Mammalian Germ Cells Are Determined After PGC Colonization of the Nascent Gonad SEE COMMENTARY
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Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma
Anatomy and Pathology Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma Sarah L. Lake,1 Sarah E. Coupland,1 Azzam F. G. Taktak,2 and Bertil E. Damato3 PURPOSE. To detect deletions and loss of heterozygosity of disease is fatal in 92% of patients within 2 years of diagnosis. chromosome 3 in a rare subset of fatal, disomy 3 uveal mela- Clinical and histopathologic risk factors for UM metastasis noma (UM), undetectable by fluorescence in situ hybridization include large basal tumor diameter (LBD), ciliary body involve- (FISH). ment, epithelioid cytomorphology, extracellular matrix peri- ϩ ETHODS odic acid-Schiff-positive (PAS ) loops, and high mitotic M . Multiplex ligation-dependent probe amplification 3,4 5 (MLPA) with the P027 UM assay was performed on formalin- count. Prescher et al. showed that a nonrandom genetic fixed, paraffin-embedded (FFPE) whole tumor sections from 19 change, monosomy 3, correlates strongly with metastatic death, and the correlation has since been confirmed by several disomy 3 metastasizing UMs. Whole-genome microarray analy- 3,6–10 ses using a single-nucleotide polymorphism microarray (aSNP) groups. Consequently, fluorescence in situ hybridization were performed on frozen tissue samples from four fatal dis- (FISH) detection of chromosome 3 using a centromeric probe omy 3 metastasizing UMs and three disomy 3 tumors with Ͼ5 became routine practice for UM prognostication; however, 5% years’ metastasis-free survival. to 20% of disomy 3 UM patients unexpectedly develop metas- tases.11 Attempts have therefore been made to identify the RESULTS. Two metastasizing UMs that had been classified as minimal region(s) of deletion on chromosome 3.12–15 Despite disomy 3 by FISH analysis of a small tumor sample were found these studies, little progress has been made in defining the key on MLPA analysis to show monosomy 3. -
Gene Therapy Glossary of Terms
GENE THERAPY GLOSSARY OF TERMS A • Phase 3: A phase of research to describe clinical trials • Allele: one of two or more alternative forms of a gene that that gather more information about a drug’s safety and arise by mutation and are found at the same place on a effectiveness by studying different populations and chromosome. different dosages and by using the drug in combination • Adeno-Associated Virus: A single stranded DNA virus that has with other drugs. These studies typically involve more not been found to cause disease in humans. This type of virus participants.7 is the most frequently used in gene therapy.1 • Phase 4: A phase of research to describe clinical trials • Adenovirus: A member of a family of viruses that can cause occurring after FDA has approved a drug for marketing. infections in the respiratory tract, eye, and gastrointestinal They include post market requirement and commitment tract. studies that are required of or agreed to by the study • Adeno-Associated Virus Vector: Adeno viruses used as sponsor. These trials gather additional information about a vehicles for genes, whose core genetic material has been drug’s safety, efficacy, or optimal use.8 removed and replaced by the FVIII- or FIX-gene • Codon: a sequence of three nucleotides in DNA or RNA • Amino Acids: building block of a protein that gives instructions to add a specific amino acid to an • Antibody: a protein produced by immune cells called B-cells elongating protein in response to a foreign molecule; acts by binding to the • CRISPR: a family of DNA sequences that can be cleaved by molecule and often making it inactive or targeting it for specific enzymes, and therefore serve as a guide to cut out destruction and insert genes. -
RNA-Binding Proteins in Human Oogenesis: Balancing Differentiation and Self-Renewal in the Female Fetal Germline
