How Does Stathmin Destabilize Microtubules? a Root of Consciousness and Alzheimer’S Disease
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The Cytoskeleton in Cell-Autonomous Immunity: Structural Determinants of Host Defence
Mostowy & Shenoy, Nat Rev Immunol, doi:10.1038/nri3877 The cytoskeleton in cell-autonomous immunity: structural determinants of host defence Serge Mostowy and Avinash R. Shenoy Medical Research Council Centre of Molecular Bacteriology and Infection (CMBI), Imperial College London, Armstrong Road, London SW7 2AZ, UK. e‑mails: [email protected] ; [email protected] doi:10.1038/nri3877 Published online 21 August 2015 Abstract Host cells use antimicrobial proteins, pathogen-restrictive compartmentalization and cell death in their defence against intracellular pathogens. Recent work has revealed that four components of the cytoskeleton — actin, microtubules, intermediate filaments and septins, which are well known for their roles in cell division, shape and movement — have important functions in innate immunity and cellular self-defence. Investigations using cellular and animal models have shown that these cytoskeletal proteins are crucial for sensing bacteria and for mobilizing effector mechanisms to eliminate them. In this Review, we highlight the emerging roles of the cytoskeleton as a structural determinant of cell-autonomous host defence. 1 Mostowy & Shenoy, Nat Rev Immunol, doi:10.1038/nri3877 Cell-autonomous immunity, which is defined as the ability of a host cell to eliminate an invasive infectious agent, is a first line of defence against microbial pathogens 1 . It relies on antimicrobial proteins, specialized degradative compartments and programmed host cell death 1–3 . Cell- autonomous immunity is mediated by tiered innate immune signalling networks that sense microbial pathogens and stimulate downstream pathogen elimination programmes. Recent studies on host– microorganism interactions show that components of the host cell cytoskeleton are integral to the detection of bacterial pathogens as well as to the mobilization of antibacterial responses (FIG. -
How Protein Materials Balance Strength, Robustness and Adaptability
How Protein Materials Balance Strength, Robustness And Adaptability The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Buehler, Markus J., and Yu Ching Yung. “How protein materials balance strength, robustness, and adaptability.” HFSP Journal 4.1 (2010): 26-40. As Published http://dx.doi.org/10.2976/1.3267779 Publisher American Institute of Physics Version Author's final manuscript Citable link http://hdl.handle.net/1721.1/67894 Terms of Use Attribution-Noncommercial-Share Alike 3.0 Unported Detailed Terms http://creativecommons.org/licenses/by-nc-sa/3.0/ How protein materials balance strength, robustness and adaptability Markus J. Buehler1,2,3*, Yu Ching Yung1 1Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, 77 Massachusetts Ave. Room 1-235A&B, Cambridge, MA, USA 2Center for Materials Science and Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA, USA 3Center for Computational Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA, USA * E-mail: [email protected], Lab URL: http://web.mit.edu/mbuehler/www/ Abstract: Proteins form the basis of a wide range of biological materials such as hair, skin, bone, spider silk or cells, which play an important role in providing key functions to biological systems. The focus of this article is to discuss how protein materials are capable of balancing multiple, seemingly incompatible properties such as strength, robustness and adaptability. Here we review bottom-up materiomics studies focused on the mechanical behavior of protein materials at multiple scales, from nano to macro. -
Universidade Estadual De Campinas Instituto De Biologia
UNIVERSIDADE ESTADUAL DE CAMPINAS INSTITUTO DE BIOLOGIA VERÔNICA APARECIDA MONTEIRO SAIA CEREDA O PROTEOMA DO CORPO CALOSO DA ESQUIZOFRENIA THE PROTEOME OF THE CORPUS CALLOSUM IN SCHIZOPHRENIA CAMPINAS 2016 1 VERÔNICA APARECIDA MONTEIRO SAIA CEREDA O PROTEOMA DO CORPO CALOSO DA ESQUIZOFRENIA THE PROTEOME OF THE CORPUS CALLOSUM IN SCHIZOPHRENIA Dissertação apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do Título de Mestra em Biologia Funcional e Molecular na área de concentração de Bioquímica. Dissertation presented to the Institute of Biology of the University of Campinas in partial fulfillment of the requirements for the degree of Master in Functional and Molecular Biology, in the area of Biochemistry. ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA DISSERTAÇÃO DEFENDIDA PELA ALUNA VERÔNICA APARECIDA MONTEIRO SAIA CEREDA E ORIENTADA PELO DANIEL MARTINS-DE-SOUZA. Orientador: Daniel Martins-de-Souza CAMPINAS 2016 2 Agência(s) de fomento e nº(s) de processo(s): CNPq, 151787/2F2014-0 Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Saia-Cereda, Verônica Aparecida Monteiro, 1988- Sa21p O proteoma do corpo caloso da esquizofrenia / Verônica Aparecida Monteiro Saia Cereda. – Campinas, SP : [s.n.], 2016. Orientador: Daniel Martins de Souza. Dissertação (mestrado) – Universidade Estadual de Campinas, Instituto de Biologia. 1. Esquizofrenia. 2. Espectrometria de massas. 3. Corpo caloso. -
UCSD MOLECULE PAGES Doi:10.6072/H0.MP.A002549.01 Volume 1, Issue 2, 2012 Copyright UC Press, All Rights Reserved
UCSD MOLECULE PAGES doi:10.6072/H0.MP.A002549.01 Volume 1, Issue 2, 2012 Copyright UC Press, All rights reserved. Review Article Open Access WAVE2 Tadaomi Takenawa1, Shiro Suetsugu2, Daisuke Yamazaki3, Shusaku Kurisu1 WASP family verprolin-homologous protein 2 (WAVE2, also called WASF2) was originally identified by its sequence similarity at the carboxy-terminal VCA (verprolin, cofilin/central, acidic) domain with Wiskott-Aldrich syndrome protein (WASP) and N-WASP (neural WASP). In mammals, WAVE2 is ubiquitously expressed, and its two paralogs, WAVE1 (also called suppressor of cAMP receptor 1, SCAR1) and WAVE3, are predominantly expressed in the brain. The VCA domain of WASP and WAVE family proteins can activate the actin-related protein 2/3 (Arp2/3) complex, a major actin nucleator in cells. Proteins that can activate the Arp2/3 complex are now collectively known as nucleation-promoting factors (NPFs), and the WASP and WAVE families are a founding class of NPFs. The WAVE family has an amino-terminal WAVE homology domain (WHD domain, also called the SCAR homology domain, SHD) followed by the proline-rich region that interacts with various Src-homology 3 (SH3) domain proteins. The VCA domain located at the C-terminus. WAVE2, like WAVE1 and WAVE3, constitutively forms a huge heteropentameric protein complex (the WANP complex), binding through its WHD domain with Abi-1 (or its paralogs, Abi-2 and Abi-3), HSPC300 (also called Brick1), Nap1 (also called Hem-2 and NCKAP1), Sra1 (also called p140Sra1 and CYFIP1; its paralog is PIR121 or CYFIP2). The WANP complex is recruited to the plasma membrane by cooperative action of activated Rac GTPases and acidic phosphoinositides. -
Essential for Protein Regulation
CYTOSKELETON NEWS NEWS FROM CYTOSKELETON INC. Rac GTP Rho GTPases Control Cell Migration P-Rex1 Related Publications Fli2 Rac Research Tools January GDP 2020 Tiam1 Rac GTP v Rho GTPases Control Cell Migration Meetings Directed cell migration depends upon integrin-containing deposition of the ECM protein fibronectin which supports Cold Spring Harbor focal adhesions connecting the cell’s actin cytoskeleton nascent lamellipodia formation. The fibronectin binds to Conference - Systems with the extracellular matrix (ECM) and transmitting integrin and serves as an ECM substrate for Rac1-dependent 18 Biology: Global Regulation of mechanical force. Focal adhesion formation and subsequent directional migration . N e Gene Expression migration require dynamic re-organization of actin-based w contractile fibers and protrusions at a cell’s trailing and Cell Directionality s March 11-14th leading edges, respectively, in response to extracellular Cold Spring Harbor, NY guidance cues. Migration is essential for healthy cell Rho-family-mediated remodeling of the actin cytoskeleton is Cytoskeleton Supported (and organism) development, growth, maturation, and necessary for the cell’s directional response to extracellular physiological responses to diseases, injuries, and/or immune guidance cues (e.g., chemokines, matrix-released molecules, system challenges. Various pathophysiological conditions growth factors, etc). The response is either a migration Cold Spring Harbor (e.g., cancer, fibrosis, infections, chronic inflammation) usurp toward or away from environmental cues and this directional Conference -Neuronal and/or compromise the dynamic physiological processes response requires dynamic reorganization of the actin Circuts underlying migration1-5. cytoskeleton. A central question is the identity of the March 18-21st signaling molecule (or molecules) that relays the extracellular 1-4 Cold Spring Harbor, NY Rho-family GTPases (e.g., RhoA, Rac1, Cdc42, and RhoJ) act information to the actin cytoskeleton . -
