bioRxiv preprint doi: https://doi.org/10.1101/845990; this version posted November 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Type of the Paper (Article) 2 Developmental transcriptomic analysis of the 3 cave-dwelling crustacean, Asellus aquaticus 4 Joshua B. Gross 2**, Dennis A. Sun 3** , Brian M. Carlson 4, Sivan Brodo-Abo 1 , and Meredith E. 5 Protas 1* 6 1 Department of Natural Sciences and Mathematics, Dominican University of California, San Rafael, 7 California 94901 8 2 Department of Biological Sciences, University of Cincinnati, Cincinnati, Ohio 45221 9 3 Department of Molecular and Cellular Biology, University of California at Berkeley, Berkeley, California 10 94720 11 4 Department of Biology, College of Wooster, Wooster, Ohio 44691 12 13 14 ** equal contribution 15 * Correspondence:
[email protected] 16 Received: date; Accepted: date; Published: date 17 Abstract: Cave animals are a fascinating group of species often demonstrating characteristics including 18 reduced eyes and pigmentation, metabolic efficiency, and enhanced sensory systems. Asellus aquaticus, an 19 isopod crustacean, is an emerging model for cave biology. Cave and surface forms of this species differ in 20 many characteristics, including eye size, pigmentation and antennal length. Existing resources for this species 21 include a linkage map, mapped regions responsible for eye and pigmentation traits, sequenced adult 22 transcriptomes, and comparative embryological descriptions of the surface and cave forms. Our ultimate goal 23 is to identify genes and mutations responsible for the differences between the cave and surface forms.