Stem Cell Research 21 (2017) 193–201 Contents lists available at ScienceDirect Stem Cell Research journal homepage: www.elsevier.com/locate/scr RNA-binding proteins in human oogenesis: Balancing differentiation and self-renewal in the female fetal germline Roseanne Rosario a, Andrew J. Childs b, Richard A. Anderson a,⁎ a MRC Centre for Reproductive Health, Queen's Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh EH16 4TJ, UK b Department of Comparative Biomedical Sciences, The Royal Veterinary College, London NW1 0TU, UK article info abstract Article history: Primordial germ cells undergo three significant processes on their path to becoming primary oocytes: the initia- Received 7 October 2016 tion of meiosis, the formation and breakdown of germ cell nests, and the assembly of single oocytes into primor- Received in revised form 29 March 2017 dial follicles. However at the onset of meiosis, the germ cell becomes transcriptionally silenced. Consequently Accepted 13 April 2017 translational control of pre-stored mRNAs plays a central role in coordinating gene expression throughout the re- Available online 18 April 2017 mainder of oogenesis; RNA binding proteins are key to this regulation. In this review we examine the role of ex- Keywords: emplars of such proteins, namely LIN28, DAZL, BOLL and FMRP, and highlight how their roles during germ cell Germ cell differentiation development are critical to oogenesis and the establishment of the primordial follicle pool. RNA binding proteins © 2017 The Authors. -
Human Germline Genome Editing: Fact Sheet
Human germline genome editing: fact sheet Purpose • To contribute to evidence-informed discussions about human germline genome editing. KEY TAKEAWAYS • Gene editing offers the potential to improve human health in ways not previously possible. • Making changes to human genes that can be passed on to future generations is prohibited in Australia. • Unresolved questions remain on the possible long-term impacts, unintended consequences, and ethical issues associated with introducing heritable changes by editing of the genome of human gametes (sperm and eggs) and embryos. • AusBiotech believes the focus of human gene editing should remain on non-inheritable changes until such time as the scientific evidence, regulatory frameworks and health care models have progressed sufficiently to warrant consideration of any heritable genetic edits. Gene editing Gene editing is the insertion, deletion, or modification of DNA to modify an organism’s specific genetic characteristics. New and evolving gene editing techniques and tools (e.g. CRISPR) allow editing of genes with a level of precision that increases its applications across the health, agricultural, and industrial sectors. These breakthrough techniques potentially offer a range of different options for treating devastating human diseases and delivering environmentally sustainable food production systems that can feed the world’s growing population, which is expected to exceed nine billion by 2050. The current primary application of human gene editing is on non-reproductive cells (‘somatic’ cells) -
A Role for Dazl in Commitment to Gametogenic Fate in Embryonic Germ Cells of C57BL/6 Mice
A Role for Dazl in Commitment to Gametogenic Fate in Embryonic Germ Cells of C57BL/6 Mice by Yanfeng Lin (Yen-Hong Lim) B.S. Biochemistry and Molecular and Cell Biology University of Wisconsin-Madison, 1998 SUBMITTED TO THE DEPARTMENT OF BIOLOGY IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGY AT THE MASSACHUSETTS INSTITUTE OF TECHNOLOGY SEPT 2005 C 2005 Yanfeng Lin. All rights reserved. The author hereby grants to MIT permission to reproduce and distribute publicly paper and electronic copies of this thesis document in whole or in part. Signature of Author __ _ __ Department of Biology August, 2005 V /-' ~J-2 Certified by David C. Page Professor of Biology Howard Hughes Medical Institute Thesis Supervisor Accepted b) Stephen P. Bell Co-chair, Biology Graduate Student Committee 'MACHUS ETT S NS1 I OF TECHNOLOGY ARCHIVES' OCT 0 2005 . ,. -~ I LIBRARIES .i. __ A Role for Dazl in Commitment to Gametogenic Fate in Embryonic Germ Cells of C57BL/6 Mice by Yanfeng Lin (Yen-Hong Lim) Submitted to the Department of Biology on June, 2005 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Biology Abstract Germ cells can be defined as the cells that undergo the terminal differentiating process of meiosis. In mice, as XX germ cells enter meiosis around Embryonic days 13.5-14.5 (E13.5-E14.5), they form meiotic figures and down-regulate pluripotency markers. XY germ cells enter proliferation arrest between E13.5 and E16.5, which is accompanied by a distinct morphological change as well. -
