrane and underlies the fourth-order efficient synaptic transmission in vivo [10–13]. The C2 calcium cooperativity of release. Biochemical and genetic domains of synaptotagmin I bind negatively-charged studies suggest that lipid and SNARE interactions underlie phospholipids in a calcium-dependent manner [9,14,15, synaptotagmin’s ability to mediate the incredible speed of 16–18]. There is compelling evidence that phospholipid vesicle fusion that is the hallmark of fast synaptic transmission. binding is an effector interaction in vesicle fusion, as the calcium dependence of this process ( 74 mM) and its Addresses rapid kinetics (on a millisecond scale) (Figure 1b) fit Picower Center for Learning and Memory, Department of Biology and reasonably well with the predicted requirements of Department of Brain and Cognitive Sciences, Massachusetts synaptic transmission [15]. In addition to phospholipid Institute of Technology, Cambridge, MA 02139, USA Ãe-mail: [email protected] binding, the calcium-stimulated interaction between synaptotagmin and the t-SNAREs syntaxin and SNAP- 25 [15,19–23] provides a direct link between calcium and Current Opinion in Neurobiology 2003, 13:315–323 the fusion complex. -
(PRRT2) Regulates the Actin Cytoskeleton During Synaptogenesis
Savino et al. Cell Death and Disease (2020) 11:856 https://doi.org/10.1038/s41419-020-03073-w Cell Death & Disease ARTICLE Open Access Proline-rich transmembrane protein 2 (PRRT2) regulates the actin cytoskeleton during synaptogenesis Elisa Savino1,2, Romina Inès Cervigni1,2, Miriana Povolo1,2, Alessandra Stefanetti2, Daniele Ferrante3, Pierluigi Valente3,4, Anna Corradi3,4, Fabio Benfenati 4,5, Fabrizia Claudia Guarnieri1,2 and Flavia Valtorta 1,2 Abstract Mutations in proline-rich transmembrane protein 2 (PRRT2) have been recently identified as the leading cause of a clinically heterogeneous group of neurological disorders sharing a paroxysmal nature, including paroxysmal kinesigenic dyskinesia and benign familial infantile seizures. To date, studies aimed at understanding its physiological functions in neurons have mainly focused on its ability to regulate neurotransmitter release and neuronal excitability. Here, we show that PRRT2 expression in non-neuronal cell lines inhibits cell motility and focal adhesion turnover, increases cell aggregation propensity, and promotes the protrusion of filopodia, all processes impinging on the actin cytoskeleton. In primary hippocampal neurons, PRRT2 silencing affects the synaptic content of filamentous actin and perturbs actin dynamics. This is accompanied by defects in the density and maturation of dendritic spines. We identified cofilin, an actin-binding protein abundantly expressed at the synaptic level, as the ultimate effector of PRRT2. Indeed, PRRT2 silencing unbalances cofilin activity leading to the formation of cofilin-actin rods along neurites. The expression of a cofilin phospho-mimetic mutant (cof-S3E) is able to rescue PRRT2-dependent defects in synapse 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; density, spine number and morphology, but not the alterations observed in neurotransmitter release. -
Fluorescence Lifetime Imaging Microscopy Reveals Rerouting Of
RESEARCH ARTICLE Fluorescence Lifetime Imaging Microscopy reveals rerouting of SNARE trafficking driving dendritic cell activation Danie¨ lle Rianne Jose´ Verboogen, Natalia Gonza´ lez Mancha, Martin ter Beest, Geert van den Bogaart* Department of Tumor Immunology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, Netherlands Abstract SNARE proteins play a crucial role in intracellular trafficking by catalyzing membrane fusion, but assigning SNAREs to specific intracellular transport routes is challenging with current techniques. We developed a novel Fo¨ rster resonance energy transfer-fluorescence lifetime imaging microscopy (FRET-FLIM)-based technique allowing visualization of real-time local interactions of fluorescently tagged SNARE proteins in live cells. We used FRET-FLIM to delineate the trafficking steps underlying the release of the inflammatory cytokine interleukin-6 (IL-6) from human blood- derived dendritic cells. We found that activation of dendritic cells by bacterial lipopolysaccharide leads to increased FRET of fluorescently labeled syntaxin 4 with VAMP3 specifically at the plasma membrane, indicating increased SNARE complex formation, whereas FRET with other tested SNAREs was unaltered. Our results revealed that SNARE complexing is a key regulatory step for cytokine production by immune cells and prove the applicability of FRET-FLIM for visualizing SNARE complexes in live cells with subcellular spatial resolution. DOI: 10.7554/eLife.23525.001 *For correspondence: geert. [email protected] Introduction Competing interests: The One of the central paradigms in cell biology is that all intracellular membrane fusion, except for authors declare that no mitochondrial fusion, is catalyzed by soluble NSF (N-ethylmaleimide-sensitive fusion protein) attach- competing interests exist. ment protein receptor (SNARE) proteins (Hong, 2005; Jahn and Scheller, 2006).