AN ABSTRACF of the THESIS of Daniel L. Luoma for the Degree of Master of Science in Geography Presented on July 1. Title: Syneco
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The Genomic Impact of Mycoheterotrophy in Orchids
fpls-12-632033 June 8, 2021 Time: 12:45 # 1 ORIGINAL RESEARCH published: 09 June 2021 doi: 10.3389/fpls.2021.632033 The Genomic Impact of Mycoheterotrophy in Orchids Marcin J ˛akalski1, Julita Minasiewicz1, José Caius2,3, Michał May1, Marc-André Selosse1,4† and Etienne Delannoy2,3*† 1 Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdansk,´ Gdansk,´ Poland, 2 Institute of Plant Sciences Paris-Saclay, Université Paris-Saclay, CNRS, INRAE, Univ Evry, Orsay, France, 3 Université de Paris, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay, Orsay, France, 4 Sorbonne Université, CNRS, EPHE, Muséum National d’Histoire Naturelle, Institut de Systématique, Evolution, Biodiversité, Paris, France Mycoheterotrophic plants have lost the ability to photosynthesize and obtain essential mineral and organic nutrients from associated soil fungi. Despite involving radical changes in life history traits and ecological requirements, the transition from autotrophy Edited by: Susann Wicke, to mycoheterotrophy has occurred independently in many major lineages of land Humboldt University of Berlin, plants, most frequently in Orchidaceae. Yet the molecular mechanisms underlying this Germany shift are still poorly understood. A comparison of the transcriptomes of Epipogium Reviewed by: Maria D. Logacheva, aphyllum and Neottia nidus-avis, two completely mycoheterotrophic orchids, to other Skolkovo Institute of Science autotrophic and mycoheterotrophic orchids showed the unexpected retention of several and Technology, Russia genes associated with photosynthetic activities. In addition to these selected retentions, Sean W. Graham, University of British Columbia, the analysis of their expression profiles showed that many orthologs had inverted Canada underground/aboveground expression ratios compared to autotrophic species. Fatty Craig Barrett, West Virginia University, United States acid and amino acid biosynthesis as well as primary cell wall metabolism were among *Correspondence: the pathways most impacted by this expression reprogramming. -
A Critique of Phanerozoic Climatic Models Involving Changes in The
Earth-Science Reviews 56Ž. 2001 1–159 www.elsevier.comrlocaterearscirev A critique of Phanerozoic climatic models involving changes in the CO2 content of the atmosphere A.J. Boucot a,), Jane Gray b,1 a Department of Zoology, Oregon State UniÕersity, CorÕallis, OR 97331, USA b Department of Biology, UniÕersity of Oregon, Eugene, OR 97403, USA Received 28 April 1998; accepted 19 April 2001 Abstract Critical consideration of varied Phanerozoic climatic models, and comparison of them against Phanerozoic global climatic gradients revealed by a compilation of Cambrian through Miocene climatically sensitive sedimentsŽ evaporites, coals, tillites, lateritic soils, bauxites, calcretes, etc.. suggests that the previously postulated climatic models do not satisfactorily account for the geological information. Nor do many climatic conclusions based on botanical data stand up very well when examined critically. Although this account does not deal directly with global biogeographic information, another powerful source of climatic information, we have tried to incorporate such data into our thinking wherever possible, particularly in the earlier Paleozoic. In view of the excellent correlation between CO2 present in Antarctic ice cores, going back some hundreds of thousands of years, and global climatic gradient, one wonders whether or not the commonly postulated Phanerozoic connection between atmospheric CO2 and global climatic gradient is more coincidence than cause and effect. Many models have been proposed that attempt to determine atmospheric composition and global temperature through geological time, particularly for the Phanerozoic or significant portions of it. Many models assume a positive correlation between atmospheric CO2 and surface temperature, thus viewing changes in atmospheric CO2 as playing the critical role in r regulating climate temperature, but none agree on the levels of atmospheric CO2 through time. -
Checklist of the Vascular Plants of Redwood National Park
