Generation and Characterization of an Abcc1 Humanized Mouse Model (Habcc1flx/Flx) with Knockout Capability
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ABCB6 Is a Porphyrin Transporter with a Novel Trafficking Signal That Is Conserved in Other ABC Transporters Yu Fukuda University of Tennessee Health Science Center
University of Tennessee Health Science Center UTHSC Digital Commons Theses and Dissertations (ETD) College of Graduate Health Sciences 12-2008 ABCB6 Is a Porphyrin Transporter with a Novel Trafficking Signal That Is Conserved in Other ABC Transporters Yu Fukuda University of Tennessee Health Science Center Follow this and additional works at: https://dc.uthsc.edu/dissertations Part of the Chemicals and Drugs Commons, and the Medical Sciences Commons Recommended Citation Fukuda, Yu , "ABCB6 Is a Porphyrin Transporter with a Novel Trafficking Signal That Is Conserved in Other ABC Transporters" (2008). Theses and Dissertations (ETD). Paper 345. http://dx.doi.org/10.21007/etd.cghs.2008.0100. This Dissertation is brought to you for free and open access by the College of Graduate Health Sciences at UTHSC Digital Commons. It has been accepted for inclusion in Theses and Dissertations (ETD) by an authorized administrator of UTHSC Digital Commons. For more information, please contact [email protected]. ABCB6 Is a Porphyrin Transporter with a Novel Trafficking Signal That Is Conserved in Other ABC Transporters Document Type Dissertation Degree Name Doctor of Philosophy (PhD) Program Interdisciplinary Program Research Advisor John D. Schuetz, Ph.D. Committee Linda Hendershot, Ph.D. James I. Morgan, Ph.D. Anjaparavanda P. Naren, Ph.D. Jie Zheng, Ph.D. DOI 10.21007/etd.cghs.2008.0100 This dissertation is available at UTHSC Digital Commons: https://dc.uthsc.edu/dissertations/345 ABCB6 IS A PORPHYRIN TRANSPORTER WITH A NOVEL TRAFFICKING SIGNAL THAT -
Functional Studies on the MRP1 Multidrug Transporter: Characterization of ABC-Signature Mutant Variants
ANTICANCER RESEARCH 24: 449-456 (2004) Functional Studies on the MRP1 Multidrug Transporter: Characterization of ABC-signature Mutant Variants ZS. SZENTPÉTERY1,2, B. SARKADI1, É. BAKOS2 and A. VÁRADI2 1National Medical Center, Institute of Haematology and Immunology, Membrane Research Group of the Hungarian Academy of Sciences, Budapest; 2Institute of Enzymology, Biological Research Center, Hungarian Academy of Sciences, Budapest, Hungary Abstract. Background: MRP1 is a key multidrug resistance these agents below the cell-killing threshold, thus conferring ATP-binding Cassette (ABC) transporter in tumor cells. A resistance to many structurally dissimilar anticancer drugs. functionally important signature motif is conserved within all One of the proteins causing this phenotype is the human ABC domains. Our current studies aimed to elucidate the role Multidrug Resistance Protein (MRP1), which confers of these motifs in the cooperation of MRP1 ABC domains. resistance to a wide variety of anticancer drugs (1), but has Materials and Methods: We designed human MRP1 mutants also been shown to be a high affinity primary active based on a bacterial ABC structure. Conserved leucines (Leu) transporter for glutathione (GS)-conjugates (e.g. LTC4 – see were replaced by arginines (Arg), while glycines (Gly) were 2, 3). MRP1 transports large hydrophobic drugs, playing an substituted for aspartic acids (Asp). The activity of these important role in the chemotherapy resistance of several mutants was assayed by measuring ATPase activity and types of cancer cells, and cellular GS seem to be an vesicular transport. ATP-binding and transition-state formation important modulator in these transport functions (2, 4-9). were studied by a photoreactive ATP analog. -
Inhibiting ABCG2 with Sorafenib
