Biosynthesis of Heme in Mammals ⁎ Richard S
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Spectroscopy of Porphyrins
BORIS F. KIM and JOSEPH BOHANDY SPECTROSCOPY OF PORPHYRINS Porphyrins are an important class of compounds that are of interest in molecular biology because of the important roles they play in vital biochemical systems such as biochemical energy conversion in animals, oxygen transport in blood, and photosynthetic energy conversion in plants. We are studying the physical properties of the energy states of porphyrins using the techniques of ex perimental and theoretical spectroscopy with the aim of contributing to a basic understanding of their biochemical behavior. INTRODUCTION Metalloporphin Porphyrins are a class of complex organic chemical compounds found in such diverse places as crude oil, plants, and human beings. They are, in most cases, tailored to carry out vital chemical transformations in intricate biochemical or biophysical systems. They are the key constituents of chlorophyll in plants and of hemoglobin in animals. Without them, life would y be impossible. t Free base porphin These molecules display a wide range of chemical and physical properties that depend on the structural details of the particular porphyrin molecule. All por ~x phyrins are vividly colored and absorb light in the visible and ultraviolet regions of the spectrum. Some exhibit luminescence, paramagnetism, photoconduc tion, or semiconduction. Spme are photosensitizers Wavelength (nanometers) or catalysts. Scientists from several disciplines have been interested in unraveling the principles that cause Fig. 1-The chemical structures for the two forms of por· this diversity of properties. phin are shown on the left. A carbon atom and a hydrogen The simplest compound of all porphyrins is por atom are understood to be at each apex not attached to a nitrogen atom. -
Crystal Structure of Uroporphyrinogen III Synthase from Pseudomonas Syringae Pv. Tomato DC3000
Biochemical and Biophysical Research Communications 408 (2011) 576–581 Contents lists available at ScienceDirect Biochemical and Biophysical Research Communications journal homepage: www.elsevier.com/locate/ybbrc Crystal structure of uroporphyrinogen III synthase from Pseudomonas syringae pv. tomato DC3000 ⇑ Shuxia Peng a,b, Hongmei Zhang a, Yu Gao a, Xiaowei Pan a, Peng Cao a, Mei Li a, Wenrui Chang a, a National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, Beijing 100101, PR China b Graduate University of the Chinese Academy of Sciences, Beijing 100049, PR China article info abstract Article history: Uroporphyrinogen III synthase (U3S) is one of the key enzymes in the biosynthesis of tetrapyrrole com- Received 11 April 2011 pounds. It catalyzes the cyclization of the linear hydroxymethylbilane (HMB) to uroporphyrinogen III Available online 19 April 2011 (uro’gen III). We have determined the crystal structure of U3S from Pseudomonas syringae pv. tomato DC3000 (psU3S) at 2.5 Å resolution by the single wavelength anomalous dispersion (SAD) method. Each Keywords: psU3S molecule consists of two domains interlinked by a two-stranded antiparallel b-sheet. The confor- Uroporphyrinogen III synthase mation of psU3S is different from its homologous proteins because of the flexibility of the linker between Crystal structure the two domains, which might be related to this enzyme’s catalytic properties. Based on mutation and Mutation activity analysis, a key residue, Arg219, was found to be important for the catalytic activity of psU3S. Enzymatic activity Tetrapyrroles Mutation of Arg219 to Ala caused a decrease in enzymatic activity to about 25% that of the wild type enzyme. -
Mitochondrial Transport of Protoporphyrinogen IX in Erythroid Cells
