Rotifera: Monogononta)
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Systema Naturae∗
Systema Naturae∗ c Alexey B. Shipunov v. 5.802 (June 29, 2008) 7 Regnum Monera [ Bacillus ] /Bacteria Subregnum Bacteria [ 6:8Bacillus ]1 Superphylum Posibacteria [ 6:2Bacillus ] stat.m. Phylum 1. Firmicutes [ 6Bacillus ]2 Classis 1(1). Thermotogae [ 5Thermotoga ] i.s. 2(2). Mollicutes [ 5Mycoplasma ] 3(3). Clostridia [ 5Clostridium ]3 4(4). Bacilli [ 5Bacillus ] 5(5). Symbiobacteres [ 5Symbiobacterium ] Phylum 2. Actinobacteria [ 6Actynomyces ] Classis 1(6). Actinobacteres [ 5Actinomyces ] Phylum 3. Hadobacteria [ 6Deinococcus ] sed.m. Classis 1(7). Hadobacteres [ 5Deinococcus ]4 Superphylum Negibacteria [ 6:2Rhodospirillum ] stat.m. Phylum 4. Chlorobacteria [ 6Chloroflexus ]5 Classis 1(8). Ktedonobacteres [ 5Ktedonobacter ] sed.m. 2(9). Thermomicrobia [ 5Thermomicrobium ] 3(10). Chloroflexi [ 5Chloroflexus ] ∗Only recent taxa. Viruses are not included. Abbreviations and signs: sed.m. (sedis mutabilis); stat.m. (status mutabilis): s., aut i. (superior, aut interior); i.s. (incertae sedis); sed.p. (sedis possibilis); s.str. (sensu stricto); s.l. (sensu lato); incl. (inclusum); excl. (exclusum); \quotes" for environmental groups; * (asterisk) for paraphyletic taxa; / (slash) at margins for major clades (\domains"). 1Incl. \Nanobacteria" i.s. et dubitativa, \OP11 group" i.s. 2Incl. \TM7" i.s., \OP9", \OP10". 3Incl. Dictyoglomi sed.m., Fusobacteria, Thermolithobacteria. 4= Deinococcus{Thermus. 5Incl. Thermobaculum i.s. 1 4(11). Dehalococcoidetes [ 5Dehalococcoides ] 5(12). Anaerolineae [ 5Anaerolinea ]6 Phylum 5. Cyanobacteria [ 6Nostoc ] Classis 1(13). Gloeobacteres [ 5Gloeobacter ] 2(14). Chroobacteres [ 5Chroococcus ]7 3(15). Hormogoneae [ 5Nostoc ] Phylum 6. Bacteroidobacteria [ 6Bacteroides ]8 Classis 1(16). Fibrobacteres [ 5Fibrobacter ] 2(17). Chlorobi [ 5Chlorobium ] 3(18). Salinibacteres [ 5Salinibacter ] 4(19). Bacteroidetes [ 5Bacteroides ]9 Phylum 7. Spirobacteria [ 6Spirochaeta ] Classis 1(20). Spirochaetes [ 5Spirochaeta ] s.l.10 Phylum 8. Planctobacteria [ 6Planctomyces ]11 Classis 1(21). -
Platyhelminthes, Nemertea, and "Aschelminthes" - A
BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. III - Platyhelminthes, Nemertea, and "Aschelminthes" - A. Schmidt-Rhaesa PLATYHELMINTHES, NEMERTEA, AND “ASCHELMINTHES” A. Schmidt-Rhaesa University of Bielefeld, Germany Keywords: Platyhelminthes, Nemertea, Gnathifera, Gnathostomulida, Micrognathozoa, Rotifera, Acanthocephala, Cycliophora, Nemathelminthes, Gastrotricha, Nematoda, Nematomorpha, Priapulida, Kinorhyncha, Loricifera Contents 1. Introduction 2. General Morphology 3. Platyhelminthes, the Flatworms 4. Nemertea (Nemertini), the Ribbon Worms 5. “Aschelminthes” 5.1. Gnathifera 5.1.1. Gnathostomulida 5.1.2. Micrognathozoa (Limnognathia maerski) 5.1.3. Rotifera 5.1.4. Acanthocephala 5.1.5. Cycliophora (Symbion pandora) 5.2. Nemathelminthes 5.2.1. Gastrotricha 5.2.2. Nematoda, the Roundworms 5.2.3. Nematomorpha, the Horsehair Worms 5.2.4. Priapulida 5.2.5. Kinorhyncha 5.2.6. Loricifera Acknowledgements Glossary Bibliography Biographical Sketch Summary UNESCO – EOLSS This chapter provides information on several basal bilaterian groups: flatworms, nemerteans, Gnathifera,SAMPLE and Nemathelminthes. CHAPTERS These include species-rich taxa such as Nematoda and Platyhelminthes, and as taxa with few or even only one species, such as Micrognathozoa (Limnognathia maerski) and Cycliophora (Symbion pandora). All Acanthocephala and subgroups of Platyhelminthes and Nematoda, are parasites that often exhibit complex life cycles. Most of the taxa described are marine, but some have also invaded freshwater or the terrestrial environment. “Aschelminthes” are not a natural group, instead, two taxa have been recognized that were earlier summarized under this name. Gnathifera include taxa with a conspicuous jaw apparatus such as Gnathostomulida, Micrognathozoa, and Rotifera. Although they do not possess a jaw apparatus, Acanthocephala also belong to Gnathifera due to their epidermal structure. ©Encyclopedia of Life Support Systems (EOLSS) BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. -
'Regulation' of Gutless Annelid Ecology by Endosymbiotic Bacteria
