Comparative Study of Vent and Seep Macrofaunal Communities in the Guaymas Basin
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Diversity of Bacteria and Archaea in the Deep-Sea Low-Temperature Hydrothermal Sulfide Chimney of the Northeastern Pacific Ocean
African Journal of Biotechnology Vol. 11(2), pp. 337-345, 5 January, 2012 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB11.2692 ISSN 1684–5315 © 2012 Academic Journals Full Length Research Paper Diversity of bacteria and archaea in the deep-sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean Xia Ding1*, Xiao-Jue Peng1#, Xiao-Tong Peng2 and Huai-Yang Zhou3 1College of Life Sciences and Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, Nanchang 330031, China. 2Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China. 3National Key Laboratory of Marine Geology, Tongji University, Shanghai 200092, China. Accepted 4 November, 2011 Our knowledge of the diversity and role of hydrothermal vents microorganisms has considerably expanded over the past decade, while little is known about the diversity of microorganisms in low-temperature hydrothermal sulfide chimney. In this study, denaturing gradient gel electrophoresis (DGGE) and 16S rDNA sequencing were used to examine the abundance and diversity of microorganisms from the exterior to the interior of the deep sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean. DGGE profiles revealed that both bacteria and archaea could be examined in all three zones of the chimney wall and the compositions of microbial communities within different zones were vastly different. Overall, for archaea, cell abundance was greatest in the outermost zone of the chimney wall. For bacteria, there was no significant difference in cell abundance among three zones. In addition, phylogenetic analysis revealed that Verrucomicrobia and Deltaproteobacteria were the predominant bacterial members in exterior zone, beta Proteobacteria were the dominant members in middle zone, and Bacillus were the abundant microorganisms in interior zone. -
RECORDS of the HAWAII BIOLOGICAL SURVEY for 1995 Part 2: Notes1
RECORDS OF THE HAWAII BIOLOGICAL SURVEY FOR 1995 Part 2: Notes1 This is the second of two parts to the Records of the Hawaii Biological Survey for 1995 and contains the notes on Hawaiian species of plants and animals including new state and island records, range extensions, and other information. Larger, more compre- hensive treatments and papers describing new taxa are treated in the first part of this Records [Bishop Museum Occasional Papers 45]. New Hawaiian Pest Plant Records for 1995 PATRICK CONANT (Hawaii Dept. of Agriculture, Plant Pest Control Branch, 1428 S King St, Honolulu, HI 96814) Fabaceae Ulex europaeus L. New island record On 6 October 1995, Hawaii Department of Land and Natural Resources, Division of Forestry and Wildlife employee C. Joao submitted an unusual plant he found while work- ing in the Molokai Forest Reserve. The plant was identified as U. europaeus and con- firmed by a Hawaii Department of Agriculture (HDOA) nox-A survey of the site on 9 October revealed an infestation of ca. 19 m2 at about 457 m elevation in the Kamiloa Distr., ca. 6.2 km above Kamehameha Highway. Distribution in Wagner et al. (1990, Manual of the flowering plants of Hawai‘i, p. 716) listed as Maui and Hawaii. Material examined: MOLOKAI: Molokai Forest Reserve, 4 Dec 1995, Guy Nagai s.n. (BISH). Melastomataceae Miconia calvescens DC. New island record, range extensions On 11 October, a student submitted a leaf specimen from the Wailua Houselots area on Kauai to PPC technician A. Bell, who had the specimen confirmed by David Lorence of the National Tropical Botanical Garden as being M. -
Cold Seep Benthic Communities in Japan Subduction Zones: Spatial Organization, Trophic Strategies and Evidence for Temporal Evolution*
