The Evolutionary Consequences of Oxygenic Photosynthesis: a Body Size Perspective
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Understanding the Sexual Recruitment of One of the Oldest and Largest Organisms on Earth, the Seagrass Posidonia Oceanica
RESEARCH ARTICLE Understanding the sexual recruitment of one of the oldest and largest organisms on Earth, the seagrass Posidonia oceanica 1☯ 2☯ 1☯ Laura Guerrero-MeseguerID *, Carlos Sanz-LaÂzaro , Arnaldo MarõÂn 1 Departamento de EcologõÂa e HidrologõÂa. Facultad de BiologõÂa, Universidad de Murcia, Campus de Espinardo, Murcia, Spain, 2 Departamento de EcologõÂa, PabelloÂn 13, Universidad de Alicante, Alicante, Spain ☯ These authors contributed equally to this work. * [email protected] a1111111111 Abstract a1111111111 a1111111111 The seagrass Posidonia oceanica is considered one of the oldest and largest living organ- a1111111111 isms on Earth. Notwithstanding, given the difficulty of monitoring its fruits and seeds in the a1111111111 field, the development of P. oceanica during its sexual recruitment is not completely under- stood. We studied the stages of development of P. oceanica seeds from their dispersion in the fruit interior to their settlement in sediment through histological, ultrastructural and meso- cosm experiments. P. oceanica sexual recruitment can be divided into three main stages OPEN ACCESS that focus on maximising photosynthesis and anchoring the seedlings to the sediment. In Citation: Guerrero-Meseguer L, Sanz-LaÂzaro C, the first stage (fruit dispersion), seeds perform photosynthesis while being transported MarõÂn A (2018) Understanding the sexual recruitment of one of the oldest and largest inside the fruit along the sea surface. In the second stage (seed adhesion), seeds develop organisms on Earth, the seagrass Posidonia adhesive microscopic hairs that cover the primary and secondary roots and favour seed oceanica. PLoS ONE 13(11): e0207345. https://doi. adhesion to the substrate. In the last stage (seedling anchorage), roots attach the seedlings org/10.1371/journal.pone.0207345 to the substrate by orienting them towards the direction of light to maximise photosynthesis. -
Inferring Microbial Interaction Networks Based on Consensus Similarity Network Fusion
SCIENCE CHINA Life Sciences THEMATIC ISSUE: Computational life sciences November 2014 Vol.57 No.11: 1115–1120 • RESEARCH PAPER • doi: 10.1007/s11427-014-4735-x Inferring microbial interaction networks based on consensus similarity network fusion JIANG XingPeng1,2 & HU XiaoHua2* 1College of Computing and Informatics, Drexel University, Philadelphia, PA 19104, USA; 2School of Computer, Central China Normal University, Wuhan 430079, China Received May 15, 2014; accepted July 21, 2014; published online October 17, 2014 With the rapid accumulation of high-throughput metagenomic sequencing data, it is possible to infer microbial species rela- tions in a microbial community systematically. In recent years, some approaches have been proposed for identifying microbial interaction network. These methods often focus on one dataset without considering the advantage of data integration. In this study, we propose to use a similarity network fusion (SNF) method to infer microbial relations. The SNF efficiently integrates the similarities of species derived from different datasets by a cross-network diffusion process. We also introduce consensus k-nearest neighborhood (Ck-NN) method instead of k-NN in the original SNF (we call the approach CSNF). The final network represents the augmented species relationships with aggregated evidence from various datasets, taking advantage of comple- mentarity in the data. We apply the method on genus profiles derived from three microbiome datasets and we find that CSNF can discover the modular structure of microbial interaction network which cannot be identified by analyzing a single dataset. species interaction, metagenome, diffusion process, biological network, modularity Citation: Jiang XP, Hu XH. Inferring microbial interaction networks based on consensus similarity network fusion. -
Chapter 2 Paleozoic Stratigraphy of the Grand Canyon