Humboldt State University Digital Commons @ Humboldt State University Botanical Studies Open Educational Resources and Data 9-17-2018 Checklist of the Vascular Plants of Redwood National Park James P. Smith Jr Humboldt State University, [email protected] Follow this and additional works at: https://digitalcommons.humboldt.edu/botany_jps Part of the Botany Commons Recommended Citation Smith, James P. Jr, "Checklist of the Vascular Plants of Redwood National Park" (2018). Botanical Studies. 85. https://digitalcommons.humboldt.edu/botany_jps/85 This Flora of Northwest California-Checklists of Local Sites is brought to you for free and open access by the Open Educational Resources and Data at Digital Commons @ Humboldt State University. It has been accepted for inclusion in Botanical Studies by an authorized administrator of Digital Commons @ Humboldt State University. For more information, please contact [email protected]. A CHECKLIST OF THE VASCULAR PLANTS OF THE REDWOOD NATIONAL & STATE PARKS James P. Smith, Jr. Professor Emeritus of Botany Department of Biological Sciences Humboldt State Univerity Arcata, California 14 September 2018 The Redwood National and State Parks are located in Del Norte and Humboldt counties in coastal northwestern California. The national park was F E R N S established in 1968. In 1994, a cooperative agreement with the California Department of Parks and Recreation added Del Norte Coast, Prairie Creek, Athyriaceae – Lady Fern Family and Jedediah Smith Redwoods state parks to form a single administrative Athyrium filix-femina var. cyclosporum • northwestern lady fern unit. Together they comprise about 133,000 acres (540 km2), including 37 miles of coast line. Almost half of the remaining old growth redwood forests Blechnaceae – Deer Fern Family are protected in these four parks. -
Conservation Strategy for Allotropa Virgata (Candystick), U.S
CONSERVATION STRATEGY FOR ALLOTROPA VIRGATA (CANDYSTICK), U.S. FOREST SERVICE, NORTHERN AND INTERMOUNTAIN REGIONS by Juanita Lichthardt Conservation Data Center Natural Resource Policy Bureau October, 1995 Idaho Department of Fish and Game 600 South Walnut, P.O. Box 25 Boise, Idaho 83707 Jerry M. Conley, Director Cooperative Challenge Cost-share Project Nez Perce National Forest Idaho Department of Fish and Game Purchase Order No.:95-17-20-001 ACKNOWLEDGMENTS I am grateful to the following Forest Service sensitive plant coordinators and botanists who went out of their way to provide valuable consultation, maps, and data: Leonard Lake, Linda Pietarinen, Jim Anderson, Quinn Carver, Alexia Cochrane, and John Joy. These same people are largely responsible for our current level of knowledge about Allotropa virgata. Special thanks to Janet Johnson and Marilyn Olson who found the time to show me Allotropa sites on the Bitterroot and Payette National Forests, respectively. Steve Shelly, Montana Natural Heritage Program/US Forest Service, initiated this project and provided thoughtful review. I hope that this document provides both the practical guidance and theoretical basis needed for a coordinated effort by management agencies toward conservation of Allotropa virgata. i ABSTRACT This conservation strategy provides recommendations for management of National Forest lands supporting and adjoining populations of Allotropa virgata (candystick), a plant species designated as sensitive in Regions 1 and 4 of the US Forest Service. Allotropa virgata presents a special conservation challenge because it is part of a three-way symbiosis involving conifers and their ectomycorrhizal fungi. First, the current state of our knowledge of the species is summarized, including distribution, habitat, ecology, population biology, monitoring results, past impacts, and perceived threats. -
Invisible Connections: Introduction to Parasitic Plants Dr
Invisible Connections: Introduction to Parasitic Plants Dr. Vanessa Beauchamp Towson University What is a parasite? • An organism that lives in or on an organism of another species (its host) and benefits by deriving nutrients at the other's expense. Symbiosis https://www.superpharmacy.com.au/blog/parasites-protozoa-worms-ectoparasites Food acquisition in plants: Autotrophy Heterotrophs (“different feeding”) • True parasites: obtain carbon compounds from host plants through haustoria. • Myco-heterotrophs: obtain carbon compounds from host plants via Image Credit: Flickr User wackybadger, via CC mycorrhizal fungal connection. • Carnivorous plants (not parasitic): obtain nutrients (phosphorus, https://commons.wikimedia.org/wiki/File:Pin nitrogen) from trapped insects. k_indian_pipes.jpg http://www.welivealot.com/venus-flytrap- facts-for-kids/ Parasite vs. Epiphyte https://chatham.ces.ncsu.edu/2014/12/does-mistletoe-harm-trees-2/ By © Hans Hillewaert /, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=6289695 True Parasitic Plants • Gains all or part of its nutrition from another plant (the host). • Does not contribute to the benefit of the host and, in some cases, causing extreme damage to the host. • Specialized peg-like root (haustorium) to penetrate host plants. https://www.britannica.com/plant/parasitic-plant https://chatham.ces.ncsu.edu/2014/12/does-mistletoe-harm-trees-2/ Diversity of parasitic plants Eudicots • Parasitism has evolved independently at least 12 times within the plant kingdom. • Approximately 4,500 parasitic species in Monocots 28 families. • Found in eudicots and basal angiosperms • 1% of the dicot angiosperm species • No monocot angiosperm species Basal angiosperms Annu. Rev. Plant Biol. 2016.67:643-667 True Parasitic Plants https://www.alamy.com/parasitic-dodder-plant-cuscuta-showing-penetration-parasitic-haustor The defining structural feature of a parasitic plant is the haustorium. -
Insectivorous Plants”, He Showed That They Had Adaptations to Capture and Digest Animals
the Strange, the Ugly, and the Bizarre . carnivores, parasites, and mycotrophs . Plant Oddities - Carnivores, Parasites & Mycotrophs Of all the plants, the most bizarre, the least understood, but yet the most interesting are those plants that have unusual modes of nutrient uptake. Carnivore: Nepenthes Plant Oddities - Carnivores, Parasites & Mycotrophs Of all the plants, the most bizarre, the least understood, but yet the most interesting are those plants that have unusual modes of nutrient uptake. Parasite: Rafflesia Plant Oddities - Carnivores, Parasites & Mycotrophs Of all the plants, the most bizarre, the least understood, but yet the most interesting are those plants that have unusual modes of nutrient uptake. Things to focus on for this topic! 1. What are these three types of plants 2. How do they live - selection 3. Systematic distribution in general 4. Systematic challenges or issues 5. Evolutionary pathways - how did they get to what they are Mycotroph: Monotropa Plant Oddities - The Problems Three factors for systematic confusion and controversy 1. the specialized roles often involve reductions or elaborations in both vegetative and floral features — DNA also is reduced or has extremely high rates of change for example – the parasitic Rafflesia Plant Oddities - The Problems Three factors for systematic confusion and controversy 2. their connections to other plants or fungi, or trapping of animals, make these odd plants prone to horizontal gene transfer for example – the parasitic Mitrastema [work by former UW student Tom Kleist] -
This Is Normal Text
NUTRIENT RESOURCES AND STOICHIOMETRY AFFECT THE ECOLOGY OF ABOVE- AND BELOWGROUND INVERTEBRATE CONSUMERS by JAYNE LOUISE JONAS B.S., Wayne State College, 1998 M.S., Kansas State University, 2000 AN ABSTRACT OF A DISSERTATION submitted in partial fulfillment of the requirements for the degree DOCTOR OF PHILOSOPHY Division of Biology College of Arts and Sciences KANSAS STATE UNIVERSITY Manhattan, Kansas 2007 Abstract Aboveground and belowground food webs are linked by plants, but their reciprocal influences are seldom studied. Because phosphorus (P) is the primary nutrient associated with arbuscular mycorrhizal (AM) symbiosis, and evidence suggests it may be more limiting than nitrogen (N) for some insect herbivores, assessing carbon (C):N:P stoichiometry will enhance my ability to discern trophic interactions. The objective of this research was to investigate functional linkages between aboveground and belowground invertebrate populations and communities and to identify potential mechanisms regulating these interactions using a C:N:P stoichiometric framework. Specifically, I examine (1) long-term grasshopper community responses to three large-scale drivers of grassland ecosystem dynamics, (2) food selection by the mixed-feeding grasshopper Melanoplus bivittatus, (3) the mechanisms for nutrient regulation by M. bivittatus, (4) food selection by fungivorous Collembola, and (5) the effects of C:N:P on invertebrate community composition and aboveground-belowground food web linkages. In my analysis of grasshopper community responses to fire, bison grazing, and weather over 25 years, I found that all three drivers affected grasshopper community dynamics, most likely acting indirectly through effects on plant community structure, composition and nutritional quality. In a field study, the diet of M. -
Ectomycorrhizal Fungal Assemblages of Nursery-Grown Scots Pine Are Influenced by Age of the Seedlings