MARINE ECOLOGY PROGRESS SERIES Published January 3 Mar. Ecol. Prog. Ser. 'Regulation' of gutless annelid ecology by endosymbiotic bacteria ' Zoological Institute, University of Hamburg, Martin-Luther-King-Platz 3, D-2000 Hamburg 13, Germany Woods Hole Oceanographic Institution. Coastal Research Lab, Woods Hole, Massachusetts 02543, USA ABSTRACT: In studies on invertebrates from sulphidic environments which exploit reduced substances through symbiosis with bacteria, experimental ecological results are often underrepresented. For such studies the gutless oligochaete Inanidrilus leukodermatus is suitable due to its mobility and local abundance. It contains endosymbiotic sulphur-oxidizing bacteria and inhabits the sediment layers around the redox potential discontinuity (RPD) with access to both microoxic and sulphidic conditions. By experimental manipulation of physico-chemical gradients we have shown that the distribution pattern of these worms directly results from active migrations towards the variable position of the RPD, demonstrating the ecological relevance of the concomitant chemical conditions for these worms. Their distributional behaviour probably helps to optimize metabolic conditions for the endosymbiotic bacteria, coupling the needs of symbiont physiology with host behavioural ecology. The substantial bacterial role in the ecophysiology of the symbiosis was confirmed by biochemical analyses (stable isotope ratios for C and N; assays of lipid and amino acid composition) which showed that a dominant portion of the biochemical -
The Biology of Seashores - Image Bank Guide All Images and Text ©2006 Biomedia ASSOCIATES
The Biology of Seashores - Image Bank Guide All Images And Text ©2006 BioMEDIA ASSOCIATES Shore Types Low tide, sandy beach, clam diggers. Knowing the Low tide, rocky shore, sandstone shelves ,The time and extent of low tides is important for people amount of beach exposed at low tide depends both on who collect intertidal organisms for food. the level the tide will reach, and on the gradient of the beach. Low tide, Salt Point, CA, mixed sandstone and hard Low tide, granite boulders, The geology of intertidal rock boulders. A rocky beach at low tide. Rocks in the areas varies widely. Here, vertical faces of exposure background are about 15 ft. (4 meters) high. are mixed with gentle slopes, providing much variation in rocky intertidal habitat. Split frame, showing low tide and high tide from same view, Salt Point, California. Identical views Low tide, muddy bay, Bodega Bay, California. of a rocky intertidal area at a moderate low tide (left) Bays protected from winds, currents, and waves tend and moderate high tide (right). Tidal variation between to be shallow and muddy as sediments from rivers these two times was about 9 feet (2.7 m). accumulate in the basin. The receding tide leaves mudflats. High tide, Salt Point, mixed sandstone and hard rock boulders. Same beach as previous two slides, Low tide, muddy bay. In some bays, low tides expose note the absence of exposed algae on the rocks. vast areas of mudflats. The sea may recede several kilometers from the shoreline of high tide Tides Low tide, sandy beach. -
Platyhelminthes) at the Queensland Museum B.M
VOLUME 53 ME M OIRS OF THE QUEENSLAND MUSEU M BRIS B ANE 30 NOVE mb ER 2007 © Queensland Museum PO Box 3300, South Brisbane 4101, Australia Phone 06 7 3840 7555 Fax 06 7 3846 1226 Email [email protected] Website www.qm.qld.gov.au National Library of Australia card number ISSN 0079-8835 Volume 53 is complete in one part. NOTE Papers published in this volume and in all previous volumes of the Memoirs of the Queensland Museum may be reproduced for scientific research, individual study or other educational purposes. Properly acknowledged quotations may be made but queries regarding the republication of any papers should be addressed to the Editor in Chief. Copies of the journal can be purchased from the Queensland Museum Shop. A Guide to Authors is displayed at the Queensland Museum web site www.qm.qld.gov.au/organisation/publications/memoirs/guidetoauthors.pdf A Queensland Government Project Typeset at the Queensland Museum THE STUDY OF TURBELLARIANS (PLATYHELMINTHES) AT THE QUEENSLAND MUSEUM B.M. ANGUS Angus, B.M. 2007 11 30: The study of turbellarians (Platyhelminthes) at the Queensland Museum. Memoirs of the Queensland Museum 53(1): 157-185. Brisbane. ISSN 0079-8835. Turbellarian research was largely ignored in Australia, apart from some early interest at the turn of the 19th century. The modern study of this mostly free-living branch of the phylum Platyhelminthes was led by Lester R.G. Cannon of the Queensland Museum. A background to the study of turbellarians is given particularly as it relates to the efforts of Cannon on symbiotic fauna, and his encouragement of visiting specialists and students. -
