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Heterotrophic Carbon Fixation in a Salamander-Alga Symbiosis
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.14.948299; this version posted February 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Heterotrophic Carbon Fixation in a Salamander-Alga Symbiosis. John A. Burns1,2, Ryan Kerney3, Solange Duhamel1,4 1Lamont-Doherty Earth Observatory of Columbia University, Division of Biology and Paleo Environment, Palisades, NY 2Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 3Gettysburg College, Biology, Gettysburg, PA 4University of Arizona, Department of Molecular and Cellular Biology, Tucson, AZ Abstract The unique symbiosis between a vertebrate salamander, Ambystoma maculatum, and unicellular green alga, Oophila amblystomatis, involves multiple modes of interaction. These include an ectosymbiotic interaction where the alga colonizes the egg capsule, and an intracellular interaction where the alga enters tissues and cells of the salamander. One common interaction in mutualist photosymbioses is the transfer of photosynthate from the algal symbiont to the host animal. In the A. maculatum-O. amblystomatis interaction, there is conflicting evidence regarding whether the algae in the egg capsule transfer chemical energy captured during photosynthesis to the developing salamander embryo. In experiments where we took care to separate the carbon fixation contributions of the salamander embryo and algal symbionts, we show that inorganic carbon fixed by A. maculatum embryos reaches 2% of the inorganic carbon fixed by O. amblystomatis algae within an egg capsule after 2 hours in the light. -
Phytoref: a Reference Database of the Plastidial 16S Rrna Gene of Photosynthetic Eukaryotes with Curated Taxonomy
Molecular Ecology Resources (2015) 15, 1435–1445 doi: 10.1111/1755-0998.12401 PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy JOHAN DECELLE,*† SARAH ROMAC,*† ROWENA F. STERN,‡ EL MAHDI BENDIF,§ ADRIANA ZINGONE,¶ STEPHANE AUDIC,*† MICHAEL D. GUIRY,** LAURE GUILLOU,*† DESIRE TESSIER,††‡‡ FLORENCE LE GALL,*† PRISCILLIA GOURVIL,*† ADRIANA L. DOS SANTOS,*† IAN PROBERT,*† DANIEL VAULOT,*† COLOMBAN DE VARGAS*† and RICHARD CHRISTEN††‡‡ *UMR 7144 - Sorbonne Universites, UPMC Univ Paris 06, Station Biologique de Roscoff, Roscoff 29680, France, †CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff 29680, France, ‡Sir Alister Hardy Foundation for Ocean Science, The Laboratory, Citadel Hill, Plymouth PL1 2PB, UK, §Marine Biological Association, The Laboratory, Citadel Hill, Plymouth PL1 2PB, UK, ¶Stazione Zoologica Anton Dohrn, Villa Comunale, Naples 80121, Italy, **The AlgaeBase Foundation, c/o Ryan Institute, National University of Ireland, University Road, Galway Ireland, ††CNRS, UMR 7138, Systematique Adaptation Evolution, Parc Valrose, BP71, Nice F06108, France, ‡‡Universite de Nice-Sophia Antipolis, UMR 7138, Systematique Adaptation Evolution, Parc Valrose, BP71, Nice F06108, France Abstract Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of the biosphere. The ongo- ing environmental metabarcoding revolution opens the perspective for holistic ecosystems biological studies of these organisms, in particular the unicellular microalgae that -
The Symbiotic Green Algae, Oophila (Chlamydomonadales
University of Connecticut OpenCommons@UConn Master's Theses University of Connecticut Graduate School 12-16-2016 The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Schultz University of Connecticut - Storrs, [email protected] Recommended Citation Schultz, Nikolaus, "The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History" (2016). Master's Theses. 