Article Ectomycorrhizal Fungal Assemblages of Nursery-Grown Scots Pine are Influenced by Age of the Seedlings Maria Rudawska * and Tomasz Leski Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; [email protected] * Correspondence: [email protected] Abstract: Scots pine (Pinus sylvestris L.) is the most widely distributed pine species in Europe and is relevant in terms of planted areas and harvest yields. Therefore, each year the demand for planting stock of Scots pine is exceedingly high, and large quantities of seedlings are produced annually throughout Europe to carry out reforestation and afforestation programs. Abundant and diverse ectomycorrhizal (ECM) symbiosis is critical for the success of seedlings once planted in the field. To improve our knowledge of ECM fungi that inhabit bare-root nursery stock of Scots pine and understand factors that influence their diversity, we studied the assemblages of ECM fungi present across 23 bare-root forest nurseries in Poland. Nursery stock samples were characterized by a high level of ECM colonization (nearly 100%), and a total of 29 ECM fungal taxa were found on 1- and 2- year-old seedlings. The diversity of the ECM community depended substantially on the nursery and age of the seedlings, and species richness varied from 3–10 taxa on 1-year-old seedlings and 6–13 taxa on 2-year-old seedlings. The ECM fungal communities that developed on the studied nursery stock were characterized by the prevalence of Ascomycota over Basidiomycota members on 1-year-old seedlings. All ecological indices (diversity, dominance, and evenness) were significantly affected by age of the seedlings, most likely because dominant ECM morphotypes on 1-year-old seedlings (Wilcoxina mikolae) were replaced by other dominant ones (e.g., Suillus luteus, Rhizopogon roseolus, Thelephora terrestris, Hebeloma crustuliniforme), mostly from Basidiomycota, on 2-year-old seedlings. -
Vascular Plants of Santa Cruz County, California
ANNOTATED CHECKLIST of the VASCULAR PLANTS of SANTA CRUZ COUNTY, CALIFORNIA SECOND EDITION Dylan Neubauer Artwork by Tim Hyland & Maps by Ben Pease CALIFORNIA NATIVE PLANT SOCIETY, SANTA CRUZ COUNTY CHAPTER Copyright © 2013 by Dylan Neubauer All rights reserved. No part of this publication may be reproduced without written permission from the author. Design & Production by Dylan Neubauer Artwork by Tim Hyland Maps by Ben Pease, Pease Press Cartography (peasepress.com) Cover photos (Eschscholzia californica & Big Willow Gulch, Swanton) by Dylan Neubauer California Native Plant Society Santa Cruz County Chapter P.O. Box 1622 Santa Cruz, CA 95061 To order, please go to www.cruzcps.org For other correspondence, write to Dylan Neubauer [email protected] ISBN: 978-0-615-85493-9 Printed on recycled paper by Community Printers, Santa Cruz, CA For Tim Forsell, who appreciates the tiny ones ... Nobody sees a flower, really— it is so small— we haven’t time, and to see takes time, like to have a friend takes time. —GEORGIA O’KEEFFE CONTENTS ~ u Acknowledgments / 1 u Santa Cruz County Map / 2–3 u Introduction / 4 u Checklist Conventions / 8 u Floristic Regions Map / 12 u Checklist Format, Checklist Symbols, & Region Codes / 13 u Checklist Lycophytes / 14 Ferns / 14 Gymnosperms / 15 Nymphaeales / 16 Magnoliids / 16 Ceratophyllales / 16 Eudicots / 16 Monocots / 61 u Appendices 1. Listed Taxa / 76 2. Endemic Taxa / 78 3. Taxa Extirpated in County / 79 4. Taxa Not Currently Recognized / 80 5. Undescribed Taxa / 82 6. Most Invasive Non-native Taxa / 83 7. Rejected Taxa / 84 8. Notes / 86 u References / 152 u Index to Families & Genera / 154 u Floristic Regions Map with USGS Quad Overlay / 166 “True science teaches, above all, to doubt and be ignorant.” —MIGUEL DE UNAMUNO 1 ~ACKNOWLEDGMENTS ~ ANY THANKS TO THE GENEROUS DONORS without whom this publication would not M have been possible—and to the numerous individuals, organizations, insti- tutions, and agencies that so willingly gave of their time and expertise. -
Conservation Assessment for Pterospora Andromedea Nutt
Conservation Assessment For Pterospora andromedea Nutt. (Pine-drops) USDA Forest Service, Eastern Region Hiawatha National Forest November 2004 This Conservation Assessment was prepared to compile the published and unpublished information on Pterospora andromedea Nutt. This report provides information to serve as a Conservation Assessment for the Eastern Region of the Forest Service. It is an administrative study only and does not represent a management decision by the U.S. Forest Service. Although the best scientific information available was used and subject experts were consulted in preparation of this document and its review, it is expected that new information will arise. In the spirit