Blinding in Clinical Trials: Seeing the Big Picture
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Introduction to Biostatistics
Introduction to Biostatistics Jie Yang, Ph.D. Associate Professor Department of Family, Population and Preventive Medicine Director Biostatistical Consulting Core Director Biostatistics and Bioinformatics Shared Resource, Stony Brook Cancer Center In collaboration with Clinical Translational Science Center (CTSC) and the Biostatistics and Bioinformatics Shared Resource (BB-SR), Stony Brook Cancer Center (SBCC). OUTLINE What is Biostatistics What does a biostatistician do • Experiment design, clinical trial design • Descriptive and Inferential analysis • Result interpretation What you should bring while consulting with a biostatistician WHAT IS BIOSTATISTICS • The science of (bio)statistics encompasses the design of biological/clinical experiments the collection, summarization, and analysis of data from those experiments the interpretation of, and inference from, the results How to Lie with Statistics (1954) by Darrell Huff. http://www.youtube.com/watch?v=PbODigCZqL8 GOAL OF STATISTICS Sampling POPULATION Probability SAMPLE Theory Descriptive Descriptive Statistics Statistics Inference Population Sample Parameters: Inferential Statistics Statistics: 흁, 흈, 흅… 푿ഥ , 풔, 풑ෝ,… PROPERTIES OF A “GOOD” SAMPLE • Adequate sample size (statistical power) • Random selection (representative) Sampling Techniques: 1.Simple random sampling 2.Stratified sampling 3.Systematic sampling 4.Cluster sampling 5.Convenience sampling STUDY DESIGN EXPERIEMENT DESIGN Completely Randomized Design (CRD) - Randomly assign the experiment units to the treatments -
Effect Size (ES)
Lee A. Becker <http://web.uccs.edu/lbecker/Psy590/es.htm> Effect Size (ES) © 2000 Lee A. Becker I. Overview II. Effect Size Measures for Two Independent Groups 1. Standardized difference between two groups. 2. Correlation measures of effect size. 3. Computational examples III. Effect Size Measures for Two Dependent Groups. IV. Meta Analysis V. Effect Size Measures in Analysis of Variance VI. References Effect Size Calculators Answers to the Effect Size Computation Questions I. Overview Effect size (ES) is a name given to a family of indices that measure the magnitude of a treatment effect. Unlike significance tests, these indices are independent of sample size. ES measures are the common currency of meta-analysis studies that summarize the findings from a specific area of research. See, for example, the influential meta- analysis of psychological, educational, and behavioral treatments by Lipsey and Wilson (1993). There is a wide array of formulas used to measure ES. For the occasional reader of meta-analysis studies, like myself, this diversity can be confusing. One of my objectives in putting together this set of lecture notes was to organize and summarize the various measures of ES. In general, ES can be measured in two ways: a) as the standardized difference between two means, or b) as the correlation between the independent variable classification and the individual scores on the dependent variable. This correlation is called the "effect size correlation" (Rosnow & Rosenthal, 1996). These notes begin with the presentation of the basic ES measures for studies with two independent groups. The issues involved when assessing ES for two dependent groups are then described. -
Experimentation Science: a Process Approach for the Complete Design of an Experiment
Kansas State University Libraries New Prairie Press Conference on Applied Statistics in Agriculture 1996 - 8th Annual Conference Proceedings EXPERIMENTATION SCIENCE: A PROCESS APPROACH FOR THE COMPLETE DESIGN OF AN EXPERIMENT D. D. Kratzer K. A. Ash Follow this and additional works at: https://newprairiepress.org/agstatconference Part of the Agriculture Commons, and the Applied Statistics Commons This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 4.0 License. Recommended Citation Kratzer, D. D. and Ash, K. A. (1996). "EXPERIMENTATION SCIENCE: A PROCESS APPROACH FOR THE COMPLETE DESIGN OF AN EXPERIMENT," Conference on Applied Statistics in Agriculture. https://doi.org/ 10.4148/2475-7772.1322 This is brought to you for free and open access by the Conferences at New Prairie Press. It has been accepted for inclusion in Conference on Applied Statistics in Agriculture by an authorized administrator of New Prairie Press. For more information, please contact [email protected]. Conference on Applied Statistics in Agriculture Kansas State University Applied Statistics in Agriculture 109 EXPERIMENTATION SCIENCE: A PROCESS APPROACH FOR THE COMPLETE DESIGN OF AN EXPERIMENT. D. D. Kratzer Ph.D., Pharmacia and Upjohn Inc., Kalamazoo MI, and K. A. Ash D.V.M., Ph.D., Town and Country Animal Hospital, Charlotte MI ABSTRACT Experimentation Science is introduced as a process through which the necessary steps of experimental design are all sufficiently addressed. Experimentation Science is defined as a nearly linear process of objective formulation, selection of experimentation unit and decision variable(s), deciding treatment, design and error structure, defining the randomization, statistical analyses and decision procedures, outlining quality control procedures for data collection, and finally analysis, presentation and interpretation of results. -