Mutations in Desmin's Carboxy-Terminal “Tail” Domain Severely Modify Filament and Network Mechanics
doi:10.1016/j.jmb.2010.02.024 J. Mol. Biol. (2010) 397, 1188–1198 Available online at www.sciencedirect.com Mutations in Desmin's Carboxy-Terminal “Tail” Domain Severely Modify Filament and Network Mechanics Harald Bär1,2†, Michael Schopferer3†, Sarika Sharma1,2, Bernhard Hochstein3, Norbert Mücke4, Harald Herrmann2 and Norbert Willenbacher3⁎ 1Department of Cardiology, Inherited mutations in the gene coding for the intermediate filament protein University of Heidelberg, desmin have been demonstrated to cause severe skeletal and cardiac 69120 Heidelberg, Germany myopathies. Unexpectedly, some of the mutated desmins, in particular those carrying single amino acid alterations in the non-α-helical carboxy- 2Group Functional Architecture terminal domain (“tail”), have been demonstrated to form apparently of the Cell, German Cancer normal filaments both in vitro and in transfected cells. Thus, it is not clear if Research Center, filament properties are affected by these mutations at all. For this reason, we 69120 Heidelberg, Germany performed oscillatory shear experiments with six different desmin “tail” 3Institute of Mechanical Process mutants in order to characterize the mesh size of filament networks and Engineering and Mechanics, their strain stiffening properties. Moreover, we have carried out high- University of Karlsruhe, frequency oscillatory squeeze flow measurements to determine the bending Gotthard-Franz-Straße 3, 76131 stiffness of the respective filaments, characterized by the persistence length Karlsruhe, Germany lp. Interestingly, mesh size was not altered for the mutant filament 4 networks, except for the mutant DesR454W, which apparently did not Division of Biophysics of form proper filament networks. Also, the values for bending stiffness were Macromolecules, German “ ” – μ in the same range for both the tail mutants (lp =1.0 2.0 m) and the wild- Cancer Research Center, μ type desmin (lp =1.1±0.5 m). -
Conserved Microtubule–Actin Interactions in Cell Movement and Morphogenesis
REVIEW Conserved microtubule–actin interactions in cell movement and morphogenesis Olga C. Rodriguez, Andrew W. Schaefer, Craig A. Mandato, Paul Forscher, William M. Bement and Clare M. Waterman-Storer Interactions between microtubules and actin are a basic phenomenon that underlies many fundamental processes in which dynamic cellular asymmetries need to be established and maintained. These are processes as diverse as cell motility, neuronal pathfinding, cellular wound healing, cell division and cortical flow. Microtubules and actin exhibit two mechanistic classes of interactions — regulatory and structural. These interactions comprise at least three conserved ‘mechanochemical activity modules’ that perform similar roles in these diverse cell functions. Over the past 35 years, great progress has been made towards under- crosstalk occurs in processes that require dynamic cellular asymme- standing the roles of the microtubule and actin cytoskeletal filament tries to be established or maintained to allow rapid intracellular reor- systems in mechanical cellular processes such as dynamic shape ganization or changes in shape or direction in response to stimuli. change, shape maintenance and intracellular organelle movement. Furthermore, the widespread occurrence of these interactions under- These functions are attributed to the ability of polarized cytoskeletal scores their importance for life, as they occur in diverse cell types polymers to assemble and disassemble rapidly, and to interact with including epithelia, neurons, fibroblasts, oocytes and early embryos, binding proteins and molecular motors that mediate their regulated and across species from yeast to humans. Thus, defining the mecha- movement and/or assembly into higher order structures, such as radial nisms by which actin and microtubules interact is key to understand- arrays or bundles. -
Structure and Mechanics of Proteins from Single Molecules to Cells
