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Systematics and Biogeography of the Clusioid Clade (Malpighiales) Brad R
Eastern Kentucky University Encompass Biological Sciences Faculty and Staff Research Biological Sciences January 2011 Systematics and Biogeography of the Clusioid Clade (Malpighiales) Brad R. Ruhfel Eastern Kentucky University, [email protected] Follow this and additional works at: http://encompass.eku.edu/bio_fsresearch Part of the Plant Biology Commons Recommended Citation Ruhfel, Brad R., "Systematics and Biogeography of the Clusioid Clade (Malpighiales)" (2011). Biological Sciences Faculty and Staff Research. Paper 3. http://encompass.eku.edu/bio_fsresearch/3 This is brought to you for free and open access by the Biological Sciences at Encompass. It has been accepted for inclusion in Biological Sciences Faculty and Staff Research by an authorized administrator of Encompass. For more information, please contact [email protected]. HARVARD UNIVERSITY Graduate School of Arts and Sciences DISSERTATION ACCEPTANCE CERTIFICATE The undersigned, appointed by the Department of Organismic and Evolutionary Biology have examined a dissertation entitled Systematics and biogeography of the clusioid clade (Malpighiales) presented by Brad R. Ruhfel candidate for the degree of Doctor of Philosophy and hereby certify that it is worthy of acceptance. Signature Typed name: Prof. Charles C. Davis Signature ( ^^^M^ *-^£<& Typed name: Profy^ndrew I^4*ooll Signature / / l^'^ i •*" Typed name: Signature Typed name Signature ^ft/V ^VC^L • Typed name: Prof. Peter Sfe^cnS* Date: 29 April 2011 Systematics and biogeography of the clusioid clade (Malpighiales) A dissertation presented by Brad R. Ruhfel to The Department of Organismic and Evolutionary Biology in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Biology Harvard University Cambridge, Massachusetts May 2011 UMI Number: 3462126 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. -
Chapter 1 INTRODUCTION Alvaro J. Duque M
Chapter 1 INTRODUCTION Alvaro J. Duque M. Introduction 1.1 INTRODUCTION Northwestern Amazonian forest conservation: a challenge for ecologists The actual deforestation rates in Amazonian rain forests are extremely high. The worst case scenario could lead to an almost total disappearance of the largest tropical forest mass that nowadays exists on the earth, in a relatively short time (Laurance et al. 2001). Patterns of rain forest plant diversity in northwestern (NW) Amazonia have particular importance as plant diversity in this area reaches exceptional high values per unit area (Gentry 1988a, Valencia et al. 1994, ter Steege et al. 2003). To guarantee an effective conservation planning, basic knowledge on the distribution of individual species and species assemblages is necessary. In spite of the fact that information concerning to plant communities has much increased in the last decade, most studies have focused on trees because they are the most conspicuous elements in the forests (Gentry 1988b, Duivenvoorden 1995, 1996, Pitman et al. 1999, 2001, ter Steege et al. 2000, Condit et al. 2002). However, it is well known that vascular plant diversity in tropical rain forests is also well represented by other growth forms, such as climbers, shrubs, epiphytes and herbs (Gentry and Dobson 1987, Duivenvoorden 1994, Balslev et al. 1998, Galeano et al. 1998). In addition to this lack of knowledge on non-tree growth forms, most studies have been based on different methodological approaches at individual species or community level, different sample designs, and different spatial scales, which hampers the comparisons and extrapolations among independent case studies. The Pleistocene and Miocene-Pliocene climate history has been considered as the cornerstone to understand the origin of the plant and animal biodiversity and biogeography in Amazonian rain forests (Haffer 1969, Colinvaux 1987, Van der Hammen and Absy 1994, Hooghiemstra and van der Hammen 1998). -
