Changes in Morphology During the Development of the Horn and Hump of the Chinese Cavefish Sinocyclocheillus Furcodorsalis
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Otolith Description and Age-And-Growth of Kurtus Gulliveri from Northern Australia
Journal of Fish Biology (2004) 65, 354–362 doi:10.1111/j.1095-8649.2004.00454.x,availableonlineathttp://www.blackwell-synergy.com Otolith description and age-and-growth of Kurtus gulliveri from northern Australia T. M. BERRA* AND D. D. ADAY Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Mansfield, OH 44906, U.S.A. (Received 15 July 2003, Accepted 22 April 2004) The sagitta of Kurtus gulliveri was ovate, moderately thick with the following attributes: lateral surface convex, mesial surface flat; dorsal margin sinuate, posterior margin rounded ventrally, ventral margin rounded and irregular; sulcus divided into ostium and cauda by constriction of dorsal and ventral margins, heterosulcoid, colliculum heteromorph; dorsal depression large and distinct, ventral groove close to margin in larger otoliths; rostrum broad and antirostrum small, separated by wide, shallow excisural notch. Otolith size was moderate, average 4Á6% standard length (LS), typical for a perciform. Annuli on 78 whole sagittae were read, and 15% of these were transversely sectioned for verification of the annuli. Males ranged from 94 to 235 mm LS and females from 95 to 284 mm LS. There was little difference in size distribution of the sample between the sexes, perhaps due to a 6 month spawning season over which young were continually added to the population. Some sexual dimorphism was noted, however, as age 2 year females were significantly larger than males of the same age. The largest fish aged was a 284 mm LS, 3 year-old female, and the oldest age reached was 4 years by two males. It appears likely that most spawning females are 2 years old, but some larger 1 year old fish may attain sexual maturity. -
BREAK-OUT SESSIONS at a GLANCE THURSDAY, 24 JULY, Afternoon Sessions
2008 Joint Meeting (JMIH), Montreal, Canada BREAK-OUT SESSIONS AT A GLANCE THURSDAY, 24 JULY, Afternoon Sessions ROOM Salon Drummond West & Center Salons A&B Salons 6&7 SESSION/ Fish Ecology I Herp Behavior Fish Morphology & Histology I SYMPOSIUM MODERATOR J Knouft M Whiting M Dean 1:30 PM M Whiting M Dean Can She-male Flat Lizards (Platysaurus broadleyi) use Micro-mechanics and material properties of the Multiple Signals to Deceive Male Rivals? tessellated skeleton of cartilaginous fishes 1:45 PM J Webb M Paulissen K Conway - GDM The interopercular-preopercular articulation: a novel Is prey detection mediated by the widened lateral line Variation In Spatial Learning Within And Between Two feature suggesting a close relationship between canal system in the Lake Malawi cichlid, Aulonocara Species Of North American Skinks Psilorhynchus and labeonin cyprinids (Ostariophysi: hansbaenchi? Cypriniformes) 2:00 PM I Dolinsek M Venesky D Adriaens Homing And Straying Following Experimental Effects of Batrachochytrium dendrobatidis infections on Biting for Blood: A Novel Jaw Mechanism in Translocation Of PIT Tagged Fishes larval foraging performance Haematophagous Candirú Catfish (Vandellia sp.) 2:15 PM Z Benzaken K Summers J Bagley - GDM Taxonomy, population genetics, and body shape The tale of the two shoals: How individual experience A Key Ecological Trait Drives the Evolution of Monogamy variation of Alabama spotted bass Micropterus influences shoal behaviour in a Peruvian Poison Frog punctulatus henshalli 2:30 PM M Pyron K Parris L Chapman -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Evolution of the Nitric Oxide Synthase Family in Vertebrates and Novel