Published OnlineFirst May 16, 2012; DOI: 10.1158/1535-7163.MCT-12-0215 Molecular Cancer Therapeutic Discovery Therapeutics New Use for an Old Drug: Inhibiting ABCG2 with Sorafenib Yinxiang Wei1,3, Yuanfang Ma3, Qing Zhao1,4, Zhiguang Ren1,3, Yan Li1, Tingjun Hou2, and Hui Peng1 Abstract Human ABCG2, a member of the ATP-binding cassette transporter superfamily, represents a promising target for sensitizing MDR in cancer chemotherapy. Although lots of ABCG2 inhibitors were identified, none of them has been tested clinically, maybe because of several problems such as toxicity or safety and pharma- cokinetic uncertainty of compounds with novel chemical structures. One efficient solution is to rediscover new uses for existing drugs with known pharmacokinetics and safety profiles. Here, we found the new use for sorafenib, which has a dual-mode action by inducing ABCG2 degradation in lysosome in addition to inhibiting its function. Previously, we reported some novel dual-acting ABCG2 inhibitors that showed closer similarity to degradation-induced mechanism of action. On the basis of these ABCG2 inhibitors with diverse chemical structures, we developed a pharmacophore model for identifying the critical pharmacophore features necessary for dual-acting ABCG2 inhibitors. Sorafenib forms impressive alignment with the pharmacophore hypothesis, supporting the argument that sorafenib is a potential ABCG2 inhibitor. This is the first article that sorafenib may be a good candidate for chemosensitizing agent targeting ABCG2-mediated MDR. This study may facilitate the rediscovery of new functions of structurally diverse old drugs and provide a more effective and safe way of sensitizing MDR in cancer chemotherapy. Mol Cancer Ther; 11(8); 1693–702. -
Whole-Exome Sequencing Identifies Novel Mutations in ABC Transporter
Liu et al. BMC Pregnancy and Childbirth (2021) 21:110 https://doi.org/10.1186/s12884-021-03595-x RESEARCH ARTICLE Open Access Whole-exome sequencing identifies novel mutations in ABC transporter genes associated with intrahepatic cholestasis of pregnancy disease: a case-control study Xianxian Liu1,2†, Hua Lai1,3†, Siming Xin1,3, Zengming Li1, Xiaoming Zeng1,3, Liju Nie1,3, Zhengyi Liang1,3, Meiling Wu1,3, Jiusheng Zheng1,3* and Yang Zou1,2* Abstract Background: Intrahepatic cholestasis of pregnancy (ICP) can cause premature delivery and stillbirth. Previous studies have reported that mutations in ABC transporter genes strongly influence the transport of bile salts. However, to date, their effects are still largely elusive. Methods: A whole-exome sequencing (WES) approach was used to detect novel variants. Rare novel exonic variants (minor allele frequencies: MAF < 1%) were analyzed. Three web-available tools, namely, SIFT, Mutation Taster and FATHMM, were used to predict protein damage. Protein structure modeling and comparisons between reference and modified protein structures were performed by SWISS-MODEL and Chimera 1.14rc, respectively. Results: We detected a total of 2953 mutations in 44 ABC family transporter genes. When the MAF of loci was controlled in all databases at less than 0.01, 320 mutations were reserved for further analysis. Among these mutations, 42 were novel. We classified these loci into four groups (the damaging, probably damaging, possibly damaging, and neutral groups) according to the prediction results, of which 7 novel possible pathogenic mutations were identified that were located in known functional genes, including ABCB4 (Trp708Ter, Gly527Glu and Lys386Glu), ABCB11 (Gln1194Ter, Gln605Pro and Leu589Met) and ABCC2 (Ser1342Tyr), in the damaging group. -
ABCA7 and Pathogenic Pathways of Alzheimer's Disease
brain sciences Review ABCA7 and Pathogenic Pathways of Alzheimer’s Disease Tomonori Aikawa, Marie-Louise Holm ID and Takahisa Kanekiyo * Department of Neuroscience, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA; [email protected] (T.A.); [email protected] (M.-L.H.) * Correspondence: [email protected]; Tel.: +1-904-953-2483 Received: 28 December 2017; Accepted: 3 February 2018; Published: 5 February 2018 Abstract: The ATP-binding cassette (ABC) reporter family functions to regulate the homeostasis of phospholipids and cholesterol in the central nervous system, as well as peripheral tissues. ABCA7 belongs to the A subfamily of ABC transporters, which shares 54% sequence identity with ABCA1. While ABCA7 is expressed in a variety of tissues/organs, including the brain, recent genome-wide association studies (GWAS) have identified ABCA7 gene variants as susceptibility loci for late-onset Alzheimer’s disease (AD). More important, subsequent genome sequencing analyses have revealed that premature termination codon mutations in ABCA7 are associated with the increased risk for AD. Alzheimer’s disease is a progressive neurodegenerative disease and the most common cause of dementia, where the accumulation and deposition of amyloid-β (Aβ) peptides cleaved from amyloid precursor protein (APP) in the brain trigger the pathogenic cascade of the disease. In consistence with human genetic studies, increasing evidence has demonstrated that ABCA7 deficiency exacerbates Aβ pathology using in vitro and in vivo models. While ABCA7 has been shown to mediate phagocytic activity in macrophages, ABCA7 is also involved in the microglial Aβ clearance pathway. Furthermore, ABCA7 deficiency results in accelerated Aβ production, likely by facilitating endocytosis and/or processing of APP. -