A Preliminary Checklist of the Vascular Plants and a Key to Ficus of Goualougo Triangle, Nouabalé-Ndoki National Park, Republic of Congo
A Preliminary checklist of the Vascular Plants and a key to Ficus of Goualougo Triangle, Nouabalé-Ndoki National Park, Republic of Congo. Sydney Thony Ndolo Ebika MSc Thesis Biodiversity and Taxonomy of Plants University of Edinburgh Royal Botanic Garden Edinburgh Submitted: August 2010 Cover illustration: Aptandra zenkeri, Olacaceae Specimen: Ndolo Ebika, S.T. 28 By Sydney Thony Ndolo Ebika Acknowledgments Acknowledgments The achievement of this MSc thesis in Biodiversity and Taxonomy of Plants is the result of advice, support, help and frank collaboration between different people and organizations and institutions. Without these people this thesis could not have been achieved. My deep grateful thanks go to both Dr. Moutsamboté, J.-M. ( Rural Development Institute, Marien Ngouabi University, Republic of Congo ) and Dr. Harris, D.J. (Royal Botanic Garden Edinburgh) who gave me a powerful boost in studying plants during the botanic training workshop titled Inventory and Identification they organized at Kabo, Republic of Congo, in August 2006. Especially I would like to thank Dr. Harris, because the collaboration he established with the Goualougo Triangle Ape Project, Nouabalé- Ndoki National Park (NNNP), project I was working for, and his continued support for me has been very important to my training as a botanist. The Goualougo Triangle Ape Project (GTAP) is the area where all of the specimens treated in this thesis were collected. The team of this project was always looking after me night and day from 2006 to 2009. I would like to thank both principal investigators of the Triangle both Dr. Morgan, D. and Dr. Sanz, C. for their support to me. -
Etimologia Antillas
Etimología de los géneros de plantas fanerógamas en las Antillas JOSÉ A. MARI MUT 2019-2020 Etimología de los géneros de plantas fanerógamas en las Antillas En la portada: flor de Ossaea krugii, planta endémica de Puerto Rico. Ossaea- por José Antonio de la Ossa (?-c.1830), botánico cubano, director del primer jardín botánico de la Havana; krugii- por Karl Wilhelm Leopold Krug (1833-1898), empresario, naturalista y botánico alemán, vivió en Mayagüez, Puerto Rico de 1857 a 1867, patrón de la investigación botánica en la isla. Fotografía por el autor. © 2019 edicionesdigitales.info. Esta publicación puede ser copiada y distribuida libremente con propósitos académicos, sin fines de lucro. Actualizado por última vez el 19 de abril de 2020. Introducción Esta publicación expande y sustituye mis trabajos sobre la etimología de los géneros de plantas en Puerto Rico y de los géneros de plantas fanerógamas (con semillas) en La Española y en Cuba. Para que no se pierda la información sobre los géneros de plantas sin semillas incluidos en la primera publicación, los mismos se colocan aquí en un apéndice. De las plantas con semillas se incluyen en este trabajo 2072 géneros, en el apéndice hay otros 101. Determinar el significado de un nombre genérico es tarea simple cuando el autor lo ha explicado o cuando existe una inequívoca correspondencia entre el nombre y una característica muy particular de la planta. La tarea se complica cuando lo anterior no ha sucedido y la etimología ha sido objeto de deducciones e interpretaciones por distintos autores, a menudo sin haber visto la descripción original del género. -
Reconstructing Deep‐Time Palaeoclimate Legacies in The