MARINE ECOLOGY - PROGRESS SERIES Vol. 40: 115-126. 1987 Published October 7 Mar. Ecol. Prog. Ser. Cold seep benthic communities in Japan subduction zones: spatial organization, trophic strategies and evidence for temporal evolution* S. Kim Juniper", Myriam Sibuet IFREMER, Centre de Brest. BP 337. F-29273 Brest Cedex. France ABSTRACT: Submersible exploration of the Japan subduction zones has revealed benthic communities dominated by clams (Calyptogena spp.) around sed~mentporewater seeps at depths from 3850 to 6000 m. Photographic and video records were used to produce microcartographlc reconstructions of 3 contrasting cold seep sites. Spatial and abundance relations of megafauna lead us to propose several hypotheses regard~ngthe ecological functioning of these cold seep communities. We dlst~nguish between the likely direct use of reducing substances in venting fluids by Calyptogena-bacteria symbioses and indirect usage by accompanying abyssal species not known to harbour symbionts. Microdistribution and known or presumed feedmg modes of the accompanying species indicate 2 different sources of organic matter enrichment within cold seep sites: organic debris originating from bivalve colonies, and enrichment of extensive areas of surrounding surface sediments where weaker, more hffuse porewater seepage may support chemosynthetic production by free-living bacteria. The occurrence of colony-like groupings of empty Calyptogena valves indicates that cold seeps are ephemeral, with groups of living clams, mixed living and dead clams, and empty dissolving shells marlung the course of a cycle of porewater venting and offering clues to the recent history of cold seep activity. INTRODUCTION al. 1985). One of the bivalve species from this area has been shown to harbour symbiotic bacteria in its gill The discovery of deep-sea hydrothermal vents has tissue and to oxidise methane (Childress et al. -
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
FORMATION of HABITABLE WORLDS and FATE of HABITABLE ENVIRONMENTS 6:00 P.M
45th Lunar and Planetary Science Conference (2014) sess726.pdf Thursday, March 20, 2014 [R726] POSTER SESSION: FORMATION OF HABITABLE WORLDS AND FATE OF HABITABLE ENVIRONMENTS 6:00 p.m. Town Center Exhibit Area Johnson T. A. Park A. Hand K. P. POSTER LOCATION #473 The Workman-Reynolds Effect: An Investigation of the Ice-Water Interface of Dilute Salt Solutions [#1672] We report on experiments on the voltage potential that results from rapidly freezing dilute aqueous solutions. These results have application to icy satellites. Taylor A. R. Olsen A. A. Hausrath E. M. POSTER LOCATION #474 Serpentinite Dissolution: An Analog to Mantle-Ocean Interaction on Europa [#1903] Laboratory-based dissolution experiments between serpentinite rock and a variety of acids represent mantle-ocean interaction on the jovian moon, Europa. Hausrath E. M. Adcock C. T. Elwood Madden M. E. Gainey S. R. Olsen A. A. et al. POSTER LOCATION #475 Using Geochemical Kinetics to Interpret Potential Habitability [#2376] Geochemical kinetics can help shed light on factors affecting habitability, including water, release of nutrients, redox, pH, temperature, and ionic strength. Som S. M. Fristad K. E. Hoehler T. M. POSTER LOCATION #476 An Integrative Approach to Assessing Habitability of H2 Metabolisms in Hydrothermal Springs [#2828] We present an ongoing project that surveys H2 from springs sourced in rocks of varying silica content and in parallel investigate habitability numerically. Djordjevic S. Mickol R. L. Kral T. A. POSTER LOCATION #477 Simulating Martian Conditions: Methanogen Survivability During Freeze-Thaw Cycles [#2539] Methanogens are obligate anaerobes that tolerate a wide range of conditions. It is proposed that these Archaea are able to persist in a martian environment. -