www.impactjournals.com/oncotarget/ Oncotarget, Vol. 6, No. 25 Editorial Mitochondrial transport of protoporphyrinogen IX in erythroid cells Yvette Y. Yien, Alessa R. Ringel and Barry H. Paw Comment on: Yien Y, et al. TMEM14C is required for erythroid mitochondrial heme metabolism. J. Clin. Invest. 2014; 124:4294-4304. Heme plays a vital role in essential processes factors, indicating the presence of extragenic modifiers of such as detoxification, oxygen transport, circadian the disease that participate in the heme synthesis pathway. rhythm, microRNA processing, respiration, regulation Among potential modifiers are the genes required for of transcription and translation, and apoptosis. The the transport of heme, heme intermediates and iron majority of heme in the body is synthesized in red blood (summarized in Figure 1). One such example is a loss-of- cells, whose function is to transport oxygen via the function mutation in MFRN1 (SLC25A37), the erythroid heme-containing oxygen carrier protein, hemoglobin. mitochondrial iron transporter, which exacerbated Defects in erythroid heme homeostasis can result in protoporphyrin IX accumulation due to a gain-of-function anemia, caused by the decrease in hemoglobin synthesis, C-terminal deletion in ALAS2 [2]. porphyria, caused by accumulation of photoreactive heme In an RNAseq screen for transporters of heme intermediates, and iron overload [1]. intermediates in terminally differentiating erythroid Heme synthesis requires the coordinated transport cells, we identified Tmem14c as a gene that is required of heme intermediates and iron within the cell and across for heme synthesis and erythropoiesis in zebrafish and membranes to provide substrates access to enzymes, mice [3]. TMEM14C is an inner mitochondrial membrane prevent intercalation of photo-reactive heme intermediates protein with three tightly packed transmembrane into cellular membranes, and minimize generation of helices, predictive of its function as a transporter [4]. -
Viewed Under 23 (B) Or 203 (C) fi M M Male Cko Mice, and Largely Unaffected Magni Cation; Scale Bars, 500 M (B) and 50 M (C)
BRIEF COMMUNICATION www.jasn.org Renal Fanconi Syndrome and Hypophosphatemic Rickets in the Absence of Xenotropic and Polytropic Retroviral Receptor in the Nephron Camille Ansermet,* Matthias B. Moor,* Gabriel Centeno,* Muriel Auberson,* † † ‡ Dorothy Zhang Hu, Roland Baron, Svetlana Nikolaeva,* Barbara Haenzi,* | Natalya Katanaeva,* Ivan Gautschi,* Vladimir Katanaev,*§ Samuel Rotman, Robert Koesters,¶ †† Laurent Schild,* Sylvain Pradervand,** Olivier Bonny,* and Dmitri Firsov* BRIEF COMMUNICATION *Department of Pharmacology and Toxicology and **Genomic Technologies Facility, University of Lausanne, Lausanne, Switzerland; †Department of Oral Medicine, Infection, and Immunity, Harvard School of Dental Medicine, Boston, Massachusetts; ‡Institute of Evolutionary Physiology and Biochemistry, St. Petersburg, Russia; §School of Biomedicine, Far Eastern Federal University, Vladivostok, Russia; |Services of Pathology and ††Nephrology, Department of Medicine, University Hospital of Lausanne, Lausanne, Switzerland; and ¶Université Pierre et Marie Curie, Paris, France ABSTRACT Tight control of extracellular and intracellular inorganic phosphate (Pi) levels is crit- leaves.4 Most recently, Legati et al. have ical to most biochemical and physiologic processes. Urinary Pi is freely filtered at the shown an association between genetic kidney glomerulus and is reabsorbed in the renal tubule by the action of the apical polymorphisms in Xpr1 and primary fa- sodium-dependent phosphate transporters, NaPi-IIa/NaPi-IIc/Pit2. However, the milial brain calcification disorder.5 How- molecular identity of the protein(s) participating in the basolateral Pi efflux remains ever, the role of XPR1 in the maintenance unknown. Evidence has suggested that xenotropic and polytropic retroviral recep- of Pi homeostasis remains unknown. Here, tor 1 (XPR1) might be involved in this process. Here, we show that conditional in- we addressed this issue in mice deficient for activation of Xpr1 in the renal tubule in mice resulted in impaired renal Pi Xpr1 in the nephron. -