1035. https://opencommons.uconn.edu/gs_theses/1035 This work is brought to you for free and open access by the University of Connecticut Graduate School at OpenCommons@UConn. It has been accepted for inclusion in Master's Theses by an authorized administrator of OpenCommons@UConn. For more information, please contact [email protected]. The Symbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Eduard Schultz B.A., Trinity College, 2014 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science at the University of Connecticut 2016 Copyright by Nikolaus Eduard Schultz 2016 ii ACKNOWLEDGEMENTS This thesis was made possible through the guidance, teachings and support of numerous individuals in my life. First and foremost, Louise Lewis deserves recognition for her tremendous efforts in making this work possible. She has performed pioneering work on this algal system and is one of the preeminent phycologists of our time. She has spent hundreds of hours of her time mentoring and teaching me invaluable skills. For this and so much more, I am very appreciative and humbled to have worked with her. Thank you Louise! To my committee members, Kurt Schwenk and David Wagner, thank you for your mentorship and guidance. -
A Reference Database of the Plastidial 16S Rrna Gene Of
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by HAL-UNICE PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy Johan Decelle, Sarah Romac, Rowena F Stern, El Mahdi Bendif, Adriana Zingone, St´ephane Audic, Michel D Guiry, Laure Guillou, D´esir´eTessier, Florence Le Gall, et al. To cite this version: Johan Decelle, Sarah Romac, Rowena F Stern, El Mahdi Bendif, Adriana Zingone, et al.. PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Molecular Ecology Resources, Blackwell, 2015, 15 (6), pp.1435-1445. <10.1111/1755-0998.12401>. <hal-01149047> HAL Id: hal-01149047 http://hal.upmc.fr/hal-01149047 Submitted on 6 May 2015 HAL is a multi-disciplinary open access L'archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destin´eeau d´ep^otet `ala diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publi´esou non, lished or not. The documents may come from ´emanant des ´etablissements d'enseignement et de teaching and research institutions in France or recherche fran¸caisou ´etrangers,des laboratoires abroad, or from public or private research centers. publics ou priv´es. Received Date : 12-Nov-2014 Revised Date : 20-Feb-2015 Accepted Date : 02-Mar-2015 Article type : Resource Article PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy Johan Decelle1,2, Sarah Romac1,2, Rowena F. Stern3, El Mahdi Bendif4, Adriana Zingone5, Stéphane Audic1,2, Michael D. -
Bioresource Now ! Vol.9 No.2 Bioresource Now ! Issue Number 9 February2013
BioResource Now ! Vol.9 No.2 BioResource Now ! Issue Number 9 February2013 Masanobu Kawachi (National Institute for Environmental Studies) Reprinting and reduplication of any content of Introduction to this newsletter is prohibited. Resource Center Collection, Preservation, and Future Tasks of All the contents are protected by the Japanese No.43 copyright law and international regulations. Various Algal Resources P1 - 2 Database Resources Database of Escherichia coli Download the PDF version of this newsletter at of This Month http://www.shigen.nig.ac.jp/shigen/news/ “NBRP E.coli Strain” P2 Introduction to Resource Center〈NO. 43〉 Collection, Preservation, and Future Tasks of Masanobu Kawachi , Head Various Algal Resources Biodiversity Resource Conservation Section, Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies Various Algae for algal cultures could not be controlled. The differences among algae appear as Algae are living organisms that are While being anxious about the restoration variations in their cytoarchitecture and characterized by “oxygenic photosynthesis.” of infrastructures, we must adopt urgent physiological, biochemical, and biological All living organisms that perform “oxygenic measures, e.g., moving stock cultures to characteristics. The diversity of algae, photosynthesis,” except terrestrial plants sunny places during daytime. The which extends over different classes of such as mosses, ferns, and seed plants, temperature in a liquid nitrogen refrigerator, eukaryotes, is the reason why algae are belong to the category of algae. Even in which frozen cultures were kept, could attractive as research resources. terrestrial plants that differentiated from be maintained within a safety zone even algae have evolved from algae belonging during a long-term power outage, and Resources for Elucidating the to the class Charophyceae (National frozen cultures were not affected by the Mechanism underlying Evolution BioResource Project [NBRP]-Algae earthquake. -