Identification of Novel Rare ABCC1 Transporter Mutations in Tumor
cells Article Identification of Novel Rare ABCC1 Transporter Mutations in Tumor Biopsies of Cancer Patients Onat Kadioglu 1, Mohamed Saeed 1, Markus Munder 2, Andreas Spuller 3, Henry Johannes Greten 4,5 and Thomas Efferth 1,* 1 Department of Pharmaceutical Biology, Institute of Pharmacy and Biochemistry, Johannes Gutenberg University, 55128 Mainz, Germany; [email protected] (O.K.); [email protected] (M.S.) 2 Third Department of Medicine (Hematology, Oncology, and Pneumology), University Medical Center of the Johannes Gutenberg University Mainz, 55131 Mainz, Germany; [email protected] 3 Clinic for Gynecology and Obstetrics, 76131 Karlsruhe, Germany; [email protected] 4 Abel Salazar Biomedical Sciences Institute, University of Porto, 4099-030 Porto, Portugal; [email protected] 5 Heidelberg School of Chinese Medicine, 69126 Heidelberg, Germany * Correspondence: eff[email protected]; Tel.: +49-6131-392-5751; Fax: 49-6131-392-3752 Received: 30 December 2019; Accepted: 23 January 2020; Published: 26 January 2020 Abstract: The efficiency of chemotherapy drugs can be affected by ATP-binding cassette (ABC) transporter expression or by their mutation status. Multidrug resistance is linked with ABC transporter overexpression. In the present study, we performed rare mutation analyses for 12 ABC transporters related to drug resistance (ABCA2, -A3, -B1, -B2, -B5, -C1, -C2, -C3, -C4, -C5, -C6, -G2) in a dataset of 18 cancer patients. We focused on rare mutations resembling tumor heterogeneity of ABC transporters in small tumor subpopulations. Novel rare mutations were found in ABCC1, but not in the other ABC transporters investigated. Diverse ABCC1 mutations were found, including nonsense mutations causing premature stop codons, and compared with the wild-type protein in terms of their protein structure. -
The ABC of Glycosylation Nazionale Tumori, Via Amadeo 42, 20133 Milan, Italy
CORRESPONDENCE LINK TO ORIGINAL ARTICLE Paola Perego, Laura Gatti and Giovanni L. Beretta are at the Department of Experimental Oncology and Molecular Medicine, Fondazione IRCCS Istituto The ABC of glycosylation Nazionale Tumori, Via Amadeo 42, 20133 Milan, Italy. Correspondence to P.P. Paola Perego, Laura Gatti and Giovanni L. Beretta e-mail: [email protected] doi:10.1038/nrc2789-c1 We read with great interest the Opinion showing the mislocalization of multidrug Acknowledgements The authors thank the Associazione Italiana per la Ricerca Sul article by Jamie Fletcher and colleagues, transporters in cisplatin-resistant cancer Cancro, Milan, Italy, for financial support. ABC transporters in cancer: more than cell lines7. Interestingly, glycosylation Competing Interests just drug efflux pumps. Nature Rev. might regulate ABC transporter levels, The authors declare no competing financial interests. Cancer. 10, 147–156 (2010), recently as altered glycosylation of ABCG2 (also 1 1. Fletcher, J. I., Haber, M., Henderson, M. J. & Norris, published in Nature Reviews Cancer . known as BCRP) results in increased M. D. ABC transporters in cancer: more than just drug The authors underline innovative aspects degradation8. Indeed, N-linked glycans efflux pumps. Nature Rev. Cancer 10, 147–156 (2010). 2. Gillet, J.-P., Efferth, T. & Remacle, J. Chemotherapy- regarding the role of ATP binding cas- are thought to be crucial regulators of the induced resistance by ATP-binding cassette transporter sette (ABC) transporters that — besides stability of ABCG2 in the endoplasmic genes. Biochem. Biophys. Acta 1775, 237–262 (2007). 3. Gatti, L., Beretta, G. L., Cossa, G., Zunino, F. & 2 8,9 contributing to drug resistance — seem reticulum . -
(Mdr1a/B) CRISPR/Cas9 Knockout Rat Model