Observational Clinical Research
E REVIEW ARTICLE Clinical Research Methodology 2: Observational Clinical Research Daniel I. Sessler, MD, and Peter B. Imrey, PhD * † Case-control and cohort studies are invaluable research tools and provide the strongest fea- sible research designs for addressing some questions. Case-control studies usually involve retrospective data collection. Cohort studies can involve retrospective, ambidirectional, or prospective data collection. Observational studies are subject to errors attributable to selec- tion bias, confounding, measurement bias, and reverse causation—in addition to errors of chance. Confounding can be statistically controlled to the extent that potential factors are known and accurately measured, but, in practice, bias and unknown confounders usually remain additional potential sources of error, often of unknown magnitude and clinical impact. Causality—the most clinically useful relation between exposure and outcome—can rarely be defnitively determined from observational studies because intentional, controlled manipu- lations of exposures are not involved. In this article, we review several types of observa- tional clinical research: case series, comparative case-control and cohort studies, and hybrid designs in which case-control analyses are performed on selected members of cohorts. We also discuss the analytic issues that arise when groups to be compared in an observational study, such as patients receiving different therapies, are not comparable in other respects. (Anesth Analg 2015;121:1043–51) bservational clinical studies are attractive because Group, and the American Society of Anesthesiologists they are relatively inexpensive and, perhaps more Anesthesia Quality Institute. importantly, can be performed quickly if the required Recent retrospective perioperative studies include data O 1,2 data are already available. -
Statistical Power, Sample Size, and Their Reporting in Randomized Controlled Trials
Statistical Power, Sample Size, and Their Reporting in Randomized Controlled Trials David Moher, MSc; Corinne S. Dulberg, PhD, MPH; George A. Wells, PhD Objective.\p=m-\Todescribe the pattern over time in the level of statistical power and least 80% power to detect a 25% relative the reporting of sample size calculations in published randomized controlled trials change between treatment groups and (RCTs) with negative results. that 31% (22/71) had a 50% relative Design.\p=m-\Ourstudy was a descriptive survey. Power to detect 25% and 50% change, as statistically significant (a=.05, relative differences was calculated for the subset of trials with results in one tailed). negative Since its the of which a was used. Criteria were both publication, report simple two-group parallel design developed Freiman and has been cited to trial results as or and to the outcomes. colleagues2 classify positive negative identify primary more than 700 times, possibly indicating Power calculations were based on results from the primary outcomes reported in the seriousness with which investi¬ the trials. gators have taken the findings. Given Population.\p=m-\Wereviewed all 383 RCTs published in JAMA, Lancet, and the this citation record, one might expect an New England Journal of Medicine in 1975, 1980, 1985, and 1990. increase over time in the awareness of Results.\p=m-\Twenty-sevenpercent of the 383 RCTs (n=102) were classified as the consequences of low power in pub¬ having negative results. The number of published RCTs more than doubled from lished RCTs and, hence, an increase in 1975 to 1990, with the proportion of trials with negative results remaining fairly the reporting of sample size calcula¬ stable. -
NIH Definition of a Clinical Trial
UNIVERSITY OF CALIFORNIA, SAN DIEGO HUMAN RESEARCH PROTECTIONS PROGRAM NIH Definition of a Clinical Trial The NIH has recently changed their definition of clinical trial. This Fact Sheet provides information regarding this change and what it means to investigators. NIH guidelines include the following: “Correctly identifying whether a study is considered to by NIH to be a clinical trial is crucial to how [the investigator] will: Select the right NIH funding opportunity announcement for [the investigator’s] research…Write the research strategy and human subjects section of the [investigator’s] grant application and contact proposal…Comply with appropriate policies and regulations, including registration and reporting in ClinicalTrials.gov.” NIH defines a clinical trial as “A research study in which one or more human subjects are prospectively assigned to one or more interventions (which may include placebo or other control) to evaluate the effects of those interventions on health-related biomedical or behavioral outcomes.” NIH notes, “The term “prospectively assigned” refers to a pre-defined process (e.g., randomization) specified in an approved protocol that stipulates the assignment of research subjects (individually or in clusters) to one or more arms (e.g., intervention, placebo, or other control) of a clinical trial. And, “An ‘intervention’ is defined as a manipulation of the subject or subject’s environment for the purpose of modifying one or more health-related biomedical or behavioral processes and/or endpoints. Examples include: -
Should the Randomistas (Continue To) Rule?