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.14.448362; this version posted June 14, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Evolution of the nitric oxide synthase family in vertebrates 2 and novel insights in gill development 3 4 Giovanni Annona1, Iori Sato2, Juan Pascual-Anaya3,†, Ingo Braasch4, Randal Voss5, 5 Jan Stundl6,7,8, Vladimir Soukup6, Shigeru Kuratani2,3, 6 John H. Postlethwait9, Salvatore D’Aniello1,* 7 8 1 Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, 80121, 9 Napoli, Italy 10 2 Laboratory for Evolutionary Morphology, RIKEN Center for Biosystems Dynamics 11 Research (BDR), Kobe, 650-0047, Japan 12 3 Evolutionary Morphology Laboratory, RIKEN Cluster for Pioneering Research (CPR), 2-2- 13 3 Minatojima-minami, Chuo-ku, Kobe, Hyogo, 650-0047, Japan 14 4 Department of Integrative Biology and Program in Ecology, Evolution & Behavior (EEB), 15 Michigan State University, East Lansing, MI 48824, USA 16 5 Department of Neuroscience, Spinal Cord and Brain Injury Research Center, and 17 Ambystoma Genetic Stock Center, University of Kentucky, Lexington, Kentucky, USA 18 6 Department of Zoology, Faculty of Science, Charles University in Prague, Prague, Czech 19 Republic 20 7 Division of Biology and Biological Engineering, California Institute of Technology, 21 Pasadena, CA, USA 22 8 South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, 23 Faculty of Fisheries and Protection of Waters, University of South Bohemia in Ceske 24 Budejovice, Vodnany, Czech Republic 25 9 Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA 26 † Present address: Department of Animal Biology, Faculty of Sciences, University of 27 Málaga; and Andalusian Centre for Nanomedicine and Biotechnology (BIONAND), 28 Málaga, Spain 29 30 * Correspondence: [email protected] 31 32 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.14.448362; this version posted June 14, 2021. -
Genetic Variants Vetted by Natural Selection
GENETICS | THE 2015 GSA HONORS AND AWARDS “Wrecks of Ancient Life”: Genetic Variants Vetted by Natural Selection John H. Postlethwait Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403 ORCID ID: 0000-0002-5476-2137 (J.H.P.) HE Genetics Society of America’s George W. Beadle Award honors individuals who have made outstanding contributions T to the community of genetics researchers and who exemplify the qualities of its namesake as a respected academic, administrator, and public servant. The 2015 recipient is John Postlethwait. He has made groundbreaking contributions in developing the zebrafish as a molecular genetic model and in understanding the evolution of new gene functions in vertebrates. He built the first zebrafish genetic map and showed that its genome, along with that of distantly related teleost fish, had been duplicated. Postlethwait played an integral role in the zebrafish genome-sequencing project and elucidated the genomic organization of several fish species. Postlethwait is also honored for his active involvement with the zebrafish community, advocacy for zebrafish as a model system, and commitment to driving the field forward. Genetics blossomed as a science spurred by wise selections important genetic variants that can shed light on the mech- of compliant organisms. One hundred years ago, the first anisms of development and physiology in the wild (Albertson paper in the first issue of GENETICS used genetic maps and et al. 2009). Phenotypes exhibited by these “wrecks of ancient chromosome anomalies in Drosophila melanogaster to support life” would be disease states in related species, but in par- the chromosomal theory of inheritance (Bridges 1916). -
Early Life History of the Nurseryfish, Kurtus Gulliveri (Perciformes