Rana Dalmatina Erruteen Eta Mikroalga Klorofitoen Arteko Sinbiosia: Atariko Karakterizazioa Eta Ikerketarako Proposamenak
Gradu Amaierako Lana Biologiako Gradua Rana dalmatina erruteen eta mikroalga klorofitoen arteko sinbiosia: atariko karakterizazioa eta ikerketarako proposamenak Egilea: Aroa Jurado Montesinos Zuzendaria: Aitor Laza eta Jose Ignacio Garcia Leioa, 2016ko Irailaren 1a AURKIBIDEA Abstract ............................................................................................................................. 2 Laburpena ......................................................................................................................... 2 Sarrera ............................................................................................................................... 3 Material eta metodoak ...................................................................................................... 5 Laginketa eremua………...……………………………………………………...5 Mikroalga berdeen kolonizazioaren karakterizazioa…..………………………..6 Denboran zeharreko alga berdeen dinamika…………..………………………..7 Emaitzak ........................................................................................................................... 9 Mikroalga berdeen kolonizazioaren karakterizazioa……………………...……..9 Denboran zeharreko alga berdeen dinamika……..……………………………12 Eztabaida ........................................................................................................................ 16 Ondorioak ....................................................................................................................... 17 Etorkizunerako proposamenak ...................................................................................... -
Properties of Vernal Ponds and Their Effect on the Density of Green Algae
Properties of vernal ponds and their effect on the density of green algae (Oophila amlystomatis) in spotted salamander (Ambystoma maculatum) egg masses Megan Thistle BIOS 35502: Practicum in Field Biology Advisor: Dr. Matthew Michel 2012 Abstract Amphibian populations are threatened and declining in many parts of the world and have been since the 1970s. Salamanders in particular are important mid-level predators that can provide direct and indirect biotic controls of species diversity and ecosystem processes. They also provide an important service to humans as cost-effective and readily quantifiable metrics of ecosystem health and integrity. Since salamanders are important ecosystem health indicators, steps should be taken to ensure their survival. One species in particular, Ambystoma maculatum or the spotted salamander has a unique symbiotic relationship with green algae, Oophila amlystomatis. The algae provide oxygen to the developing salamanders, helping them to grow quickly and improving post-hatching survival rates. The algae, on the other hand, use the CO2 and nitrogenous waste produced by the salamander embryos. Lab studies have shown that increased light, warmer water and increased partial pressure of oxygen benefit the algae, which in turn help the salamanders. In this study, the environmental variables of water temperature, dissolved oxygen (DO), pH, conductivity, algae eater density, canopy cover and aquatic vegetation were compared to the density of algae found in salamander egg cells in different vernal ponds. Results showed that none of the above environmental factors had a significant relationship with algae density in eggs in the different vernal ponds. Tests showed however that density of algae in egg cells was significantly different in some ponds as compared to others, which suggests that either other environmental factors have more of an influence on algal density, or there is a complex combination of factors that need to be considered. -
Nusuttodinium Aeruginosum/Acidotum As a Case Study