A Functional Approach to Resolving the Biogeocomplexity of Two Extreme Environments Haydn Rubelmann III University of South Florida, [email protected]
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 11-12-2014 A Functional Approach to Resolving the Biogeocomplexity of Two Extreme Environments Haydn Rubelmann III University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Marine Biology Commons, and the Microbiology Commons Scholar Commons Citation Rubelmann, Haydn III, "A Functional Approach to Resolving the Biogeocomplexity of Two Extreme Environments" (2014). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/5432 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. A Functional Approach to Resolving the Biogeocomplexity of Two Extreme Environments by Haydn Rubelmann III A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Cell Biology, Microbiology and Molecular Biology College of Arts and Sciences University of South Florida Major Professor: James R. Garey, Ph.D. Randy Larsen, Ph.D. Kathleen Scott, Ph.D. David Merkler, Ph.D. Date of Approval: November 12, 2014 Keywords: environmental microbiology, extremophiles, shallow-water hydrothermal vents, anoxic marine pits Copyright © 2014, Haydn Rubelmann III DEDICATION I would like to dedicate this dissertation to three of my personal champions: my grandfather, Haydn Rubelmann Sr. (1929 - 2004), who encouraged me to pursue an academic career; my stepfather, Dale Jones (1954 - 2008), who was the best father anyone could ever hope for, and my husband, Eduardo Godoy, who suffered through not only 8 years of my doctoral tenure, but a grueling civil liberty injustice that almost wedged the Caribbean Sea between us. -
Rotifer Species Diversity in Mexico: an Updated Checklist
diversity Review Rotifer Species Diversity in Mexico: An Updated Checklist S. S. S. Sarma 1,* , Marco Antonio Jiménez-Santos 2 and S. Nandini 1 1 Laboratory of Aquatic Zoology, FES Iztacala, National Autonomous University of Mexico, Av. de Los Barrios No. 1, Tlalnepantla 54090, Mexico; [email protected] 2 Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Ciudad Universitaria, Mexico City 04510, Mexico; [email protected] * Correspondence: [email protected]; Tel.: +52-55-56231256 Abstract: A review of the Mexican rotifer species diversity is presented here. To date, 402 species of rotifers have been recorded from Mexico, besides a few infraspecific taxa such as subspecies and varieties. The rotifers from Mexico represent 27 families and 75 genera. Molecular analysis showed about 20 cryptic taxa from species complexes. The genera Lecane, Trichocerca, Brachionus, Lepadella, Cephalodella, Keratella, Ptygura, and Notommata accounted for more than 50% of all species recorded from the Mexican territory. The diversity of rotifers from the different states of Mexico was highly heterogeneous. Only five federal entities (the State of Mexico, Michoacán, Veracruz, Mexico City, Aguascalientes, and Quintana Roo) had more than 100 species. Extrapolation of rotifer species recorded from Mexico indicated the possible occurrence of more than 600 species in Mexican water bodies, hence more sampling effort is needed. In the current review, we also comment on the importance of seasonal sampling in enhancing the species richness and detecting exotic rotifer taxa in Mexico. Keywords: rotifera; distribution; checklist; taxonomy Citation: Sarma, S.S.S.; Jiménez-Santos, M.A.; Nandini, S. Rotifer Species Diversity in Mexico: 1. -
Marine Ecological Genomics: When Genomics Meets Marine Ecology