Copeia, 2003(2), pp. 384±390 Early Life History of the Nursery®sh, Kurtus gulliveri (Perciformes: Kurtidae), from Northern Australia TIM M. BERRA AND FRANCISCO J. NEIRA Eggs and larvae of nursery®sh, Kurtus gulliveri, one of two known species of Kurtidae, are described and illustrated for the ®rst time using material collected in two rivers of Australia's Northern Territory. Nursery®sh are unique among ®shes in that males carry a cluster of fertilized eggs on a bony hook projecting from their foreheads. No brooding males were captured during this study, although one partial egg cluster was found adjacent to a male caught in a gill net. Three clusters found attached to gill nets without associated males had approximately 900±1300, slightly elliptical, 2.1±2.5 mm diameter, eggs, each with multiple oil droplets and a single, relatively thick chorionic ®lamentous strand at opposite poles. Larvae are pelagic and hatch at approximately 5-mm body length (BL) at the ¯exion stage possessing a large yolk sac, forming dorsal, caudal, and anal ®ns, and little pigment. Notochord ¯exion and yolk-sac resorption are complete by 6.9 mm. Post±yolk-sac larvae resem- ble adults in having a hatchet-shaped body that is almost transparent in life, includ- ing a large head with relatively small eyes, preopercular spines and a prominent, in¯ated gas bladder. Larval length data obtained fortnightly from August to Novem- ber 2001 suggests that breeding occurs during northern Australia's dry season (May to November) and that larvae leave the pelagic environment at about 25 mm. -
Actinopterygii, Cyprinidae) En La Cuenca Del Mediterráneo Occidental
UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE CIENCIAS BIOLÓGICAS TESIS DOCTORAL Filogenia, filogeografía y evolución de Luciobarbus Heckel, 1843 (Actinopterygii, Cyprinidae) en la cuenca del Mediterráneo occidental MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR Miriam Casal López Director Ignacio Doadrio Villarejo Madrid, 2017 © Miriam Casal López, 2017 UNIVERSIDAD COMPLUTENSE DE MADRID Facultad de Ciencias Biológicas Departamento de Zoología y Antropología física Phylogeny, phylogeography and evolution of Luciobarbus Heckel, 1843, in the western Mediterranean Memoria presentada para optar al grado de Doctor por Miriam Casal López Bajo la dirección del Doctor Ignacio Doadrio Villarejo Madrid - Febrero 2017 Ignacio Doadrio Villarejo, Científico Titular del Museo Nacional de Ciencias Naturales – CSIC CERTIFICAN: Luciobarbus Que la presente memoria titulada ”Phylogeny, phylogeography and evolution of Heckel, 1843, in the western Mediterranean” que para optar al grado de Doctor presenta Miriam Casal López, ha sido realizada bajo mi dirección en el Departamento de Biodiversidad y Biología Evolutiva del Museo Nacional de Ciencias Naturales – CSIC (Madrid). Esta memoria está además adscrita académicamente al Departamento de Zoología y Antropología Física de la Facultad de Ciencias Biológicas de la Universidad Complutense de Madrid. Considerando que representa trabajo suficiente para constituir una Tesis Doctoral, autorizamos su presentación. Y para que así conste, firmamos el presente certificado, El director: Ignacio Doadrio Villarejo El doctorando: Miriam Casal López En Madrid, a XX de Febrero de 2017 El trabajo de esta Tesis Doctoral ha podido llevarse a cabo con la financiación de los proyectos del Ministerio de Ciencia e Innovación. Además, Miriam Casal López ha contado con una beca del Ministerio de Ciencia e Innovación. -
The Genome 10K Project: a Way Forward
The Genome 10K Project: A Way Forward Klaus-Peter Koepfli,1 Benedict Paten,2 the Genome 10K Community of Scientists,Ã and Stephen J. O’Brien1,3 1Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russian Federation; email: [email protected] 2Department of Biomolecular Engineering, University of California, Santa Cruz, California 95064 3Oceanographic Center, Nova Southeastern University, Fort Lauderdale, Florida 33004 Annu. Rev. Anim. Biosci. 2015. 