Expression of DAZL Gene in Selected Tissues and Association of Its Polymorphisms with Testicular Size in Hu Sheep
animals Article Expression of DAZL Gene in Selected Tissues and Association of Its Polymorphisms with Testicular Size in Hu Sheep 1, 1, 1 1,2 1 1, Zehu Yuan y, Jing Luo y, Li Wang , Fadi Li , Wanhong Li and Xiangpeng Yue * 1 State Key Laboratory of Grassland Agro-Ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Engineering Research Center of Grassland Industry, Ministry of Education, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China; [email protected] (Z.Y.); [email protected] (J.L.); [email protected] (L.W.); [email protected] (F.L.); [email protected] (W.L.) 2 Engineering Laboratory of Sheep Breeding and Reproduction Biotechnology in Gansu Province, Minqin 733300, China * Correspondence: [email protected] These authors contributed equally to this work. y Received: 9 March 2020; Accepted: 20 April 2020; Published: 23 April 2020 Simple Summary: The deleted in azoospermia-like (DAZL) is an RNA binding protein coding gene in autosomal, playing important roles in testicular development and gametogenesis. In this paper, we found that DAZL is extremely highly expressed in testis compared with other organs and reaches to a peak at sex maturity (6-month old) in testis. Two single nucleotide polymorphisms (SNPs) within DAZL were found to have significant effect on the variation coefficient between left and right epididymis weight. Abstract: The deleted in azoospermia-like (DAZL) gene encoding an RNA binding protein is pivotal in gametogenesis in lots of species and also acts as a pre-meiosis marker. -
Role and Regulation of the P53-Homolog P73 in the Transformation of Normal Human Fibroblasts
Role and regulation of the p53-homolog p73 in the transformation of normal human fibroblasts Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Bayerischen Julius-Maximilians-Universität Würzburg vorgelegt von Lars Hofmann aus Aschaffenburg Würzburg 2007 Eingereicht am Mitglieder der Promotionskommission: Vorsitzender: Prof. Dr. Dr. Martin J. Müller Gutachter: Prof. Dr. Michael P. Schön Gutachter : Prof. Dr. Georg Krohne Tag des Promotionskolloquiums: Doktorurkunde ausgehändigt am Erklärung Hiermit erkläre ich, dass ich die vorliegende Arbeit selbständig angefertigt und keine anderen als die angegebenen Hilfsmittel und Quellen verwendet habe. Diese Arbeit wurde weder in gleicher noch in ähnlicher Form in einem anderen Prüfungsverfahren vorgelegt. Ich habe früher, außer den mit dem Zulassungsgesuch urkundlichen Graden, keine weiteren akademischen Grade erworben und zu erwerben gesucht. Würzburg, Lars Hofmann Content SUMMARY ................................................................................................................ IV ZUSAMMENFASSUNG ............................................................................................. V 1. INTRODUCTION ................................................................................................. 1 1.1. Molecular basics of cancer .......................................................................................... 1 1.2. Early research on tumorigenesis ................................................................................. 3 1.3. Developing -
Through a Network of Polya-Proximal Mrna Connections, Dazl Governs Germ Cell Survival