Received: 25 October 2016 | Revised: 23 December 2017 | Accepted: 4 January 2018 DOI: 10.1111/geb.12724 RESEARCH PAPER Reconstructing deep-time palaeoclimate legacies in the clusioid Malpighiales unveils their role in the evolution and extinction of the boreotropical flora Andrea S. Meseguer1,2,3 | Jorge M. Lobo4 | Josselin Cornuault1 | David Beerling5 | Brad R. Ruhfel6,7 | Charles C. Davis7 | Emmanuelle Jousselin2 | Isabel Sanmartín1 1Department of Biodiversity and Conservation, Real Jardín Botanico, Abstract RJB-CSIC, Madrid, Spain Aim: During its entire history, the Earth has gone through periods of climate change similar in scale 2 INRA, UMR 1062 CBGP (INRA, IRD, and pace to the warming trend observed today in the Anthropocene. The impact of these ancient CIRAD, Montpellier SupAgro), The Center for Biology and Management of Populations climatic events on the evolutionary trajectories of organisms provides clues on the organismal (CBGP), Montferrier-sur-Lez, France response to climate change, including extinction, migration and persistence. Here, we examine the 3CNRS, UMR 5554 Institut des Sciences de evolutionary response to climate cooling/warming events of the clusioid families Calophyllaceae, l’Evolution (Universite de Montpellier), Podostemaceae and Hypericaceae (CPH clade) and the genus Hypericum as test cases. Montpellier, France 4Department of Biogeography and Global Location: Holarctic. Change, Museo Nacional Ciencias Naturales, Time period: Late Cretaceous–Cenozoic. MNCN-CSIC, Madrid, Spain 5Department of Animal and Plant Sciences, Major taxa studied: Angiosperms. University of Sheffield, Sheffield, United Kingdom Methods: We use palaeoclimate simulations, species distribution models and phylogenetic com- 6Department of Biological Sciences, Eastern parative approaches calibrated with fossils. Kentucky University, Richmond, Kentucky Results: Ancestral CPH lineages could have been distributed in the Holarctic 100 Ma, occupying 7 Department of Organismic and tropical subhumid assemblages, a finding supported by the fossil record. -
Universidade Federal Do Ceará Centro De Ciências
UNIVERSIDADE FEDERAL DO CEARÁ CENTRO DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA CURSO DE CIÊNCIAS BIOLÓGICAS DIEGO COSTA FARIAS FLORA DO CEARÁ, BRASIL: CLUSIACEAE FORTALEZA 2021 DIEGO COSTA FARIAS FLORA DO CEARÁ, BRASIL: CLUSIACEAE Monografia apresentada ao curso de Bacharelado em Ciências Biológicas do Centro de Ciências da Universidade Federal do Ceará, como requisito para a obtenção do título de Bacharel em Ciências Biológicas. Orientadora: Profa. Dra. Maria Iracema Bezerra Loiola FORTALEZA 2021 DIEGO COSTA FARIAS FLORA DO CEARÁ, BRASIL: CLUSIACEAE Monografia apresentada ao curso de Bacharelado em Ciências Biológicas do Centro de Ciências da Universidade Federal do Ceará, como requisito para obtenção do título de Bacharel em Ciências Biológicas. Aprovada em: / / BANCA EXAMINADORA Profa. Dra. Maria Iracema Bezerra Loiola (Orientador) Universidade Federal do Ceará (UFC) Profa. Dra. Ligia Queiroz Matias Universidade Federal do Ceará (UFC) Profa. Dra. Valéria da Silva Sampaio Universidade Estadual do Ceará (UECE) Às vítimas da pandemia da COVID-19, em especial aos mais de 260.000 mil brasileiros que perderam a batalha para o novo coronavírus. AGRADECIMENTOS Ao CNPq, pelo apoio financeiro com a bolsa de fomento à pesquisa, o que possibilitou a realização do presente estudo. Agradeço à minha família, em especial minha mãe, Luzanete, por ter me concedido todo apoio e amparo para chegar até aqui, sempre me incentivando e me ensinando a ser o melhor de mim. Agradeço também aos meus irmãos Lia e Lucas e ao meu cunhado Gil, a quem tenho como irmão, pelo apoio, torcida e exemplo. À minha orientadora, Profa. Dra. Iracema Loiola, por todas as oportunidades concedidas a mim, bem como seus ensinamentos, e por ter me dado a oportunidade de explorar a flora cearense. -