CHAPTER 2 PALEOZOIC STRATIGRAPHY OF THE GRAND CANYON PAIGE KERCHER INTRODUCTION The Paleozoic Era of the Phanerozoic Eon is defined as the time between 542 and 251 million years before the present (ICS 2010). The Paleozoic Era began with the evolution of most major animal phyla present today, sparked by the novel adaptation of skeletal hard parts. Organisms continued to diversify throughout the Paleozoic into increasingly adaptive and complex life forms, including the first vertebrates, terrestrial plants and animals, forests and seed plants, reptiles, and flying insects. Vast coal swamps covered much of mid- to low-latitude continental environments in the late Paleozoic as the supercontinent Pangaea began to amalgamate. The hardiest taxa survived the multiple global glaciations and mass extinctions that have come to define major time boundaries of this era. Paleozoic North America existed primarily at mid to low latitudes and experienced multiple major orogenies and continental collisions. For much of the Paleozoic, North America’s southwestern margin ran through Nevada and Arizona – California did not yet exist (Appendix B). The flat-lying Paleozoic rocks of the Grand Canyon, though incomplete, form a record of a continental margin repeatedly inundated and vacated by shallow seas (Appendix A). IMPORTANT STRATIGRAPHIC PRINCIPLES AND CONCEPTS • Principle of Original Horizontality – In most cases, depositional processes produce flat-lying sedimentary layers. Notable exceptions include blanketing ash sheets, and cross-stratification developed on sloped surfaces. • Principle of Superposition – In an undisturbed sequence, older strata lie below younger strata; a package of sedimentary layers youngs upward. • Principle of Lateral Continuity – A layer of sediment extends laterally in all directions until it naturally pinches out or abuts the walls of its confining basin. -
Bioaugmentation of Chlorinated Solvents
BIOAUGMENTATION FOR REMEDIATION OF CHLORINATED SOLVENTS: TECHNOLOGY DEVELOPMENT, STATUS, AND RESEARCH NEEDS October 2005 GeoSyntec Consultants TABLE OF CONTENTS LIST OF TABLES ...........................................................................................................................................III LIST OF FIGURES .........................................................................................................................................III ACRONYMNS AND ABBREVIATIONS........................................................................................................V FOREWORD...................................................................................................................................................VII EXECUTIVE SUMMARY ............................................................................................................................... IX 1. INTRODUCTION ..........................................................................................................................................1 2. EARLY DEVELOPMENT OF BIOAUGMENTATION.............................................................................5 3. RECENT PROGRESS IN CHLORINATED SOLVENT BIOREMEDIATION .....................................13 4. DEHALORESPIRATION: THE KEY PROCESS UNDERLYING CURRENT BIOAUGMENTATION PRACTICES..............................................................................................................................................................19 4.1 THE UBIQUITY CONCEPT REVISITED -
Energetics of Life on the Deep Seafloor
Energetics of life on the deep seafloor Craig R. McClaina,1, Andrew P. Allenb, Derek P. Tittensorc,d, and Michael A. Rexe aNational Evolutionary Synthesis Center, Durham, NC 27705-4667; bDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia; cUnited Nations Environment Programme World Conservation Monitoring Centre, Cambridge CB3 0DL, United Kingdom; dMicrosoft Research Computational Science Laboratory, Cambridge CB3 0FB, United Kingdom; and eDepartment of Biology, University of Massachusetts, Boston, MA 02125-3393 Edited* by James H. Brown, University of New Mexico, Albuquerque, NM, and approved August 3, 2012 (received for review May 26, 2012) With frigid temperatures and virtually no in situ productivity, the vary with depth (13, 14), which is inversely related to POC flux deep oceans, Earth’s largest ecosystem, are especially energy-de- (16, 17). The influence of energy availability on individual growth prived systems. Our knowledge of the effects of this energy lim- rates and lifespans is unknown. At the community level, biomass itation on all levels of biological organization is very incomplete. and abundance generally decline with depth. Direct tests for the fl Here, we use the Metabolic Theory of Ecology to examine the in uences of POC and temperature on these community attrib- relative roles of carbon flux and temperature in influencing met- utes are rare, but they suggest only weak effects for temperature (16, 18). Although broad-scale patterns of deep-sea biodiversity abolic rate, growth rate, lifespan, body size, abundance, biomass, fi and biodiversity for life on the deep seafloor. We show that the are well-established and presumably linked to POC, speci c tests of this relationship remain limited (reviewed in ref. -