Should the Randomistas (Continue to) Rule? Martin Ravallion Abstract The rising popularity of randomized controlled trials (RCTs) in development applications has come with continuing debates on the pros and cons of this approach. The paper revisits the issues. While RCTs have a place in the toolkit for impact evaluation, an unconditional preference for RCTs as the “gold standard” is questionable. The statistical case is unclear on a priori grounds; a stronger ethical defense is often called for; and there is a risk of distorting the evidence-base for informing policymaking. Going forward, pressing knowledge gaps should drive the questions asked and how they are answered, not the methodological preferences of some researchers. The gold standard is the best method for the question at hand. Keywords: Randomized controlled trials, bias, ethics, external validity, ethics, development policy JEL: B23, H43, O22 Working Paper 492 August 2018 www.cgdev.org Should the Randomistas (Continue to) Rule? Martin Ravallion Department of Economics, Georgetown University François Roubaud encouraged the author to write this paper. For comments the author is grateful to Sarah Baird, Mary Ann Bronson, Caitlin Brown, Kevin Donovan, Markus Goldstein, Miguel Hernan, Emmanuel Jimenez, Madhulika Khanna, Nishtha Kochhar, Andrew Leigh, David McKenzie, Berk Özler, Dina Pomeranz, Lant Pritchett, Milan Thomas, Vinod Thomas, Eva Vivalt, Dominique van de Walle and Andrew Zeitlin. Staff of the International Initiative for Impact Evaluation kindly provided an update to their database on published impact evaluations and helped with the author’s questions. Martin Ravallion, 2018. “Should the Randomistas (Continue to) Rule?.” CGD Working Paper 492. Washington, DC: Center for Global Development. -
E 8 General Considerations for Clinical Trials
European Medicines Agency March 1998 CPMP/ICH/291/95 ICH Topic E 8 General Considerations for Clinical Trials Step 5 NOTE FOR GUIDANCE ON GENERAL CONSIDERATIONS FOR CLINICAL TRIALS (CPMP/ICH/291/95) TRANSMISSION TO CPMP November 1996 TRANSMISSION TO INTERESTED PARTIES November 1996 DEADLINE FOR COMMENTS May 1997 FINAL APPROVAL BY CPMP September 1997 DATE FOR COMING INTO OPERATION March 1998 7 Westferry Circus, Canary Wharf, London, E14 4HB, UK Tel. (44-20) 74 18 85 75 Fax (44-20) 75 23 70 40 E-mail: [email protected] http://www.emea.eu.int EMEA 2006 Reproduction and/or distribution of this document is authorised for non commercial purposes only provided the EMEA is acknowledged GENERAL CONSIDERATIONS FOR CLINICAL TRIALS ICH Harmonised Tripartite Guideline Table of Contents 1. OBJECTIVES OF THIS DOCUMENT.............................................................................3 2. GENERAL PRINCIPLES...................................................................................................3 2.1 Protection of clinical trial subjects.............................................................................3 2.2 Scientific approach in design and analysis.................................................................3 3. DEVELOPMENT METHODOLOGY...............................................................................6 3.1 Considerations for the Development Plan..................................................................6 3.1.1 Non-Clinical Studies ........................................................................................6 -
Double Blind Trials Workshop
Double Blind Trials Workshop Introduction These activities demonstrate how double blind trials are run, explaining what a placebo is and how the placebo effect works, how bias is removed as far as possible and how participants and trial medicines are randomised. Curriculum Links KS3: Science SQA Access, Intermediate and KS4: Biology Higher: Biology Keywords Double-blind trials randomisation observer bias clinical trials placebo effect designing a fair trial placebo Contents Activities Materials Activity 1 Placebo Effect Activity Activity 2 Observer Bias Activity 3 Double Blind Trial Role Cards for the Double Blind Trial Activity Testing Layout Background Information Medicines undergo a number of trials before they are declared fit for use (see classroom activity on Clinical Research for details). In the trial in the second activity, pupils compare two potential new sunscreens. This type of trial is done with healthy volunteers to see if the there are any side effects and to provide data to suggest the dosage needed. If there were no current best treatment then this sort of trial would also be done with patients to test for the effectiveness of the new medicine. How do scientists make sure that medicines are tested fairly? One thing they need to do is to find out if their tests are free of bias. Are the medicines really working, or do they just appear to be working? One difficulty in designing fair tests for medicines is the placebo effect. When patients are prescribed a treatment, especially by a doctor or expert they trust, the patient’s own belief in the treatment can cause the patient to produce a response. -
Getting Off the Gold Standard for Causal Inference