University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations Summer 2009 Structure and Mechanics of Proteins from Single Molecules to Cells Andre E. Brown University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Biological and Chemical Physics Commons Recommended Citation Brown, Andre E., "Structure and Mechanics of Proteins from Single Molecules to Cells" (2009). Publicly Accessible Penn Dissertations. 9. https://repository.upenn.edu/edissertations/9 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/9 For more information, please contact [email protected]. Structure and Mechanics of Proteins from Single Molecules to Cells Abstract Physical factors drive evolution and play important roles in motility and attachment as well as in differentiation. As animal cells adhere to survive, they generate force and “feel” various mechanical features of their surroundings and respond to externally applied forces. This mechanosensitivity requires a substrate for cells to adhere to and a mechanism for cells to apply force, followed by a cellular response to the mechanical properties of the substrate. We have taken an outside-in approach to characterize several aspects of cellular mechanosensitivity. First, we used single molecule force spectroscopy to measure how fibrinogen, an extracellular matrix protein that forms the scaffold of blood clots, responds to applied force and found that it rapidly unfolds in 23 nm steps at forces around 100 pN. Second, we used tensile testing to measure the force-extension behavior of fibrin gels and found that they behave almost linearly to strains of over 100%, have extensibilities of 170 ± 15 %, and undergo a large volume decrease that corresponds to a large and negative peak in compressibility at low strain, which indicates a structural transition. -
Absence of NEFL in Patient-Specific Neurons in Early-Onset Charcot-Marie-Tooth Neuropathy Markus T
ARTICLE OPEN ACCESS Absence of NEFL in patient-specific neurons in early-onset Charcot-Marie-Tooth neuropathy Markus T. Sainio, MSc, Emil Ylikallio, MD, PhD, Laura M¨aenp¨a¨a, MSc, Jenni Lahtela, PhD, Pirkko Mattila, PhD, Correspondence Mari Auranen, MD, PhD, Johanna Palmio, MD, PhD, and Henna Tyynismaa, PhD Dr. Tyynismaa [email protected] Neurol Genet 2018;4:e244. doi:10.1212/NXG.0000000000000244 Abstract Objective We used patient-specific neuronal cultures to characterize the molecular genetic mechanism of recessive nonsense mutations in neurofilament light (NEFL) underlying early-onset Charcot- Marie-Tooth (CMT) disease. Methods Motor neurons were differentiated from induced pluripotent stem cells of a patient with early- onset CMT carrying a novel homozygous nonsense mutation in NEFL. Quantitative PCR, protein analytics, immunocytochemistry, electron microscopy, and single-cell transcriptomics were used to investigate patient and control neurons. Results We show that the recessive nonsense mutation causes a nearly total loss of NEFL messenger RNA (mRNA), leading to the complete absence of NEFL protein in patient’s cultured neurons. Yet the cultured neurons were able to differentiate and form neuronal networks and neuro- filaments. Single-neuron gene expression fingerprinting pinpointed NEFL as the most down- regulated gene in the patient neurons and provided data of intermediate filament transcript abundancy and dynamics in cultured neurons. Blocking of nonsense-mediated decay partially rescued the loss of NEFL mRNA. Conclusions The strict neuronal specificity of neurofilament has hindered the mechanistic studies of re- cessive NEFL nonsense mutations. Here, we show that such mutation leads to the absence of NEFL, causing childhood-onset neuropathy through a loss-of-function mechanism. -
Stathmin Is Overexpressed in Malignant Mesothelioma
ANTICANCER RESEARCH 27: 39-44 (2007) Stathmin is Overexpressed in Malignant Mesothelioma JAE Y. KIM1, CHANSONETTE HARVARD1, LIANG YOU1, ZHIDONG XU1, KRISTOPHER KUCHENBECKER1, RICK BAEHNER2 and DAVID JABLONS1 1Thoracic Oncology Laboratory, UCSF Comprehensive Cancer Center, San Francisco, CA 94115; 2Department of Pathology, UCSF, San Francisco, CA 94115, U.S.A. Abstract. Background: Malignant pleural mesothelioma is a unclear (7, 8). Unlike many other epithelial cancers, the highly aggressive cancer, with low overall survival. The activation of ras genes and inactivation of Rb and p53 genes pathogenesis of mesothelioma is poorly understood. The aim of do not seem to be necessary for the development of this study was to identify potential genes overexpressed in mesothelioma (9, 10). Alterations of several molecular mesothelioma. Materials and Methods: A cDNA microarray was pathways, including epidermal growth factor receptor, cell used to identify potential genes that are activated in mesothelioma cycle regulatory genes, and developmental pathways have cell lines. Overexpression of stathmin, a cytosolic protein that been linked to mesothelioma (11, 12). There is also regulates microtubule dynamics, was found. RT-PCR, Western evidence that Simian virus 40 (SV40) may contribute to the blot, and immunohistochemistry were used to confirm develop of mesothelioma, but the exact genetic alterations overexpression in both cell lines and tumor samples. Results: leading to mesothelioma remain unknown (11, 13). Using RT-PCR and Western blot, stathmin overexpression was The aim of this study was to identify potential genes confirmed in seven mesothelioma cell lines. Increased stathmin involved in the pathogenesis of mesothelioma. protein expression was also found in seven out of eight mesothelioma tumor samples. -