Understanding the Interaction Between Anabaena Sp. and a Heterocyst-Specific Epibiont
Understanding the interaction between Anabaena sp. and a heterocyst-specific epibiont Iglika V. Pavlova MBL Microbial Diversity course 2005 Abstract Anabaena sp. and an associated heterocyst-specific epibiontic bacterium were isolated from School Street Marsh in Woods Hole, MA in 1997 during the Microbial Diversity course. A two-member culture of the cyanobacterium and the epibiont have been maintained at WHOI by John Waterbury. Anabaena species with similar heterocyst-specific epibionts have also been isolated from other locations (7, 8, 9). Successful culture of the epibiont separately from the School Street Marsh cyanobacterium was achieved on two occasions (1, 10), but the isolates were not preserved. The epibiont was identified to be an α-proteobacterium within the Rhizobiaceae group (10). The close and specific association between the cyanobacterium and the epibiont strongly suggests there might be a physiological benefit or benefits to the cyanobacterium, the epibiont, or to both partners. This study was designed to understand the potential benefits of the interaction for the epibiontic bacterium. Several approaches were used to isolate the epibiont in pure culture, unsuccessfully. This report describes the rationale for undertaking the project and the approaches used to isolate the epibiont, in the hopes that this will be useful information for the future isolation of an axenic epibiont culture. Rationale Cyanobacterial associations with heterotrophic bacteria from environmental isolates have been described before and have been implicated in increasing the growth of the cyanobacterium (5, 6, 7). Benefit to the cyanobacterium may be derived from a range of associations, including the presence of heterotrophic bacteria in the culture medium, attraction of such bacteria to cyanobacterial secretions (either along the whole filament, or secretions stemming from the heterocyst in filamentous bacteria), or the attachment of the bacterium to the cyanobacterium outer surface (5, 6, 7, 9). -
The Anthropocene Biosphere
ANR0010.1177/2053019615591020The Anthropocene ReviewWilliams et al. 591020research-article2015 Review The Anthropocene Review 1 –24 The Anthropocene biosphere © The Author(s) 2015 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav DOI: 10.1177/2053019615591020 anr.sagepub.com Mark Williams,1 Jan Zalasiewicz,1 PK Haff,2 Christian Schwägerl,3 Anthony D Barnosky4,5,6 and Erle C Ellis7 Abstract The geological record preserves evidence for two fundamental stages in the evolution of Earth’s biosphere, a microbial stage from ~3.5 to 0.65 Ga, and a metazoan stage evident by c. 650 Ma. We suggest that the modern biosphere differs significantly from these previous stages and shows early signs of a new, third stage of biosphere evolution characterised by: (1) global homogenisation of flora and fauna; (2) a single species (Homo sapiens) commandeering 25–40% of net primary production and also mining fossil net primary production (fossil fuels) to break through the photosynthetic energy barrier; (3) human-directed evolution of other species; and (4) increasing interaction of the biosphere with the technosphere (the global emergent system that includes humans, technological artefacts, and associated social and technological networks). These unique features of today’s biosphere may herald a new era in the planet’s history that could persist over geological timescales. Keywords biosphere, evolution, global ecosystem, neobiotic species, planetary state, production and consumption, technosphere Introduction Humans transport organisms around the globe (McNeely, 2001 and references therein), con- struct unique agricultural and urban ‘anthromes’ for organisms to live in (e.g. Ellis, 2013; Ellis et al., 2012, 2013a, 2013b), and have concentrated biomass into a particular set of plants and animals (e.g. -