A New Genus and Species of Cataegidae (Gastropoda: Seguenzioidea) from Eastern Pacific Ocean Methane Seeps
A. WAREN & G. W. RO USE NOVAPEX 17(4): 59-66, 10 decembre 2016 A new genus and species of Cataegidae (Gastropoda: Seguenzioidea) from eastern Pacific Ocean methane seeps Anders WAREN Swedish Museum of Natural History Box 50007 SE-10405 Stockholm Sweden [email protected] Greg W. ROUSE Scripps Institution of Oceanography University of California, San Diego La Jolla, CA, 92093 USA [email protected] KEYWORDS. Seguenzioidea, Cataegidae, methane seep, Costa Rica, new genus, new species, deep-sea ABSTRACT. A new genus, Kanoia, n. gen., is erected for an unnamed seguenzioid gastropod species, now known from several methane seeps off California, in Gulf of California and off Costa Rica, and named Kanoia myronfeinbergi n. sp. It differs from K. meroglypta (n. comb.) a Caribbean species, mainly in having fewer spiral ridges on the shell, a lower spire and more distinct crenulation on the apical spiral cords. INTRODUCTION exploration of deep-sea methane cold seeps off the Central and North American west coasts, with the aid During the last few decades there has been an of manned submersibles or remotely controlled explosive development in two fields which are of vehicles (ROVs). All specimens used for this paper concern for this paper. One is the interest in the fauna are listed in Table 1. Some material used for in various kinds of springs in the deep-sea with water comparison has been collected during the last decades containing energy-rich compounds (hydrothermal of French exploration of the bathyal fauna in the vents and methane seeps) and "food-falls" of all kinds, South Pacific, led by Bertrand Richer de Forges (then from whales to squid jaws and Casuarina cones. -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
Susceptibility of Archaea to Antimicrobial Agents: Applications to Clinical Microbiology
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector REVIEW 10.1111/j.1469-0691.2012.03913.x Susceptibility of archaea to antimicrobial agents: applications to clinical microbiology S. Khelaifia and M. Drancourt Unite´ de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 6236 IRD 3R198, Me´diterrane´e Infection, Faculte´ de Me´decine, Aix-marseille-Universite´, Marseille, France Abstract We herein review the state of knowledge regarding the in vitro and in vivo susceptibility of archaea to antimicrobial agents, including some new molecules. Indeed, some archaea colonizing the human microbiota have been implicated in diseases such as periodontopathy. Archaea are characterized by their broad-spectrum resistance to antimicrobial agents. In particular, their cell wall lacks peptidoglycan, making them resistant to antimicrobial agents interfering with peptidoglycan biosynthesis. Archaea are, however, susceptible to the pro- tein synthesis inhibitor fusidic acid and imidazole derivatives. Also, squalamine, an antimicrobial agent acting on the cell wall, proved effective against human methanogenic archaea. In vitro susceptibility data could be used to design protocols for the decontamination of complex microbiota and the selective isolation of archaea in anaerobic culture. Keywords: Antimicrobial agent, archaea, methanogenic archaea, microbiota, susceptibility testing Article published online: 23 May 2012 Clin Microbiol Infect 2012; 18: 841–848 Corresponding author: M. Drancourt, Unite´ des Rickettsies, Fa- culte´ de Me´decine, 27, Boulevard Jean Moulin-Cedex 5, France E-mail: [email protected] Methanogenic archaea (herein referred to as methano- Introduction gens) are the sole organisms producing methane from H2 +CO2 [6]. -
Reproduction of Gastropods from Vents on the East Pacific Rise and the Mid-Atlantic Ridge