Brad R. Ruhfel 2,8 , Volker Bittrich 3 , Claudia P. Bove 4 , Mats H. G
American Journal of Botany 98(2): 306–325. 2011. P HYLOGENY OF THE CLUSIOID CLADE (MALPIGHIALES): E VIDENCE FROM THE PLASTID AND MITOCHONDRIAL GENOMES 1 Brad R. Ruhfel 2,8 , Volker Bittrich 3 , Claudia P. Bove 4 , Mats H. G. Gustafsson 5 , C. Thomas Philbrick 6 , Rolf Rutishauser 7 , Zhenxiang Xi 2 , and Charles C. Davis 2,8 2 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138 USA; 3 Rua Dr. M á rio de Nucci, 500, Cidade Universit á ria 13083-290, Campinas, Brazil; 4 Departamento de Bot â nica, Museu Nacional, Universidade Federal do Rio de Janeiro, Quinta da Boa Vista, Rio de Janeiro 20940-040, Brazil; 5 Ecoinformatics and Biodiversity, Department of Biological Sciences, Aarhus University, Ole Worms All é , Building 1137, 8000 Å rhus C, Denmark; 6 Western Connecticut State University, Biological & Environmental Sciences, 181 White Street, Danbury, Connecticut 06810 USA; and 7 University of Zurich, Institute of Systematic Botany, Zollikerstrasse 107, CH-8008 Zurich, Switzerland • Premise of the study : The clusioid clade includes fi ve families (i.e., Bonnetiaceae, Calophyllaceae, Clusiaceae s.s., Hyperi- caceae, and Podostemaceae) represented by 94 genera and ~1900 species. Species in this clade form a conspicuous element of tropical forests worldwide and are important in horticulture, timber production, and pharmacology. We conducted a taxon-rich multigene phylogenetic analysis of the clusioids to clarify phylogenetic relationships in this clade. • Methods : We analyzed plastid ( matK , ndhF , and rbcL ) and mitochondrial (matR ) nucleotide sequence data using parsimony, maximum likelihood, and Bayesian inference. Our combined data set included 194 species representing all major clusioid subclades, plus numerous species spanning the taxonomic, morphological, and biogeographic breadth of the clusioid clade. -
Advances in the Floral Structural Characterization of the Major Subclades of Malpighiales, One of the Largest Orders of Flowering Plants
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 Advances in the floral structural characterization of the major subclades of Malpighiales, one of the largest orders of flowering plants Endress, Peter K ; Davis, Charles C ; Matthews, Merran L DOI: https://doi.org/10.1093/aob/mct056 Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-78190 Journal Article Published Version Originally published at: Endress, Peter K; Davis, Charles C; Matthews, Merran L (2013). Advances in the floral structural characterization of the major subclades of Malpighiales, one of the largest orders of flowering plants. Annals of Botany, 111(5):969-985. DOI: https://doi.org/10.1093/aob/mct056 Annals of Botany 111: 969–985, 2013 doi:10.1093/aob/mct056, available online at www.aob.oxfordjournals.org Advances in the floral structural characterization of the major subclades of Malpighiales, one of the largest orders of flowering plants Peter K. Endress1,*, Charles C. Davis2 and Merran L. Matthews1 1Institute of Systematic Botany, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland and 2Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, MA 02138, USA * For correspondence. E-mail [email protected] Received: 28 November 2012 Revision requested: 21 December 2012 Accepted: 24 January 2013 Published electronically: 13 March 2013 † Background and Aims Malpighiales are one of the largest angiosperm orders and have undergone radical sys- tematic restructuring based on molecular phylogenetic studies. The clade has been recalcitrant to molecular Downloaded from phylogenetic reconstruction, but has become much more resolved at the suprafamilial level. -