Tfr2, Hfe, and Hjv in the Regulation of Body Iron Homeostasis
TFR2, HFE, AND HJV IN THE REGULATION OF BODY IRON HOMEOSTASIS By Christal Anna Worthen A DISSERTATION Presented to the Department of Cell & Developmental Biology and the Oregon Health and Science University School of Medicine in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 2014 School of Medicine Oregon Health & Science University CERTIFICATE OF APPROVAL ___________________________________ This is to certify that the PhD dissertation of Christal A Worthen has been approved ______________________________________ Caroline Enns, Ph.D., mentor ______________________________________ Peter Mayinger, Ph.D., Chairman ______________________________________ Philip Stork, M.D. ______________________________________ David Koeller, M.D. ______________________________________ Alex Nechiporuk, Ph.D. TABLE OF CONTENTS i List of Figures ii Acknowledgements iv Abbreviations v Abstract: 1 Chapter 1: Introduction 5 Abstract and Introduction 6 Binding partners, regulation, and trafficking of TFR2 9 Disease-causing mutations in TFR2 12 Hepcidin regulation 12 Physiological function of TFR2 15 Current TFR2 models 18 Summary 19 Figure 21 Chapter 2: The cytoplasmic domain of TFR2 is necessary for 22 HFE, HJV, and TFR2 regulation of hepcidin Abstract 23 Capsule & Introduction 24 Materials and Methods 26 Results 32 Figures 41 Discussion 49 Chapter 3: Lack of functional TFR2 results in stress erythropoiesis 53 Introduction 54 Materials and Methods 55 Results 57 Figures 60 Discussion 65 Chapter 4: Conclusions and future directions 67 Appendices Appendix A: Coculture of HepG2 cells reduces hepcidin expression 71 Appendix B: Hfe-/- macrophages handle iron differently 80 Appendix C: Both ZIP14A and ZIP14B are regulated by HFE and iron 91 Appendix D: The cytoplasmic domain of HFE does not interact with 99 ZIP14 loop 2 by yeast-2-hybris References 105 i LIST OF FIGURES Figure Abstract 1: Body iron homeostasis. -
Molecular Expression, Characterization and Mechanism of ALAS2 Gain-Of-Function Mutants Vassili Tchaikovskii, Robert J
Tchaikovskii et al. Molecular Medicine (2019) 25:4 Molecular Medicine https://doi.org/10.1186/s10020-019-0070-9 RESEARCHARTICLE Open Access Molecular expression, characterization and mechanism of ALAS2 gain-of-function mutants Vassili Tchaikovskii, Robert J. Desnick and David F. Bishop* Abstract Background: X-linked protoporphyria (XLP) (MIM 300752) is an erythropoietic porphyria due to gain-of-function mutations in the last exon (Ducamp et al., Hum Mol Genet 22:1280-88, 2013) of the erythroid-specific aminolevulinate synthase gene (ALAS2). Five ALAS2 exon 11 variants identified by the NHBLI Exome sequencing project (p.R559H, p.E565D, p.R572C, p.S573F and p.Y586F) were expressed, purified and characterized in order to assess their possible contribution to XLP. To further characterize the XLP gain-of-function region, five novel ALAS2 truncation mutations (p.P561X, p.V562X, p.H563X, p.E569X and p.F575X) were also expressed and studied. Methods: Site-directed mutagenesis was used to generate ALAS2 mutant clones and all were prokaryotically expressed, purified to near homogeneity and characterized by protein and enzyme kinetic assays. Standard deviations were calculated for 3 or more assay replicates. Results: The five ALAS2 single nucleotide variants had from 1.3- to 1.9-fold increases in succinyl-CoA Vmax and 2- to 3-fold increases in thermostability suggesting that most could be gain-of-function modifiers of porphyria instead of causes. One SNP (p.R559H) had markedly low purification yield indicating enzyme instability as the likely cause for XLSA in an elderly patient with x-linked sideroblastic anemia. The five novel ALAS2 truncation mutations had increased Vmax values for both succinyl-CoA and glycine substrates (1.4 to 5.6-fold over wild-type), while the Kms for both substrates were only modestly changed. -