JOBNAME: jsr 27#1 2008 PAGE: 1 OUTPUT: Friday March 14 03:55:15 2008 tsp/jsr/159953/27-1-19 View metadata, citation and similar papers at core.ac.uk brought to you by CORE Journal of Shellfish Research, Vol. 27, No. 1, 107–118, 2008. provided by Woods Hole Open Access Server REPRODUCTION OF GASTROPODS FROM VENTS ON THE EAST PACIFIC RISE AND THE MID-ATLANTIC RIDGE PAUL A. TYLER,1* SOPHIE PENDLEBURY,1 SUSAN W. MILLS,2 LAUREN MULLINEAUX,2 KEVIN J. ECKELBARGER,3 MARIA BAKER1 AND CRAIG M. YOUNG4 1National Oceanography Centre, Southampton, University of Southampton, Southampton SO14 3ZH, United Kingdom; 2Biology Department Woods Hole Oceanographic Institution, Woods Hole Massachusetts 02543; 3Darling Marine Center, University of Maine, 193 Clark’s Cove Road. Walpole, Maine 04573; 4Oregon Institute of Marine Biology, University of Oregon, Charleston, Oregon 97420 ABSTRACT The gametogenic biology is described for seven species of gastropod from hydrothermal vents in the East Pacific and from the Mid-Atlantic Ridge. Species of the limpet genus Lepetodrilus (Family Lepetodrilidae) had a maximum unfertilized oocyte size of <90 mm and there was no evidence of reproductive periodicity or spatial variation in reproductive pattern. Individuals showed early maturity with females undergoing gametogenesis at less than one third maximum body size. There was a power relationship between shell length and fecundity, with a maximum of ;1,800 oocytes being found in one individual, although individual fecundity was usually <1,000. Such an egg size might be indicative of planktotrophic larval development, but there was never any indication of shell growth in larvae from species in this genus. -
CINDY LEE VAN DOVER March 2017
CINDY LEE VAN DOVER March 2017 CONTACT INFORMATION Division of Marine Science and Conservation Duke University Marine Laboratory 135 Duke Marine Lab Road Beaufort NC 28516 Tel: 252-504-7655 Fax: 252-504-7648 [email protected] EDUCATION 1989 PhD Massachusetts Institute of Technology and Woods Hole Oceanographic Institution Joint Program in Biological Oceanography. Department of Biology, Woods Hole Oceanographic Institution. Dissertation Title: Chemosynthetic Communities in the Deep Sea: Ecological Studies. PhD. Advisor: J.F. Grassle 1985 MA University of California, Los Angeles; Ecology 1977 BS Cook College, Rutgers University; Environmental Science ACADEMIC POSITIONS 2016 Visiting Scientist, Université de Bretagne Occidentale 2006- Harvey W. Smith Professor, Division of Marine Science and Conservation, Duke University 2006-2016 Director, Duke University Marine Laboratory 2006-2016 Chair, Division of Marine Science and Conservation 2006-2014 Director, Certificate in Marine Science and Conservation Leadership 2005-2006 Associate Professor, Biology Department, College of William & Mary 2002-2005 Marjorie S. Curtis Associate Professor, Biology Department, College of William & Mary 2005 Instructor, Oregon Institute of Marine Biology, University of Oregon 2004 Fulbright Research Scholar, IFREMER, Centre de Brest, France 1998-2002 Assistant Professor, Biology Department, College of William & Mary 1995-1998 Science Director, West Coast National Undersea Research Center and Research Associate Professor, Institute of Marine Science, University of Alaska, Fairbanks; Visiting Investigator, Dept. Geology & Geophysics, WHOI 1994-1995 Mary Derrickson McCurdy Visiting Scholar, Duke University School of the Environment, Duke Marine Lab., Beaufort, NC 1992-1994 Visiting Investigator, Department of Marine Chemistry and Geochemistry, WHOI 1989-1992 Submersible Pilot, ALVIN Group and Post-Doctoral Investigator, Biology Department, WHOI. -
Cataegis, New Genus of Three New Species from the Continental Slope (Trochidae: Cataeginae New Subfamily)