Vascular Plant Species List Excluding: Pteriodophyte (Ferns & Allies) & Orchidaceae (Orchids)
Vascular Plant Species List Excluding: Pteriodophyte (Ferns & Allies) & Orchidaceae (Orchids) Higher Classification1 Kingdom: Plantae, Phylum: Tracheophyta Class (C:), Order (O:) and Family (F:) Scientific Name1 English Name2 C: Equisetopsida (Horsetails) See Fern & Allies Species List3 C: Filicopsida See Fern & Allies Species List3 (Leptosporangiate Ferns) C: Isoetopsida (Isotopsids) See Fern & Allies Species List3 C: Liliopsida (Monocots) O: Alismatales F: Araceae (Arum) Anthurium concinnatum (Flamingo Plant) Anthurium salvinii Bird’s-nest Anthurium Colocasia sp. Monstera deliciosa Willowleaf Monstera dissecta Monstera epipremnoides Syngonium sp. O: Arecales F: Arecaceae (Palm) Chamaedorea pittieri Chamaedorea sp. Geonoma sp. Geonoma undata subsp. edulis Prestoea longepetiolata O: Asparagales F: Orchidaceae (Orchid) See Orchid Species List4 O: Commelinaceae F: Commelinaceae Commelina sp. (Dayflower) (Spiderwort) Tradescantia poelliae (Spiderwort) Tradescantia zanonia (Spiderwort) O: Pandanales F: Cyclanthaceae Cyclanthaceae sp. (Panama-hat) O: Liliales F: Liliaceae (Lily) Lilium longiflorum Easter Lily O: Poales (Grasses) F: Bromeliaceae Catopsis nutans Nodding Strap Airplant (Bromeliad) Tillandsia leiboldiana (Airplant) Tillandsia punctulata (Airplant) Vriesea spp. F: Cyperaceae (Sedge) Cyperus papyrus Papyrus Kyllinga sp. Rhynchospora sp. F: Poaceae Brachiaria cf. ruziziensis Congo Grass (True Grasses) Digitaria costaricensis Page 1 of 10 Cloudbridge Nature Reserve, Costa Rica Last Updated: March 9, 2017 Vascular Plant Species List -
Cladogram of Panamanian Clusia Based on Nuclear DNA: Implications for the Origins of Crassulacean Acid Metabolism
Original Paper 59 Cladogram of Panamanian Clusia Based on Nuclear DNA: Implications for the Origins of Crassulacean Acid Metabolism H. H. Gehrig 1, J. Aranda 1, M. A. Cushman 2, A. Virgo 1, J. C. Cushman 2, B. E. Hammel 3, and K. Winter 1 1 Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama 2 University of Nevada, Department of Biochemistry, MS 200, Reno, NV 89557, USA 3 Missouri Botanical Garden, POB 299, St. Louis, MO 63166, USA Received: November 14, 2002; Accepted: January 8, 2003 Abstract: The internal transcribed spacer ITS) region of 18-26S Introduction nuclear ribosomal DNA repeat was sequenced for 31 of the ap- proximately 40 species of Clusia known to occur in Panama. Sev- The neotropical genus Clusia comprises an estimated 300 spe- eral species from other genera of the Clusiaceae were used as cies of woody plants Pipoly et al., 1998) which are either ter- outgroups in the phylogenetic calculation. High sequence align- restrial trees, epiphytes, hemiepiphytes or, occasionally, lianas ment and minimal length variation among ITS-1, 5.8S and ITS-2 and which occur in a large range of habitats, such as lowland sequences facilitated determination of positional homology and montane forests, savannas or coastal sand dunes Lüttge, of nucleotide sizes. Sequence alignment was evaluated with 1991). Clusia taxonomy has been notoriously difficult to study, character state Maximum Parsimony) and distance methods given only morphological data Hammel, 1986; Pipoly et al., Neighbour Joining). Phylogenetic trees obtained with the two 1998). Flowers are present for only short periods and do not re- methods were largely concordant and revealed three main tain their character well in herbarium collections. -
Checklist of the Gymnosperms and Flowering Plants of Central French Guiana