Erythropoietic Protoporphyrias: Studies of the Natural History, Genotype-Phenotype Correlations, and Psychosocial Impact
Erythropoietic Protoporphyrias: Studies of the Natural History, Genotype-Phenotype Correlations, and Psychosocial Impact PI: Dr. Manisha Balwani NCT01688895 Document Date: Jun 26, 2015 RDCRN PC #7207 EPP Natural History Version Date: V2 26Jun2015 Rare Diseases Clinical Research Network Porphyrias Consortium Erythropoietic Protoporphyrias: Studies of the Natural History, Genotype-Phenotype Correlations, and Psychosocial Impact This protocol is for research purposes only and should not be copied, redistributed, or used for any other purpose. The procedures in this protocol are intended only for use by the Porphyrias Consortium investigators in carefully controlled settings. The Study Chair of this study should be consulted before using this protocol. Study Chair: Manisha Balwani, MD, MS Department of Genetics & Genomic Sciences Icahn School of Medicine at Mount Sinai One Gustave L. Levy Place, Box 1497 New York, NY 10029 Phone: 212-241-0915 Fax: 212-426-9065 Email: [email protected] Page 1 of 31 RDCRN PC #7207 EPP Natural History Version Date: V2 26Jun2015 Table of Contents Contents Participating Institutions/Investigators Table (contact information)............................................................... 4 1. Synopsis .................................................................................................................................................... 6 1.A. Protocol Overview .............................................................................................................................. 8 2. Objective -
Hyperbilirubinemia
Porphyrins Porphyrins (Porphins) are cyclic tetrapyrol compounds formed by the linkage )). of four pyrrole rings through methenyl bridges (( HC In the reduced porphyrins (Porphyrinogens) the linkage of four pyrrole rings (tetrapyrol) through methylene bridges (( CH2 )) The characteristic property of porphyrins is the formation of complexes with the metal ion bound to nitrogen atoms of the pyrrole rings. e.g. Heme (iron porphyrin). Proteins which contain heme ((hemoproteins)) are widely distributed e.g. Hemoglobin, Myoglobin, Cytochromes, Catalase & Tryptophan pyrrolase. Natural porphyrins have substituent side chains on the eight hydrogen atoms numbered on the pyrrole rings. These side chains are: CH 1-Methyl-group (M)… (( 3 )) 2-Acetate-group (A)… (( CH2COOH )) 3-Propionate-group (P)… (( CH2CH2COOH )) 4-Vinyl-group (V)… (( CH CH2 )) Porphyrins with asymmetric arrangement of the side chains are classified as type III porphyrins while those with symmetric arrangement of the side chains are classified as type I porphyrins. Only types I & III are present in nature & type III series is more important because it includes heme. 1 Heme Biosynthesis Heme biosynthesis occurs through the following steps: 1-The starting reaction is the condensation between succinyl-CoA ((derived from citric acid cycle in the mitochondria)) & glycine, this reaction is a rate limiting reaction in the hepatic heme synthesis, it occurs in the mitochondria & is catalyzed by ALA synthase (Aminolevulinate synthase) enzyme in the presence of pyridoxal phosphate as a cofactor. The product of this reaction is α-amino-β-ketoadipate which is rapidly decarboxylated to form δ-aminolevulinate (ALA). 2-In the cytoplasm condensation reaction between two molecules of ALA is catalyzed by ALA dehydratase enzyme to form two molecules of water & one 2 molecule of porphobilinogen (PBG) which is a precursor of pyrrole. -