Save Hi-Res Pdf (0.76
Paleobiology, 45(2), 2019, pp. 221–234 DOI: 10.1017/pab.2019.4 Dissecting the paleocontinental and paleoenvironmental dynamics of the great Ordovician biodiversification Franziska Franeck and Lee Hsiang Liow Abstract.—The Ordovician was a time of drastic biological and geological change. Previous work has suggested that there was a dramatic increase in global diversity during this time, but also has indicated that regional dynamics and dynamics in specific environments might have been different. Here, we contrast two paleocontinents that have different geological histories through the Ordovician, namely Laurentia and Baltica. The first was situated close to the equator throughout the whole Ordovician, while the latter has traversed tens of latitudes during the same time. We predict that Baltica, which was under long-term environmental change, would show greater average and interval-to-interval origination and extinction rates than Laurentia. In addition, we are interested in the role of the environment in which taxa originated, specifically, the patterns of onshore–offshore dynamics of diversification, where onshore and offshore areas represent high-energy and low-energy environments, respectively. Here, we predict that high-energy environments might be more conducive for originations. Our new analyses show that the global Ordovician spike in genus richness from the Dapingian to the Darriwilian Stage resulted from a very high origination rate at the Dapingian/Darriwilian boundary, while the extinction rate remained low. We found substantial interval-to-interval variation in the origin- ation and extinction rates in Baltica and Laurentia, but the probabilities of origination and extinction are somewhat higher in Baltica than Laurentia. Onshore and offshore areas have largely indistinguishable origination and extinction rates, in contradiction to our predictions. -
Escherichia Coli
log bio y: O ro p c e i n M A l c Clinical Microbiology: Open a c c i e n s i l s Delmas et al., Clin Microbiol 2015, 4:2 C Access ISSN: 2327-5073 DOI:10.4172/2327-5073.1000195 Commentary Open Access Escherichia coli: The Good, the Bad and the Ugly Julien Delmas*, Guillaume Dalmasso and Richard Bonnet Microbes, Intestine, Inflammation and Host Susceptibility, INSERM U1071, INRA USC2018, Université Clermont Auvergne, Clermont-Ferrand, France *Corresponding author: Julien Delmas, Microbes, Intestine, Inflammation and Host Susceptibility, INSERM U1071, INRA USC2018, Université Clermont Auvergne, Clermont-Ferrand, France, Tel: +334731779; E-mail; [email protected] Received date: March 11, 2015, Accepted date: April 21, 2015, Published date: Aptil 28, 2015 Copyright: © 2015 Delmas J, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract The species Escherichia coli comprises non-pathogenic commensal strains that form part of the normal flora of humans and virulent strains responsible for acute infections inside and outside the intestine. In addition to these pathotypes, various strains of E. coli are suspected of promoting the development or exacerbation of chronic diseases of the intestine such as Crohn’s disease and colorectal cancer. Description replicate within both intestinal epithelial cells and macrophages. These properties were used to define a new pathotype of E. coli designated Escherichia coli is a non-sporeforming, facultatively anaerobic adherent-invasive E. -
Stouthamer1973
Antonie van Leeuwenhoek 39 (1973) 545-565 545 A theoretical study on the amount of ATP required for synthesis of microbial cell material A. H. STOUTHAMER Biological Laboratory, Free University, de Boelelaan 1087, Amsterdam, the Netherlands STOUTHAMER, A.H. 1973. A theoretical study on the amount of ATP required for synthesis of microbial cell material. Antonie van Leeuwenhoek 39: 545-565. The amount of ATP required for the formation of microbial cells growing under various conditions was calculated. It was assumed that the chemical com position of the cell was the same under all these conditions. The analysis of the chemical composition of microbial cells of Morowitz ( 1968) was taken as a base. It was assumed that 4 moles of ATP are required for the incorporation of one mole of