MARINE ECOLOGY PROGRESS SERIES Vol. 332: 257–273, 2007 Published March 5 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Marine ecological genomics: when genomics meets marine ecology Samuel Dupont*, Karen Wilson, Mathias Obst, Helen Sköld, Hiroaki Nakano, Michael C. Thorndyke Kristineberg Marine Station, 566 Kristineberg, 45034 Fiskebäckskil, Sweden ABSTRACT: Genomics, proteomics and metabolomics (the ’omic’ technologies) have revolutionized the way we work and are able to think about working, and have opened up hitherto unimagined opportunities in all research fields. In marine ecology, while ‘standard’ molecular and genetic approaches are well known, the newer technologies are taking longer to make an impact. In this review we explore the potential and promise offered by genomics, genome technologies, expressed sequence tag (EST) collections, microarrays, proteomics and bar coding for modern marine ecology. Methods are succinctly presented with both benefits and limitations discussed. Through examples from the literature, we show how these tools can be used to answer fundamental ecological questions, e.g. ‘what is the relationship between community structure and ecological function in ecosystems?’; ‘how can a species and the phylogenetic relationship between taxa be identified?’; ‘what are the fac- tors responsible for the limits of the ecological niche?’; or ‘what explains the variations in life-history patterns among species?’ The impact of ecological ideas and concepts on genomic science is also dis- cussed. KEY WORDS: Sequencing · ESTs · Microarrays · Proteomics · Barcoding Resale or republication not permitted without written consent of the publisher INTRODUCTION isms have been sequenced and analyzed since the publication of the first complete genome in 1995, and Genome-based technologies are revolutionizing our today a new organism is sequenced nearly every week understanding of biology at all levels, from genes to (Rogers & Venter 2005, Van Straalen & Roelofs 2006). -
Animal Phylogeny and the Ancestry of Bilaterians: Inferences from Morphology and 18S Rdna Gene Sequences
EVOLUTION & DEVELOPMENT 3:3, 170–205 (2001) Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences Kevin J. Peterson and Douglas J. Eernisse* Department of Biological Sciences, Dartmouth College, Hanover NH 03755, USA; and *Department of Biological Science, California State University, Fullerton CA 92834-6850, USA *Author for correspondence (email: [email protected]) SUMMARY Insight into the origin and early evolution of the and protostomes, with ctenophores the bilaterian sister- animal phyla requires an understanding of how animal group, whereas 18S rDNA suggests that the root is within the groups are related to one another. Thus, we set out to explore Lophotrochozoa with acoel flatworms and gnathostomulids animal phylogeny by analyzing with maximum parsimony 138 as basal bilaterians, and with cnidarians the bilaterian sister- morphological characters from 40 metazoan groups, and 304 group. We suggest that this basal position of acoels and gna- 18S rDNA sequences, both separately and together. Both thostomulids is artifactal because for 1000 replicate phyloge- types of data agree that arthropods are not closely related to netic analyses with one random sequence as outgroup, the annelids: the former group with nematodes and other molting majority root with an acoel flatworm or gnathostomulid as the animals (Ecdysozoa), and the latter group with molluscs and basal ingroup lineage. When these problematic taxa are elim- other taxa with spiral cleavage. Furthermore, neither brachi- inated from the matrix, the combined analysis suggests that opods nor chaetognaths group with deuterostomes; brachiopods the root lies between the deuterostomes and protostomes, are allied with the molluscs and annelids (Lophotrochozoa), and Ctenophora is the bilaterian sister-group. -
Atp8 Is in the Ground Pattern of Flatworm Mitochondrial Genomes Bernhard Egger1* , Lutz Bachmann2 and Bastian Fromm3
Egger et al. BMC Genomics (2017) 18:414 DOI 10.1186/s12864-017-3807-2 RESEARCH ARTICLE Open Access Atp8 is in the ground pattern of flatworm mitochondrial genomes Bernhard Egger1* , Lutz Bachmann2 and Bastian Fromm3 Abstract Background: To date, mitochondrial genomes of more than one hundred flatworms (Platyhelminthes) have been sequenced. They show a high degree of similarity and a strong taxonomic bias towards parasitic lineages. The mitochondrial gene atp8 has not been confidently annotated in any flatworm sequenced to date. However, sampling of free-living flatworm lineages is incomplete. We addressed this by sequencing the mitochondrial genomes of the two small-bodied (about 1 mm in length) free-living flatworms Stenostomum sthenum and Macrostomum lignano as the first representatives of the earliest branching flatworm taxa Catenulida and Macrostomorpha respectively. Results: We have used high-throughput DNA and RNA sequence data and PCR to establish the mitochondrial