1521-009X/47/2/71–79$35.00 https://doi.org/10.1124/dmd.118.084277 DRUG METABOLISM AND DISPOSITION Drug Metab Dispos 47:71–79, February 2019 Copyright ª 2019 by The American Society for Pharmacology and Experimental Therapeutics Development and Characterization of MDR1 (Mdr1a/b) CRISPR/Cas9 Knockout Rat Model Chenmeizi Liang,1 Junfang Zhao,1 Jian Lu,1 Yuanjin Zhang, Xinrun Ma, Xuyang Shang, Yongmei Li, Xueyun Ma, Mingyao Liu, and Xin Wang Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, People’s Republic of China (C.L., J.Z., J.L., Y.Z., Xi.M., X.S., Y.L., Xu.M., M.L., X.W.); and Center for Cancer and Stem Cell Biology, Institute of Biosciences and Technology, Texas A&M University Health Science Center, Houston, Texas (M.L.) Received August 31, 2018; accepted November 19, 2018 ABSTRACT Clustered regularly interspaced short palindromic repeats (CRISPR)/ intestine, brain, and kidney of KO rats. Further pharmacokinetic Downloaded from CRISPR-associated protein-9 nuclease (Cas9) technology is widely studies of digoxin, a typical substrate of MDR1, confirmed the used as a tool for gene editing in rat genome site-specific engineering. deficiency of MDR1 in vivo. To determine the possible compensa- Multidrug resistance 1 [MDR1 (also known as P-glycoprotein)] is a tory mechanism of Mdr1a/b (2/2) rats, the mRNA levels of the key efflux transporter that plays an important role not only in the CYP3A subfamily and transporter-related genes were compared in transport of endogenous and exogenous substances, but also in the brain, liver, kidney, and small intestine of KO and wild-type rats. -
Overview of P-Glycoprotein Inhibitors: a Rational Outlook
Brazilian Journal of Pharmaceutical Sciences vol. 48, n. 3, jul./sep., 2012 Article Overview of P-glycoprotein inhibitors: a rational outlook Kale Mohana Raghava Srivalli, P. K. Lakshmi* Department of Pharmaceutics, G. Pulla Reddy College of Pharmacy, Osmania University, India P-glycoprotein (P-gp), a transmembrane permeability glycoprotein, is a member of ATP binding cassette (ABC) super family that functions specifically as a carrier mediated primary active efflux transporter. It is widely distributed throughout the body and has a diverse range of substrates. Several vital therapeutic agents are substrates to P-gp and their bioavailability is lowered or a resistance is induced because of the protein efflux. Hence P-gp inhibitors were explored for overcoming multidrug resistance and poor bioavailability problems of the therapeutic P-gp substrates. The sensitivity of drug moieties to P-gp and vice versa can be established by various experimental models in silico, in vitro and in vivo. Ever since the discovery of P-gp, the research plethora identified several chemical structures as P-gp inhibitors. The aim of this review was to emphasize on the discovery and development of newer, inert, non-toxic, and more efficient, specifically targeting P-gp inhibitors, like those among the natural herb extracts, pharmaceutical excipients and formulations, and other rational drug moieties. The applications of cellular and molecular biology knowledge, in silico designed structural databases, molecular modeling studies and quantitative structure-activity relationship (QSAR) analyses in the development of novel rational P-gp inhibitors have also been mentioned. Uniterms: P-glycoprotein/inhibitors. Multidrug resistence. Cluster of differentiation 243. Sphingolipids. Competitive inhibitors. -
The Role of ABCA7 in Alzheimer's Disease: Evidence from Genomics
Acta Neuropathologica https://doi.org/10.1007/s00401-019-01994-1 REVIEW The role of ABCA7 in Alzheimer’s disease: evidence from genomics, transcriptomics and methylomics Arne De Roeck1,2 · Christine Van Broeckhoven1,2 · Kristel Sleegers1,2 Received: 1 February 2019 / Revised: 18 March 2019 / Accepted: 18 March 2019 © The Author(s) 2019 Abstract Genome-wide association studies (GWAS) originally identifed ATP-binding cassette, sub-family A, member 7 (ABCA7), as a novel risk gene of Alzheimer’s disease (AD). Since then, accumulating evidence from in vitro, in vivo, and human-based studies has corroborated and extended this association, promoting ABCA7 as one of the most important risk genes of both early-onset and late-onset AD, harboring both common and rare risk variants with relatively large efect on AD risk. Within this review, we provide a comprehensive assessment of the literature on ABCA7, with a focus on AD-related human -omics studies (e.g. genomics, transcriptomics, and methylomics). In European and African American populations, indirect ABCA7 GWAS