Getting Off the Gold Standard for Causal Inference Robert Kubinec New York University Abu Dhabi March 1st, 2020 Abstract I argue that social scientific practice would be improved if we abandoned the notion that a gold standard for causal inference exists. Instead, we should consider the three main in- ference modes–experimental approaches and the counterfactual theory, large-N observational studies, and qualitative process-tracing–as observable indicators of an unobserved latent con- struct, causality. Under ideal conditions, any of these three approaches provide strong, though not perfect, evidence of an important part of what we mean by causality. I also present the use of statistical entropy, or information theory, as a possible yardstick for evaluating research designs across the silver standards. Rather than dichotomize studies as either causal or descrip- tive, the concept of relative entropy instead emphasizes the relative causal knowledge gained from a given research finding. Word Count: 9,823 words 1 You shall not crucify mankind upon a cross of gold. – William Jennings Bryan, July 8, 1896 The renewed attention to causal identification in the last twenty years has elevated the status of the randomized experiment to the sine qua non gold standard of the social sciences. Nonetheless, re- search employing observational data, both qualitative and quantitative, continues unabated, albeit with a new wrinkle: because observational data cannot, by definition, assign cases to receive causal treatments, any conclusions from these studies must be descriptive, rather than causal. However, even though this new norm has received widespread adoption in the social sciences, the way that so- cial scientists discuss and interpret their data often departs from this clean-cut approach. -
Observational Studies and Bias in Epidemiology
The Young Epidemiology Scholars Program (YES) is supported by The Robert Wood Johnson Foundation and administered by the College Board. Observational Studies and Bias in Epidemiology Manuel Bayona Department of Epidemiology School of Public Health University of North Texas Fort Worth, Texas and Chris Olsen Mathematics Department George Washington High School Cedar Rapids, Iowa Observational Studies and Bias in Epidemiology Contents Lesson Plan . 3 The Logic of Inference in Science . 8 The Logic of Observational Studies and the Problem of Bias . 15 Characteristics of the Relative Risk When Random Sampling . and Not . 19 Types of Bias . 20 Selection Bias . 21 Information Bias . 23 Conclusion . 24 Take-Home, Open-Book Quiz (Student Version) . 25 Take-Home, Open-Book Quiz (Teacher’s Answer Key) . 27 In-Class Exercise (Student Version) . 30 In-Class Exercise (Teacher’s Answer Key) . 32 Bias in Epidemiologic Research (Examination) (Student Version) . 33 Bias in Epidemiologic Research (Examination with Answers) (Teacher’s Answer Key) . 35 Copyright © 2004 by College Entrance Examination Board. All rights reserved. College Board, SAT and the acorn logo are registered trademarks of the College Entrance Examination Board. Other products and services may be trademarks of their respective owners. Visit College Board on the Web: www.collegeboard.com. Copyright © 2004. All rights reserved. 2 Observational Studies and Bias in Epidemiology Lesson Plan TITLE: Observational Studies and Bias in Epidemiology SUBJECT AREA: Biology, mathematics, statistics, environmental and health sciences GOAL: To identify and appreciate the effects of bias in epidemiologic research OBJECTIVES: 1. Introduce students to the principles and methods for interpreting the results of epidemio- logic research and bias 2. -
Assessing the Accuracy of a New Diagnostic Test When a Gold Standard Does Not Exist Todd A
UW Biostatistics Working Paper Series 10-1-1998 Assessing the Accuracy of a New Diagnostic Test When a Gold Standard Does Not Exist Todd A. Alonzo University of Southern California, [email protected] Margaret S. Pepe University of Washington, [email protected] Suggested Citation Alonzo, Todd A. and Pepe, Margaret S., "Assessing the Accuracy of a New Diagnostic Test When a Gold Standard Does Not Exist" (October 1998). UW Biostatistics Working Paper Series. Working Paper 156. http://biostats.bepress.com/uwbiostat/paper156 This working paper is hosted by The Berkeley Electronic Press (bepress) and may not be commercially reproduced without the permission of the copyright holder. Copyright © 2011 by the authors 1 Introduction Medical diagnostic tests play an important role in health care. New diagnostic tests for detecting viral and bacterial infections are continually being developed. The performance of a new diagnostic test is ideally evaluated by comparison with a perfect gold standard test (GS) which assesses infection status with certainty. Many times a perfect gold standard does not exist and a reference test or imperfect gold standard must be used instead. Although statistical methods and techniques are well established for assessing the accuracy of a new diagnostic test when a perfect gold standard exists, such methods are lacking for settings where a gold standard is not available. In this paper we will review some existing approaches to this problem and propose an alternative approach. To fix ideas we consider a specific example. Chlamydia trachomatis is the most common sexually transmitted bacterial pathogen. In women Chlamydia trachomatis can result in pelvic inflammatory disease (PID) which can lead to infertility, chronic pelvic pain, and life-threatening ectopic pregnancy.