Checklist of the Gymnosperms and Flowering Plants of Central French Guiana by Scott A. Mori1, Carol Gracie1, Michel Hoff2, and Tony Kirchgessner1 1Institute of Systematic Botany 200th Street and Kazimiroff Blvd. The New York Botanical Garden Bronx, New York 10458-5126 2Service du Patrimoine Naturel Institute d'Ecologie et de Gestion de la Biodiversité Muséum national d'Histoire naturelle 57, rue Cuvier F-75005 Paris, France 03 April 2002 Distributed to the libraries of the following institutions: Botanischer Garten und Botanisches Museum Berlin-Dahlem, Berlin Department of Botany, Smithsonian Institution, Washington, D.C., U.S.A. Herbarium, Royal Botanic Gardens, Kew, United Kingdom Herbarium, State University of Utrecht, the Netherlands Institut de Recherche pour le Développement, Cayenne, French Guiana Muséum National d'Histoire Naturelle, Paris, France National Herbarium, University of Suriname, Paramaribo, Suriname New York Botanical Garden, New York, U.S.A. University of Guyana, Georgetown, Guyana Introduction The specimens cited in this checklist serve as vouchers for the species of flowering plants and the single gymnosperm treated in the Guide to the Vascular Plants of Central French Guiana. Part 1. Pteridophytes, Gymnosperms and Monocotyledons (Mori et al., 1997) and the Guide to the Vascular Plants of Central French Guiana. Part 2. Dicotyledons (Mori et al., In press). Throughout this checklist, these publications are spelled out in full or collectively referred to as the Guide. More detailed information about these collections can be found in the specimen database of The New York Botanical Garden (NY). Flowering plant specimens from central French Guiana are identified in the project field as "Flowering Plants of Central French Guiana" and those of gymnosperms are identified as "Gymnosperms of Central French Guiana." Periodically, data from The New York Botanical Garden database is moved onto the internet as part of the web site Fungal and Plant Diversity of Central French Guiana (http://www.nybg.org/bsci/french_guiana/). -
Final Report
Darwin Initiative – Final Report (To be completed with reference to the Reporting Guidance Notes for Project Leaders (http://darwin.defra.gov.uk/resources/reporting/) - it is expected that this report will be a maximum of 20 pages in length, excluding annexes) Darwin project information Project Reference 15/027 Project Title Baseline tools for management in PN La Amistad (Costa Rica/Panama) Host country(ies) Costa Rica, Panama UK Contract Holder The Natural History Museum, London Institution UK Partner Institution(s) Host Country Partner Instituto Nacional de Biodiversidad (INBio), Santo Domingo de Institution(s) Heredia Darwin Grant Value £225,993 Start/End dates of Project July 1 2006 to July 31 2009 Project Leader Name Alex Monro Project Website inbio.ac.cr/proyectopila-darwin Report Author(s) and date Alex Monro, Frank Gonzalez, Oscar Chacon, Eduardo Boza, Angel Solis, Nelson Zamora. Acronyms ANAM: Autoridad Nacional del Ambiente, Panamá INBio: Instituto Nacional de Biodiversidad, Costa Rica NHM: The Natural History Museum, London PILA: La Amistad binational park PMA: Escuela de Biología, Universidad de Panamá. SINAC: Sistema de Áreas Protegidas de Costa Rica TNC: The Nature Conservancy UCR: Escuela de Biología, Universidad de Costa Rica UNACHI: Universidad Autónoma de Chiriquí 1 Project Background PILA represents the second largest state-controlled park and forms the core of the third largest biosphere reserve in Central America. PILA represents a major biodiversity resource. This is recognized in its strategic position in the Mesoamerican Biological Corridor and designation as a UNESCO World Heritage Site. In 2004 a binational strategy was produced with the aim of producing a unified management plan for PILA.