associations are explained by expansion of an ABCA7 variable number tandem repeat (VNTR), and a common pre- mature termination codon (PTC) variant, respectively. Rare ABCA7 PTC variants are strongly enriched in AD patients, and some of these have displayed inheritance patterns resembling autosomal dominant AD. In addition, rare missense variants are more frequent in AD patients than healthy controls, whereas a common ABCA7 missense variant may protect from disease. Methylation at several CpG sites in the ABCA7 locus is signifcantly associated with AD. Furthermore, ABCA7 contains many diferent isoforms and ABCA7 splicing has been shown to associate with AD. -
Pleiotropic Roles of ABC Transporters in Breast Cancer
International Journal of Molecular Sciences Review Pleiotropic Roles of ABC Transporters in Breast Cancer Ji He 1 , Erika Fortunati 1, Dong-Xu Liu 2 and Yan Li 1,2,3,* 1 School of Science, Auckland University of Technology, Auckland 1010, New Zealand; [email protected] (J.H.); [email protected] (E.F.) 2 The Centre for Biomedical and Chemical Sciences, School of Science, Faculty of Health and Environmental Sciences, Auckland University of Technology, Auckland 1010, New Zealand; [email protected] 3 School of Public Health and Interprofessional Studies, Auckland University of Technology, Auckland 0627, New Zealand * Correspondence: [email protected]; Tel.: +64-9921-9999 (ext. 7109) Abstract: Chemotherapeutics are the mainstay treatment for metastatic breast cancers. However, the chemotherapeutic failure caused by multidrug resistance (MDR) remains a pivotal obstacle to effective chemotherapies of breast cancer. Although in vitro evidence suggests that the overexpression of ATP-Binding Cassette (ABC) transporters confers resistance to cytotoxic and molecularly targeted chemotherapies by reducing the intracellular accumulation of active moieties, the clinical trials that target ABCB1 to reverse drug resistance have been disappointing. Nevertheless, studies indicate that ABC transporters may contribute to breast cancer development and metastasis independent of their efflux function. A broader and more clarified understanding of the functions and roles of ABC transporters in breast cancer biology will potentially contribute to stratifying patients for precision regimens and promote the development of novel therapies. Herein, we summarise the current knowledge relating to the mechanisms, functions and regulations of ABC transporters, with a focus on the roles of ABC transporters in breast cancer chemoresistance, progression and metastasis. -
Rare ABCA7 Variants in 2 German Families with Alzheimer Disease
ARTICLE OPEN ACCESS Rare ABCA7 variants in 2 German families with Alzheimer disease Patrick May, PhD,* Sabrina Pichler, PhD,* Daniela Hartl, PhD, Dheeraj R. Bobbili, MSc, Manuel Mayhaus, PhD, Correspondence Christian Spaniol, PhD, Alexander Kurz, Prof, Rudi Balling, Prof, Jochen G. Schneider, Prof, Dr. Pichler [email protected] and Matthias Riemenschneider, MD, PhD, Prof Neurol Genet 2018;4:e224. doi:10.1212/NXG.0000000000000224 Abstract Objective The aim of this study was to identify variants associated with familial late-onset Alzheimer disease (AD) using whole-genome sequencing. Methods Several families with an autosomal dominant inheritance pattern of AD were analyzed by whole-genome sequencing. Variants were prioritized for rare, likely pathogenic variants in genes already known to be associated with AD and confirmed by Sanger sequencing using standard protocols. Results We identified 2 rare ABCA7 variants (rs143718918 and rs538591288) with varying penetrance in 2 independent German AD families, respectively. The single nucleotide variant (SNV) rs143718918 causes a missense mutation, and the deletion rs538591288 causes a frameshift mutation of ABCA7. Both variants have previously been reported in larger cohorts but with incomplete segregation information. ABCA7 is one of more than 20 AD risk loci that have so far been identified by genome-wide association studies, and both common and rare variants of ABCA7 have previously been described in different populations with higher frequencies in AD cases than in controls and varying penetrance. Furthermore, ABCA7 is known to be involved in several AD-relevant pathways. Conclusions We conclude that both SNVs might contribute to the development of AD in the examined family members.