3:57–111 Keywords The Annual Review of Animal Biosciences is online mammal, amphibian, reptile, bird, fish, genome at animal.annualreviews.org This article’sdoi: Abstract 10.1146/annurev-animal-090414-014900 The Genome 10K Project was established in 2009 by a consortium of Copyright © 2015 by Annual Reviews. biologists and genome scientists determined to facilitate the sequencing All rights reserved and analysis of the complete genomes of10,000vertebratespecies.Since Access provided by Rockefeller University on 01/10/18. For personal use only. ÃContributing authors and affiliations are listed then the number of selected and initiated species has risen from ∼26 Annu. Rev. Anim. Biosci. 2015.3:57-111. Downloaded from www.annualreviews.org at the end of the article. An unabridged list of G10KCOS is available at the Genome 10K website: to 277 sequenced or ongoing with funding, an approximately tenfold http://genome10k.org. increase in five years. Here we summarize the advances and commit- ments that have occurred by mid-2014 and outline the achievements and present challenges of reaching the 10,000-species goal. We summarize the status of known vertebrate genome projects, recommend standards for pronouncing a genome as sequenced or completed, and provide our present and futurevision of the landscape of Genome 10K. -
Construction of a Chromosome-Level Genome Assembly for Genome-Wide
Yin et al. Zool. Res. 2021, 42(3): 262−266 https://doi.org/10.24272/j.issn.2095-8137.2020.321 Letter to the editor Open Access Construction of a chromosome-level genome assembly for genome-wide identification of growth-related quantitative trait loci in Sinocyclocheilus grahami (Cypriniformes, Cyprinidae) The Dianchi golden-line barbel, Sinocyclocheilus grahami (Zhao et al., 2013). However, the S. grahami population has (Regan, 1904), is one of the “Four Famous Fishes” of Yunnan declined sharply since the 1960s due to habitat damage, Province, China. Given its economic value, this species has water pollution, and alien species invasion (Yang et al., 2007). been artificially bred successfully since 2007, with a nationally As such, it was listed as an animal of Second-Class National selected breed (“S. grahami, Bayou No. 1”) certified in 2018. Protection in 1989, and as an endangered fish in the “China For the future utilization of this species, its growth rate, Red Book of Endangered Animals” in 1998 (Le & Chen, 1998). disease resistance, and wild adaptability need to be improved, Since 2007, our team has successfully achieved the artificial which could be achieved with the help of molecular marker- breeding of S. grahami (Yang et al., 2007), which has not only assisted selection (MAS). In the current study, we constructed helped in avoiding its wild extinction, but also opened a new the first chromosome-level genome of S. grahami, assembled era for its utilization. Moreover, after four generations of 48 pseudo-chromosomes, and obtained a genome size of artificial selection, a new national breed (“S. -
Kurtus Gulliveri Castelnau, 1878) According to the Lunar Phase in Maro River, Merauke 1Modesta R
Growth patterns, sex ratio and size structure of nurseryfish (Kurtus gulliveri Castelnau, 1878) according to the lunar phase in Maro River, Merauke 1Modesta R. Maturbongs, 1Sisca Elviana, 2Maria M. N. N. Lesik, 3Chair Rani, 3Andi I. Burhanuddin 1 Department of Water Resource Management, Faculty of Agriculture, Musamus University, Papua, Indonesia; 2 Department of Animal Husbandry, Faculty of Agriculture, Musamus University, Papua, Indonesia; 3 Department of Marine Sciences, Faculty of Marine and Fisheries Sciences, Hasanuddin University, South Sulawesi, Indonesia. Corresponding author: C. Rani, [email protected] Abstract. This study was aimed to analyze growth patterns, sex ratios, gonadal maturity levels, size structures and factor conditions of nurseryfish (Kurtus gulliveri) which were caught at different lunar phases in the Maro River, Merauke. Fish samples were collected every month, using a gillnet, from April to September 2018. During the study, 72 individuals, consisting of 31 female and 41 male were collected. The sex ratio of fish in the lunar phase is the same, namely 1:1. Female gonads dominate maturity levels I and IV at each lunar phase, while males dominate the maturity levels of gonads II, III and V in the new moon phase. Male and female at different lunar phases generally have negative allometric growth, except female nursery fish caught in the full-phase, which have a positive allometric growth pattern. Full-weight equation of male and female K. gulliveri in the full-phase is log W=- 4,613+2,7821 log L and log W=-5,9099+3,315 log L, while the length-weight equation for male and female K. -