amino acid into protein. The amount of ATP required on account of the instability and frequent regeneration of messenger RNA was calculated from data in the literature pertaining to the relative rates of synthesis of the various classes of RNA molecules in the cell. An estimate is given of the amount of ATP required for transport processes. For this purpose it was assumed that 0.5 mole of ATP is necessary for the uptake of 1 g-ion of potassium or ammo nium, and 1 mole of ATP for the uptake of 1 mole of phosphate, amino acid, acetate, malate etc. The results of the calculations show that from preformed monomers (glucose, amino acids and nucleic acid bases) 31.9 g cells can be formed per g-mole of ATP when acetyl-CoA is formed from glucose. -
Demographic History and the Low Genetic Diversity in Dipteryx Alata (Fabaceae) from Brazilian Neotropical Savannas
Heredity (2013) 111, 97–105 & 2013 Macmillan Publishers Limited All rights reserved 0018-067X/13 www.nature.com/hdy ORIGINAL ARTICLE Demographic history and the low genetic diversity in Dipteryx alata (Fabaceae) from Brazilian Neotropical savannas RG Collevatti1, MPC Telles1, JC Nabout2, LJ Chaves3 and TN Soares1 Genetic effects of habitat fragmentation may be undetectable because they are generally a recent event in evolutionary time or because of confounding effects such as historical bottlenecks and historical changes in species’ distribution. To assess the effects of demographic history on the genetic diversity and population structure in the Neotropical tree Dipteryx alata (Fabaceae), we used coalescence analyses coupled with ecological niche modeling to hindcast its distribution over the last 21 000 years. Twenty-five populations (644 individuals) were sampled and all individuals were genotyped using eight microsatellite loci. All populations presented low allelic richness and genetic diversity. The estimated effective population size was small in all populations and gene flow was negligible among most. We also found a significant signal of demographic reduction in most cases. Genetic differentiation among populations was significantly correlated with geographical distance. Allelic richness showed a spatial cline pattern in relation to the species’ paleodistribution 21 kyr BP (thousand years before present), as expected under a range expansion model. Our results show strong evidences that genetic diversity in D. alata is the outcome of the historical changes in species distribution during the late Pleistocene. Because of this historically low effective population size and the low genetic diversity, recent fragmentation of the Cerrado biome may increase population differentiation, causing population decline and compromising long-term persistence. -
New Version of Labour Ministry's Mobile App Offers 33 Services
www.thepeninsula.qa Saturday 18 January 2020 Volume 24 | Number 8140 23 Jumada I - 1441 2 Riyals BUSINESS | 13 SPORT | 18 US-China trade deal Al Ghazali to ease global guides What uncertainty: A Pleasure IMF Chief to win New version of Labour Ministry’s mobile app offers 33 services SANAULLAH ATAULLAH The e-services of THE PENINSULA ‘Amerni’ application The Ministry of Administrative Devel- include housing opment, Labour and Social Affairs has launched the third patch of electronic application follow up, services for ‘Amerni’ application on smart phones in Arabic and English to rent allowance follow save time and efforts of users — indi- up, house purchase- viduals and companies. The third patch includes five new ownership request, services. As of now, the app offers a total and title deed re- of 33 services including 21 services for individuals and 12 services for com- quest, among others. panies, said the Ministry in a post ‘Mobile Application Guide’ published on its website. Android Users, in both languages Arabic The users will now be able to file and English. The user guide is intended complaints against violating manpower to inform the users how to use an recruitment offices. The domestic e-services application - Amerni - for Al Sadd crowned Qatar Cup champions workers can also file formal complaints, the Ministry of Administrative Devel- in addition to other services provided opment, Labour and Social Affairs in Al Sadd’s players and officials pose with the Qatar Cup trophy at Al Sadd Stadium, yesterday. Al Sadd defeated Al Duhail by the Labour Relations Department. Qatar.