THE NAUTILUS 101(3):111-116, 1987 Page 111 Cataegis, New Genus of Three New Species from the Continental Slope (Trochidae: Cataeginae New Subfamily) James H. McLean James F. Quinn, Jr. Los Angeles County Museum of Florida Department of Natural Natural History Resources 900 Exposition Blvd. Bureau of Marine Research Los Angeles, CA 90007, USA 100 Eighth Ave., S.E. St. Petersburg, FL 33701, USA ABSTRACT search, St. Petersburg); FSM (Florida State Museum, Uni versity of Florida, Gainesville); LACM (Los Angeles Cataegis new genus, type species C. toreuta new species, is County Museum of Natural History, Los Angeles); MCZ proposed to include three new species from continental slope depths (200-2,000 m): the type species and C. meroglypta from (Museum of Comparative Zoology, Harvard University, the Gulf of Mexico to Colombia, and C. celebesensis from Cambridge); MNHN (Museum National d'Histoire Na- Makassar Strait, Indonesia. Important shell characters are the turelle, Paris); TAMU (Invertebrate Collection, Texas prominent spiral cords, non-umbilicate base, and oblique ap A&M University, College Station); UMML (Rosenstiel erture. The radula is unique among the Trochidae in lacking School of Marine and Atmospheric Sciences, University the rachidian, having the first pair of laterals fused and un- of Miami, Coral Gables); USNM (U.S. National Museum cusped, and the first marginals enlarged. The gill is the ad of Natural History, Washington). vanced trochid type with well-developed afferent membrane. These characters do not correspond to an available subfamily; the new subfamily Cataeginae is therefore proposed. SYSTEMATICS Family Trochidae Cataeginae new subfamily INTRODUCTION Type genus: Cataegis new genus. -
A Problematic Zygopleuroid Gastropod Acanthostrophia Revisited 21
50 /Reihe A Series A Zitteliana An International Journal of Palaeontology and Geobiology Series A /Reihe A Mitteilungen der Bayerischen Staatssammlung für Paläontologie und Geologie 50Jubilee Volume An International Journal of Palaeontology and Geobiology München 2010 Zitteliana Zitteliana An International Journal of Palaeontology and Geobiology Series A/Reihe A Mitteilungen der Bayerischen Staatssammlung für Paläontologie und Geologie 50 CONTENTS/INHALT BABA SENOWBARI-DARYAN & MICHAELA BERNECKER Amblysiphonella agahensis nov. sp., and Musandamia omanica nov. gen., nov. sp. (Porifera) from the Upper Triassic of Oman 3 ALEXANDER NÜTZEL A review of the Triassic gastropod genus Kittliconcha BONARELLI, 1927 – implications for the phylogeny of Caenogastropoda 9 ANDRZEJ KAIM & MARIA ALESSANDRA CONTI A problematic zygopleuroid gastropod Acanthostrophia revisited 21 GERNOT ARP Ammonitenfauna und Stratigraphie des Grenzbereichs Jurensismergel/Opalinuston- Formation bei Neumarkt i.d. Opf. (oberstes Toarcium, Fränkische Alb) 25 VOLKER DIETZE Über Ammonites Humphriesianus umbilicus QUENSTEDT, 1886 an seiner Typus-Lokalität (östliche Schwäbische Alb, Südwestdeutschland) 55 VOLKER DIETZE, GÜNTER SCHWEIGERT, GERD DIETL, WOLFGANG AUER, WOLFGANG DANGELMAIER, ROGER FURZE, STEFAN GRÄBENSTEIN, MICHAEL KUTZ, ELMAR NEISSER, ERICH SCHNEIDER & DIETMAR SCHREIBER Rare Middle Jurassic ammonites of the families Erycitidae, Otoitidae and Stephanoceratidae from southern Germany 71 WOLFGANG WITT Late Miocene non-marine ostracods from the Lake Küçükçekmece region, Thrace (Turkey) 89 JÉRÔME PRIETO Note on the morphological variability of Keramidomys thaleri (Eomyidae, Mammalia) from Puttenhausen (North Alpine Foreland Basin, Germany) 103 MARTIN PICKFORD Additions to the DEHM collection of Siwalik hominoids, Pakistan: descriptions and interpretations 111 MICHAEL KRINGS, NORA DOTZLER, THOMAS N. TAYLOR & JEAN GALTIER Microfungi from the upper Visean (Mississippian) of central France: Structure and development of the sporocarp Mycocarpon cinctum nov.