ERIN D. GOLEY, Ph.D. Curriculum Vitae
Curriculum vitae Goley, Erin D. ERIN D. GOLEY, Ph.D. Curriculum Vitae DEMOGRAPHIC INFORMATION: Professional Appointment Assistant Professor, Department of Biological Chemistry Johns Hopkins University School of Medicine 08/2011 – current Personal Data Laboratory address: 725 N. Wolfe Street, 520 WBSB Baltimore, MD 21205 Office Phone: 410-502-4931 Lab Phone: 410-955-2361 FAX: 410-955-5759 e-mail: [email protected] Education and Training 1994-1998 BA/Hood College, Frederick, MD Biochemistry and Maths 2000-2006 PhD/University of California, Berkeley, CA Molecular and Cell Biology 2006-2011 Postdoc/Stanford University, Stanford, CA Bacterial Cell Biology Professional Experience 1997-2000 Laboratory Technician USDA, Ft Detrick, MD 1997 NSF Undergrad Fellow University of Utah, Salt Lake City, UT RESEARCH ACTIVITIES: Peer Reviewed Publications 1) Tooley PW, Goley ED, Carras MM, Frederick RD, Weber EL, Kuldau GA. (2001) Characterization of Claviceps species pathogenic on sorghum by sequence analysis of the beta- tubulin gene intron 3 region and EF-1alpha gene intron 4. Mycologia. 93: 541-551. 2) Skoble J, Auerbuch V, Goley ED, Welch MD, Portnoy DA. (2001) Pivotal role of VASP in Arp2/3 complex-mediated actin nucleation, actin branch-formation, and Listeria monocytogenes motility. J Cell Biol. 155:89-100. 3) Gournier H, Goley ED, Niederstrasser H, Trinh T, Welch MD. (2001) Reconstitution of human Arp2/3 complex reveals critical roles of individual subunits in complex structure and activity. Mol Cell. 8:1041-52. 4) Tooley PW, Goley ED, Carras MM, O'Neill NR. (2002) AFLP comparisons among Claviceps africana isolates from the United States, Mexico, Africa, Australia, India, and Japan. -
Ftsz Filaments Have the Opposite Kinetic Polarity of Microtubules
FtsZ filaments have the opposite kinetic polarity of microtubules Shishen Dua, Sebastien Pichoffa, Karsten Kruseb,c,d, and Joe Lutkenhausa,1 aDepartment of Microbiology, Molecular Genetics, and Immunology, University of Kansas Medical Center, Kansas City, KS 66160; bDepartment of Biochemistry, University of Geneva, 1211 Geneva, Switzerland; cDepartment of Theoretical Physics, University of Geneva, 1211 Geneva, Switzerland; and dThe National Center of Competence in Research Chemical Biology, University of Geneva, 1211 Geneva, Switzerland Contributed by Joe Lutkenhaus, August 29, 2018 (sent for review July 11, 2018; reviewed by Jan Löwe and Jie Xiao) FtsZ is the ancestral homolog of tubulin and assembles into the Z Since FtsZ filaments treadmill, longitudinal interface mutants ring that organizes the division machinery to drive cell division of FtsZ should have different effects on assembly. Interface in most bacteria. In contrast to tubulin that assembles into 13 mutants that can add to the growing end but prevent further stranded microtubules that undergo dynamic instability, FtsZ growth should be toxic to assembly and thus cell division at assembles into single-stranded filaments that treadmill to distrib- substoichiometric levels, whereas interface mutants that cannot ute the peptidoglycan synthetic machinery at the septum. Here, add onto filaments should be much less toxic. Redick et al. (22) using longitudinal interface mutants of FtsZ, we demonstrate observed that some amino acid substitutions at the bottom end that the kinetic polarity of FtsZ filaments is opposite to that of of FtsZ were toxic, whereas substitutions at the top end were not. microtubules. A conformational switch accompanying the assem- – bly of FtsZ generates the kinetic polarity of FtsZ filaments, which Furthermore, expression of just the N-terminal domain (1 193, explains the toxicity of interface mutants that function as a capper top end), but not the C-terminal domain of FtsZ, showed some and reveals the mechanism of cooperative assembly.