y: Ope g n A lo c ro c d e s n s A ISSN: 2167-0250 Andrology- Open Access Editorial Through a Network of PolyA-Proximal mRNA Connections, Dazl Governs Germ Cell Survival Tobin Eze* Department of Community Medicine, University of Port Harcourt Teaching Hospital, Port Harcourt, Nigeria DESCRIPTION RNA Restricting Proteins (RBPs) are powerful post- mRNA soundness or interpretation. What's more, yeast two half transcriptional controllers of quality articulation. In the core, breed examination of Dazl-interactors distinguished RBPs with RBPs can adjust pre-mRNA handling to produce mRNAs with cytoplasmic jobs in mRNA guideline including Pum2, QK3, and various coding and non-coding successions. In the cytoplasm, the polyA-restricting protein Pabpc1. Nonetheless, the shortage RBPs impact mRNA restriction, interpretation, and strength, and variable number of germ cells present in DAZL KO mice regularly through associations with 3' Untranslated Locales have introduced significant hindrances to examining Dazl's (3'UTRs). Guideline of mRNA preparing and interpretation is immediate in vivo function(s) in the male germline. These particularly important during spermatogenesis, the profoundly endeavors have recommended assorted capacities for Dazl in requested interaction of post pregnancy male germ cell various cell settings, remembering jobs for mRNA adjustment, advancement that yields haploid spermatozoa. The initial not stress granule get together, mRNA restriction, and many post pregnancy days are basic for the foundation of interpretation. Notwithstanding, transfection tests have shown spermatogonial immature microorganisms which are needed for that Dazl can effectsly affect a similar correspondent RNA in proceeded with sperm creation all through life. The significance various physical cell lines. -
The Male Germline-Specific Protein MAPS Is Indispensable for Pachynema Progression and Fertility
The male germline-specific protein MAPS is indispensable for pachynema progression and fertility Miao Lia,b, Jiahuan Zhenga,b, Gaopeng Lic, Zexiong Lina, Dongliang Lia, Dongteng Liua,b, Haiwei Fenga,b, Dandan Caoa, Ernest H. Y. Nga,b, Raymond H. W. Lia,b, Chunsheng Hand,e,f, William S. B. Yeunga,b, Louise T. Chowc,1, Hengbin Wangc,1, and Kui Liua,b,1 aShenzhen Key Laboratory of Fertility Regulation, Center of Assisted Reproduction and Embryology, The University of Hong Kong–Shenzhen Hospital, 518053 Shenzhen, Guangdong, China; bDepartment of Obstetrics and Gynecology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China; cDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL 35294-0024; dState Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China; eInstitute for Stem Cell and Regeneration, Chinese Academy of Sciences, 100101 Beijing, China; and fUniversity of Chinese Academy of Sciences, Chinese Academy of Sciences, 100049 Beijing, China Contributed by Louise T. Chow, January 12, 2021 (sent for review December 10, 2020; reviewed by Anders Hofer, Kazuhiro Kawamura, and Mingxi Liu) Meiosis is a specialized cell division that creates haploid germ cells to transient transcriptional silencing in a process termed meiotic from diploid progenitors. Through differential RNA expression sex chromosome inactivation (MSCI) (6, 7). analyses, we previously identified a number of mouse genes that Over the past decades, the underlying molecular aspects of were dramatically elevated in spermatocytes, relative to their very meiosis prophase I have been widely studied. Various mutant low expression in spermatogonia and somatic organs. -
Genomic and Expression Profiling of Human Spermatocytic Seminomas: Primary Spermatocyte As Tumorigenic Precursor and DMRT1 As Candidate Chromosome 9 Gene
Research Article Genomic and Expression Profiling of Human Spermatocytic Seminomas: Primary Spermatocyte as Tumorigenic Precursor and DMRT1 as Candidate Chromosome 9 Gene Leendert H.J. Looijenga,1 Remko Hersmus,1 Ad J.M. Gillis,1 Rolph Pfundt,4 Hans J. Stoop,1 Ruud J.H.L.M. van Gurp,1 Joris Veltman,1 H. Berna Beverloo,2 Ellen van Drunen,2 Ad Geurts van Kessel,4 Renee Reijo Pera,5 Dominik T. Schneider,6 Brenda Summersgill,7 Janet Shipley,7 Alan McIntyre,7 Peter van der Spek,3 Eric Schoenmakers,4 and J. Wolter Oosterhuis1 1Department of Pathology, Josephine Nefkens Institute; Departments of 2Clinical Genetics and 3Bioinformatics, Erasmus Medical Center/ University Medical Center, Rotterdam, the Netherlands; 4Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands; 5Howard Hughes Medical Institute, Whitehead Institute and Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts; 6Clinic of Paediatric Oncology, Haematology and Immunology, Heinrich-Heine University, Du¨sseldorf, Germany; 7Molecular Cytogenetics, Section