genome sequences and gene orders of S. sthenum and M. lignano. The mitochondrial genome of S. sthenum is 16,944 bp long and includes a 1,884 bp long inverted repeat region containing the complete sequences of nad3, rrnS, and nine tRNA genes. The model flatworm M. lignano has the smallest known mitochondrial genome among free- living flatworms, with a length of 14,193 bp. The mitochondrial genome of M. lignano lacks duplicated genes, however, tandem repeats were detected in a non-coding region. Mitochondrial gene order is poorly conserved in flatworms, only a single pair of adjacent ribosomal or protein-coding genes – nad4l-nad4 – was found in S. sthenum and M. -
Recent Progress in Reconstructing Lophotrochozoan (Spiralian) Phylogeny
Organisms Diversity & Evolution (2019) 19:557–566 https://doi.org/10.1007/s13127-019-00412-4 REVIEW Recent progress in reconstructing lophotrochozoan (spiralian) phylogeny Christoph Bleidorn1 Received: 29 March 2019 /Accepted: 11 August 2019 /Published online: 22 August 2019 # Gesellschaft für Biologische Systematik 2019 Abstract Lophotrochozoa (also called Spiralia), the sister taxon of Ecdysozoa, includes animal taxa with disparate body plans such as the segmented annelids, the shell bearing molluscs and brachiopods, the colonial bryozoans, the endoparasitic acanthocephalans and the acoelomate platyhelminths. Phylogenetic relationships within Lophotrochozoa have been notoriously difficult to resolve leading to the point that they are often represented as polytomy. Recent studies focussing on phylogenomics, Hox genes and fossils provided new insights into the evolutionary history of this difficult group. New evidence supporting the inclusion of chaetognaths within gnathiferans, the phylogenetic position of Orthonectida and Dicyemida, as well as the general phylogeny of lophotrochozoans is reviewed. Several taxa formerly erected based on morphological synapomorphies (e.g. Lophophorata, Tetraneuralia, Parenchymia) seem (finally) to get additional support from phylogenomic analyses. Keywords Lophotrochozoa . Chaetognatha . Phylogenomics . Rare genomic changes . Annelida Molecular systematics revolutionized and revitalized the Weigertetal.2014;Andradeetal.2015;Laumeretal. field of animal phylogenetics. The landmark publications 2015a;Strucketal.2015;Struck2019), Platyhelminthes of Halanych et al. (1995) and Aguinaldo et al. (1997) (Egger et al. 2015;Laumeretal.2015b)orMollusca shaped our new view of animal phylogeny by establishing (Kocot et al. 2011; Smith et al. 2011). However, the phy- a system where the vast majority of bilaterian diversity is logeny within Lophotrochozoa is still strongly debated. grouped into Deuterostomia, Ecdysozoa and One of the few phylogenetic hypotheses which unambig- Lophotrochozoa (Halanych 2004). -
Phylum Rotifera, Species-Group Names Established Before 1 January 2000
List of Available Names in Zoology, Candidate Part Phylum Rotifera, species-group names established before 1 January 2000 1) Completely defined names (A-list) compiled by Christian D. Jersabek Willem H. De Smet Claus Hinz Diego Fontaneto Charles G. Hussey Evangelia Michaloudi Robert L. Wallace Hendrik Segers Final version, 11 April 2018 Acronym Repository with name-bearing rotifer types AM Australian Museum, Sydney, Australia AMNH American Museum of Natural History, New York, USA ANSP Academy of Natural Sciences of Drexel University, Philadelphia, USA BLND Biology Laboratory, Nihon Daigaku, Saitama, Japan BM Brunei Museum (Natural History Section), Darussalam, Brunei CHRIST Christ College, Irinjalakuda, Kerala, India CMN Canadian Museum of Nature, Ottawa, Canada CMNZ Canterbury Museum, Christchurch, New Zealand CPHERI Central Public Health Engineering Research Institute (Zoology Division), Nagpur, India CRUB Centro Regional Universitario Bariloche, Universidad Nacional del Comahue, Bariloche, Argentina EAS-VLS Estonian Academy of Sciences, Vörtsjärv Limnological Station, Estonia ECOSUR El Colegio de la Frontera Sur, Chetumal, Quintana Roo State, Mexico FNU Fujian Normal University, Fuzhou, China HRBNU Harbin Normal University, Harbin, China IBVV Papanin Institute of the Biology of Inland Waters, Russian Academy of Sciences, Borok, Russia IHB-CAS Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China IMC Indian Museum, Calcutta, India INALI Instituto National de Limnologia, Santo Tome, Argentina INPA Instituto Nacional de