Electronic Spectroscopy of Free Base Porphyrins and Metalloporphyrins
Absorption and Fluorescence Spectroscopy of Tetraphenylporphyrin§ and Metallo-Tetraphenylporphyrin Introduction The word porphyrin is derived from the Greek porphura meaning purple, and all porphyrins are intensely coloured1. Porphyrins comprise an important class of molecules that serve nature in a variety of ways. The Metalloporphyrin ring is found in a variety of important biological system where it is the active component of the system or in some ways intimately connected with the activity of the system. Many of these porphyrins synthesized are the basic structure of biological porphyrins which are the active sites of numerous proteins, whose functions range from oxygen transfer and storage (hemoglobin and myoglobin) to electron transfer (cytochrome c, cytochrome oxidase) to energy conversion (chlorophyll). They also have been proven to be efficient sensitizers and catalyst in a number of chemical and photochemical processes especially photodynamic therapy (PDT). The diversity of their functions is due in part to the variety of metals that bind in the “pocket” of the porphyrin ring system (Fig. 1). Figure 1. Metallated Tetraphenylporphyrin Upon metalation the porphyrin ring system deprotonates, forming a dianionic ligand (Fig. 2). The metal ions behave as Lewis acids, accepting lone pairs of electrons ________________________________ § We all need to thank Jay Stephens for synthesizing the H2TPP 2 from the dianionic porphyrin ligand. Unlike most transition metal complexes, their color is due to absorption(s) within the porphyrin ligand involving the excitation of electrons from π to π* porphyrin ring orbitals. Figure 2. Synthesis of Zn(TPP) The electronic absorption spectrum of a typical porphyrin consists of a strong transition to the second excited state (S0 S2) at about 400 nm (the Soret or B band) and a weak transition to the first excited state (S0 S1) at about 550 nm (the Q band). -
2013 New Molecular CPT Co
Cleveland Clinic Laboratories 2013 New Molecular CPT Codes 2013 Test Name Order Code Billing Code CPT Codes 2012 CPT Codes ACADM PCR, Complete, Tier 2 ACADM 88175 81404 83891, 83894x10, 83898x10, 83904x20 ACTA2 Gene Sequencing ACTA2 88528 81403 83898x9, 83904x9, 83891 ADmark ApoE Genotype (Symptomatic) APOALZ 82397 81401 83892, 83894, 83898, 81401, 83891 ADmark PS-1 Analysis, Symptomatic PS1SY 83019 81405 83904x10, 83909x10, 83898x10, 83891 Alpha Globin (HBA1 and HBA2) Sequencing HBA12 88847 81257 New test in 2013 Alpha Thalassemia Gene Deletion ATHAL 84123 81257 83891, 83900, 83901x8, 83894 Alpha-1-Antitrypsin Quantitation and Phenotyping PHA1A 84187 81332 82103, 82104 Angelman UBE3A Sequencing UBE3A 88200 81331 83898x8, 83904x10, 83909x10 APO E Genotype APOEG 79374 81401 83891, 81401, 83898, 83896x2 ARX Sequence Analysis ARXSEQ 87860 81404 83890, 83898x5, 83894, 83904x6 Autoimmune Polyglandular Syndrome Evaluation AIRE 83293 81479 83909x14, 83891, 83898x14, 83904x14 Autosomal Dom Ataxia Evaluation AUTOAT 82179 81401, 83909x88, 83898x88, 83904x77, 81479x13 83891 Barth Syndrome, Carrier BARCAR 82536 81406 83891, 83898, 83904x2 Barth Syndrome, Initial Patient BARINI 82535 81406 83891, 83898, 83904x9 Bartonella PCR, Tissue TBART 87924 87471 83898x4, 83890, 83894 B-Cell Clonality Using BIOMED-2 PCR Primers BCBMD 87904 81261, 83891, 83900, 83909x5, 83898x3, 83901x2, 81264 83912, 81261, 81264 BCL 2 mbr (PCR) BCL2 81099 81401 81401, 83890, 83898, 83894, 83912 BCR/ABL Kinase Domain Mutation Analysis KINASE 84529 81403 83891, 83898, 83902, 83904x4, -