of Molecular Carcinogenesis, The Institute of Cancer Research, Sutton, Surrey, United Kingdom Abstract histochemistry, DMRT1 (a male-specific transcriptional regulator) was identified as a likely candidate gene for Spermatocytic seminomas are solid tumors found solely in the involvement in the development of spermatocytic seminomas. testis of predominantly elderly individuals. We investigated these tumors using a genome-wide analysis for structural and (Cancer Res 2006; 66(1): 290-302) numerical chromosomal changes through conventional kar- yotyping, spectral karyotyping, and array comparative Introduction genomic hybridization using a 32 K genomic tiling-path Spermatocytic seminomas are benign testicular tumors that resolution BAC platform (confirmed by in situ hybridization). -
Guide to Interpreting Genomic Reports: a Genomics Toolkit
Guide to Interpreting Genomic Reports: A Genomics Toolkit A guide to genomic test results for non-genetics providers Created by the Practitioner Education Working Group of the Clinical Sequencing Exploratory Research (CSER) Consortium Genomic Report Toolkit Authors Kelly East, MS, CGC, Wendy Chung MD, PhD, Kate Foreman, MS, CGC, Mari Gilmore, MS, CGC, Michele Gornick, PhD, Lucia Hindorff, PhD, Tia Kauffman, MPH, Donna Messersmith , PhD, Cindy Prows, MSN, APRN, CNS, Elena Stoffel, MD, Joon-Ho Yu, MPh, PhD and Sharon Plon, MD, PhD About this resource This resource was created by a team of genomic testing experts. It is designed to help non-geneticist healthcare providers to understand genomic medicine and genome sequencing. The CSER Consortium1 is an NIH-funded group exploring genomic testing in clinical settings. Acknowledgements This work was conducted as part of the Clinical Sequencing Exploratory Research (CSER) Consortium, grants U01 HG006485, U01 HG006485, U01 HG006546, U01 HG006492, UM1 HG007301, UM1 HG007292, UM1 HG006508, U01 HG006487, U01 HG006507, R01 HG006618, and U01 HG007307. Special thanks to Alexandria Wyatt and Hugo O’Campo for graphic design and layout, Jill Pope for technical editing, and the entire CSER Practitioner Education Working Group for their time, energy, and support in developing this resource. Contents 1 Introduction and Overview ................................................................ 3 2 Diagnostic Results Related to Patient Symptoms: Pathogenic and Likely Pathogenic Variants . 8 3 Uncertain Results -
Biology of the Caenorhabditis Elegans Germline Stem Cell System
| WORMBOOK CELL FATE, SIGNALING, AND DEVELOPMENT Biology of the Caenorhabditis elegans Germline Stem Cell System E. Jane Albert Hubbard*,1 and Tim Schedl†,1 *Skirball Institute of Biomolecular Medicine, Departments of Cell Biology and Pathology, New York University School of Medicine, † New York 10016 and Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110 ORCID IDs: 0000-0001-5893-7232 (E.J.A.H.); 0000-0003-2148-2996 (T.S.) ABSTRACT Stem cell systems regulate tissue development and maintenance. The germline stem cell system is essential for animal reproduction, controlling both the timing and number of progeny through its influence on gamete production. In this review, we first draw general comparisons to stem cell systems in other organisms, and then present our current understanding of the germline stem cell system in Caenorhabditis elegans. In contrast to stereotypic somatic development and cell number stasis of adult somatic cells in C. elegans, the germline stem cell system has a variable division pattern, and the system differs between larval development, early adult peak reproduction and age-related decline. We discuss the cell and developmental biology of the stem cell system and the Notch regulated genetic network that controls the key decision between the stem cell fate and meiotic development, as it occurs under optimal laboratory conditions in adult and larval stages. We then discuss alterations of the stem cell system in response to environ- mental perturbations and aging. A recurring distinction is between processes that control stem cell fate and those that control cell cycle regulation. C. elegans is a powerful model for understanding germline stem cells and stem cell biology.