of continuous learning and adaptive management, if the reader has any information that will assist in conserving this species, please contact the Eastern Region of the Forest Service – Threatened and Endangered Species Program at 310 Wisconsin Avenue, Suite 580 Milwaukee, Wisconsin 53203. Conservation Assessment for Pterospora andromedea ii Acknowledgements Outside Reviewers: We would like to thank our academic reviewers and agency reviewers outside of the United States Forest Service for their helpful comments on this manuscript. • Phyllis Higman, Botanist, Michigan Natural Features Inventory National Forest Reviewers: We also thank our internal National Forest reviewers for their suggestions and corrections and for providing element occurrences for their National Forests. Complete contact information is available under Contacts section. • Jan Schultz, Forest Plant Ecologist, on the Hiawatha National Forest • Sue Trull, Forest Botanist, on the Ottawa National Forest • Ian Shackleford, Botanist, on the Ottawa National Forest Herbarium and Heritage Data: We appreciate the sharing of occurrence information for this species from Heritage personnel both in the United States and Canada, along with the helpful assistance of Herbarium personnel. -
Molecular Phylogenetic Study of the Tribe Tropidieae (Orchidaceae, Epidendroideae) with Taxonomic and Evolutionary Implications
A peer-reviewed open-access journal PhytoKeys 140: 11–22 (2020) Molecular phylogenetic study of Tropidieae 11 doi: 10.3897/phytokeys.140.46842 RESEARCH ARTICLE http://phytokeys.pensoft.net Launched to accelerate biodiversity research Molecular phylogenetic study of the tribe Tropidieae (Orchidaceae, Epidendroideae) with taxonomic and evolutionary implications Izai A.B. Sabino Kikuchi1, Paul J.A. Keßler1, André Schuiteman2, Jin Murata3, Tetsuo Ohi-Toma3, Tomohisa Yukawa4, Hirokazu Tsukaya5,6 1 Universiteit Leiden, Hortus botanicus Leiden, PO Box 9500, Leiden, 2300 RA, The Netherlands2 Science Directorate, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK 3 Botanical Gardens, Graduate School of Science, The University of Tokyo, 3-7-1 Hakusan, Bunkyo-ku, Tokyo, 112-0001, Japan4 Tsukuba Botanical Garden, National Science Museum, 4-1-1 Amakubo, Tsukuba, 305-0005, Japan 5 Department of Biological Sciences, Faculty of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan 6 Bio-Next Project, Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Yamate Build. #3, 5-1, Higashiyama, Myodaiji, Okazaki, Aichi, 444-8787, Japan Corresponding author: Izai A. B. Sabino Kikuchi ([email protected]) Academic editor: M. Simo-Droissart | Received 26 September 2019 | Accepted 18 December 2019 | Published 19 February 2020 Citation: Sabino Kikuchi IAB, Keßler PJA, Schuiteman A, Murata J, Ohi-Toma T, Yukawa T, Tsukaya H (2020) Molecular phylogenetic study of the tribe Tropidieae (Orchidaceae, Epidendroideae) with taxonomic and evolutionary implications. PhytoKeys 140: 11–22. https://doi.org/10.3897/phytokeys.140.46842 Abstract The orchid tribe Tropidieae comprises three genera,Tropidia , Corymborkis and Kalimantanorchis. -
(Poaceae) and Characterization
EVOLUTION AND DEVELOPMENT OF VEGETATIVE ARCHITECTURE: BROAD SCALE PATTERNS OF BRANCHING ACROSS THE GRASS FAMILY (POACEAE) AND CHARACTERIZATION OF ARCHITECTURAL DEVELOPMENT IN SETARIA VIRIDIS L. P. BEAUV. By MICHAEL P. MALAHY Bachelor of Science in Biology University of Central Oklahoma Edmond, Oklahoma 2006 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE July, 2012 EVOLUTION AND DEVELOPMENT OF VEGETATIVE ARCHITECTURE: BROAD SCALE PATTERNS OF BRANCHING ACROSS THE GRASS FAMILY (POACEAE) AND CHARACTERIZATION OF ARCHITECTURAL DEVELOPMENT IN WEEDY GREEN MILLET ( SETARIA VIRIDIS L. P. BEAUV.) Thesis Approved: Dr. Andrew Doust Thesis Adviser Dr. Mark Fishbein Dr. Linda Watson Dr. Sheryl A. Tucker Dean of the Graduate College I TABLE OF CONTENTS Chapter Page I. Evolutionary survey of vegetative branching across the grass family (poaceae) ... 1 Introduction ................................................................................................................... 1 Plant Architecture ........................................................................................................ 2 Vascular Plant Morphology ......................................................................................... 3 Grass Morphology ....................................................................................................... 4 Methods .......................................................................................................................