The Role of Clpx in Erythropoietic Protoporphyria
hematol transfus cell ther. 2018;40(2):182–188 Hematology, Transfusion and Cell Therapy www.rbhh.org Review article The role of ClpX in erythropoietic protoporphyria Jared C. Whitman, Barry H. Paw a, Jacky Chung ∗ Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, United States article info abstract Article history: Hemoglobin is an essential biological component of human physiology and its production Received 28 February 2018 in red blood cells relies upon proper biosynthesis of heme and globin protein. Disruption in Accepted 2 March 2018 the synthesis of these precursors accounts for a number of human blood disorders found Available online 28 March 2018 in patients. Mutations in genes encoding heme biosynthesis enzymes are associated with a broad class of metabolic disorders called porphyrias. In particular, one subtype – erythro- Keywords: poietic protoporphyria – is caused by the accumulation of protoporphyrin IX. Erythropoietic Heme biosynthesis enzymes protoporphyria patients suffer from photosensitivity and a higher risk of liver failure, which Porphyria is the principle cause of morbidity and mortality. Approximately 90% of these patients carry Erythropoietic protoporphyria loss-of-function mutations in the enzyme ferrochelatase (FECH), while 5% of cases are asso- ClpXP ciated with activating mutations in the C-terminus of ALAS2. Recent work has begun to ALAS gene uncover novel mechanisms of heme regulation that may account for the remaining 5% of cases with previously unknown genetic basis. One erythropoietic protoporphyria family has been identified with inherited mutations in the AAA+ protease ClpXP that regulates ALAS activity. In this review article, recent findings on the role of ClpXP as both an activating unfoldase and degrading protease and its impact on heme synthesis will be discussed. -
GATA Transcription Factors Directly Regulate the Parkinson's
GATA transcription factors directly regulate the Parkinson’s disease-linked gene ␣-synuclein Clemens R. Scherzer*†‡, Jeffrey A. Grass§, Zhixiang Liao*, Imelda Pepivani*, Bin Zheng*, Aron C. Eklund*, Paul A. Ney¶, Juliana Ngʈ, Meghan McGoldrick*, Brit Mollenhauer*, Emery H. Bresnick†§**, and Michael G. Schlossmacher*†ʈ†† *Center for Neurologic Diseases, Harvard Medical School and Brigham and Women’s Hospital, Cambridge, MA 02139; §Department of Pharmacology, University of Wisconsin School of Medicine and Public Health, Madison, WI 53706; ¶Department of Biochemistry, St. Jude Children’s Research Hospital, Memphis, TN 38105; and ʈDivision of Neurosciences, Ottawa Health Research Institute, University of Ottawa, Ottawa, ON, Canada K1H 8M5 Edited by Gregory A. Petsko, Brandeis University, Waltham, MA, and approved May 27, 2008 (received for review March 13, 2008) Increased ␣-synuclein gene (SNCA) dosage due to locus multipli- Results cation causes autosomal dominant Parkinson’s disease (PD). Vari- SNCA mRNA and Protein Are Highly Abundant in Human and Mouse ation in SNCA expression may be critical in common, genetically Erythroid Cells. Relative SNCA mRNA abundance was determined complex PD but the underlying regulatory mechanism is unknown. by comparing the SNCA mRNA abundance in each target tissue to We show that SNCA and the heme metabolism genes ALAS2, FECH, the calibrator Universal Human Reference RNA (Fig. 1A). SNCA and BLVRB form a block of tightly correlated gene expression in 113 mRNA abundance was high in whole blood from human donors samples of human blood, where SNCA naturally abounds (vali- (relative abundance 10 {range 6.6–15.3}) with very high levels in ؊ ؊ ؊ -؋ 10 11, 1.8 ؋ 10 10, and 6.6 ؋ 10 5).