The Sinocyclocheilus Cavefish Genome Provides Insights Into Cave
Yang et al. BMC Biology (2016) 14:1 DOI 10.1186/s12915-015-0223-4 RESEARCH ARTICLE Open Access The Sinocyclocheilus cavefish genome provides insights into cave adaptation Junxing Yang1*†, Xiaoli Chen2†, Jie Bai2,3,4†, Dongming Fang2,6†, Ying Qiu2,3,5†, Wansheng Jiang1†, Hui Yuan2, Chao Bian2,3, Jiang Lu2,7, Shiyang He2,7, Xiaofu Pan1, Yaolei Zhang2,8, Xiaoai Wang1, Xinxin You2,3, Yongsi Wang2, Ying Sun2,5, Danqing Mao2, Yong Liu2, Guangyi Fan2, He Zhang2, Xiaoyong Chen1, Xinhui Zhang2,3, Lanping Zheng1, Jintu Wang2, Le Cheng5,9, Jieming Chen2,3, Zhiqiang Ruan2,3, Jia Li2,3,7, Hui Yu2,3,7, Chao Peng2,3, Xingyu Ma10,11, Junmin Xu10,11, You He12, Zhengfeng Xu13, Pao Xu14, Jian Wang2,15, Huanming Yang2,15, Jun Wang2,16, Tony Whitten4*, Xun Xu2* and Qiong Shi2,3,10,11* Abstract Background: An emerging cavefish model, the cyprinid genus Sinocyclocheilus, is endemic to the massive southwestern karst area adjacent to the Qinghai-Tibetan Plateau of China. In order to understand whether orogeny influenced the evolution of these species, and how genomes change under isolation, especially in subterranean habitats, we performed whole-genome sequencing and comparative analyses of three species in this genus, S. grahami, S. rhinocerous and S. anshuiensis. These species are surface-dwelling, semi-cave-dwelling and cave-restricted, respectively. Results: The assembled genome sizes of S. grahami, S. rhinocerous and S. anshuiensis are 1.75 Gb, 1.73 Gb and 1.68 Gb, respectively. Divergence time and population history analyses of these species reveal that their speciation and population dynamics are correlated with the different stages of uplifting of the Qinghai-Tibetan Plateau. -
Molecular Phylogenetic Analysis of the AIG Family in Vertebrates
G C A T T A C G G C A T genes Communication Molecular Phylogenetic Analysis of the AIG Family in Vertebrates Yuqi Huang 1,†, Minghao Sun 2,† , Lenan Zhuang 2,* and Jin He 1,* 1 Department of Animal Science, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] 2 Department of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] * Correspondence: [email protected] (L.Z.); [email protected] (J.H.); Tel.: +86-15-8361-28207 (L.Z.); +86-17-6818-74822 (J.H.) † These authors contributed equally to this work. Abstract: Androgen-inducible genes (AIGs), which can be regulated by androgen level, constitute a group of genes characterized by the presence of the AIG/FAR-17a domain in its protein sequence. Previous studies on AIGs demonstrated that one member of the gene family, AIG1, is involved in many biological processes in cancer cell lines and that ADTRP is associated with cardiovascular diseases. It has been shown that the numbers of AIG paralogs in humans, mice, and zebrafish are 2, 2, and 3, respectively, indicating possible gene duplication events during vertebrate evolution. Therefore, classifying subgroups of AIGs and identifying the homologs of each AIG member are important to characterize this novel gene family further. In this study, vertebrate AIGs were phyloge- netically grouped into three major clades, ADTRP, AIG1, and AIG-L, with AIG-L also evident in an outgroup consisting of invertebrsate species. In this case, AIG-L, as the ancestral AIG, gave rise to ADTRP and AIG1 after two rounds of whole-genome duplications during vertebrate evolution.