Acquisition of Photoautotrophy in Kleptoplastic Dinoflagellates – Nusuttodinium aeruginosum/acidotum as a case study I n a u g u r a l – D i s s e r t a t i o n zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät der Universität zu Köln vorgelegt von Sebastian Wittek aus Krefeld 2018 Berichterstatter: Prof. Dr. Michael Melkonian Prof. Dr. Hartmut Arndt Prof. Dr. John M. Archibald Tag der mündlichen Prüfung: 16.01.2017 Kurzzusammenfassung in deutscher Sprache ------------------------------------------------------------------------------------------------------------------------------ Kurzzusammenfassung in deutscher Sprache Die Integrierung stabiler Plastiden durch Endosymbiosen führte zu einer enormen Vielfalt an photosynthetischen eukaryotischen Organismen auf der Erde. Allerdings sind die Schritte während der Etablierung stabiler Endosymbiosen nur schlecht verstanden. Um Licht auf diesen frühen Schritt der Evolution zu werfen, wurden viele Studien an Organismen mit vorübergehenden Plastiden durchgeführt. Ursprünglich heterotroph, sind diese Organismen in der Lage, Photoautotrophie durch die Aufnahme photosynthetischer Beute zu erwerben. Anstatt verdaut zu werden, behält die Beute ihre Fähigkeit zur Photosynthese bei und versorgt den Wirt mit Photosyntheseprodukten. Der Beuteorganismus kann entweder zu einem Endosymbiont oder sogar zu einem Plastid reduziert werden. Im letzteren Fall werden die Plastiden der photosynthetischen Beute gestohlen und daher ‚Kleptoplastiden‘ genannt. Kleptoplastiden sind innerhalb der Eukaryoten weit verbreitet und kommen in vielzelligen, wie auch in einzelligen Organismen vor. Eine der bekanntesten Gruppen, welche Kleptoplastiden beherbergt, sind die Dinoflagellaten. Diese Studie fokussiert auf Süßwasserisolate der Kleptoplastiden beherbergenden Gattung Nusuttodinium mit einem besonderen Fokus auf die Art N. aeruginosum/acidotum, welche ihre Kleptoplastiden von der blau-grünen cryptophytischen Gattung Chroomonas erlangt. Es wurden von N. aeruginosum/acidotum, sowie einer weiteren Art, N. -
Plastid Evolution
ANRV342-PP59-20 ARI 16 January 2008 15:8 V I E E W R S I E N C N A D V A Plastid Evolution Sven B. Gould, Ross F. Waller, and Geoffrey I. McFadden School of Botany, University of Melbourne, Parkville VIC-3010, Australia; email: [email protected], [email protected], [email protected] Annu. Rev. Plant Biol. 2008. 59:491–517 Key Words The Annual Review of Plant Biology is online at secondary/tertiary endosymbiosis, complex plastids, protein plant.annualreviews.org targeting, genome evolution, intracellular gene transfer, plastid This article’s doi: biochemistry 10.1146/annurev.arplant.59.032607.092915 Copyright c 2008 by Annual Reviews. Abstract ! All rights reserved The ancestors of modern cyanobacteria invented O2-generating 1543-5008/08/0602-0491$20.00 photosynthesis some 3.6 billion years ago. The conversion of wa- ter and CO2 into energy-rich sugars and O2 slowly transformed the planet, eventually creating the biosphere as we know it today. Eukaryotes didn’t invent photosynthesis; they co-opted it from prokaryotes by engulfing and stably integrating a photoautotrophic prokaryote in a process known as primary endosymbiosis. After ap- proximately a billion of years of coevolution, the eukaryotic host and its endosymbiont have achieved an extraordinary level of inte- gration and have spawned a bewildering array of primary producers that now underpin life on land and in the water. No partnership has been more important to life on earth. Secondary endosymbioses have created additional autotrophic eukaryotic lineages that include key organisms in the marine environment. Some of these organisms have subsequently reverted to heterotrophic lifestyles, becoming signifi- cant pathogens, microscopic predators, and consumers. -
Systema Naturae. the Classification of Living Organisms
Systema Naturae. The classification of living organisms. c Alexey B. Shipunov v. 5.601 (June 26, 2007) Preface Most of researches agree that kingdom-level classification of living things needs the special rules and principles. Two approaches are possible: (a) tree- based, Hennigian approach will look for main dichotomies inside so-called “Tree of Life”; and (b) space-based, Linnaean approach will look for the key differences inside “Natural System” multidimensional “cloud”. Despite of clear advantages of tree-like approach (easy to develop rules and algorithms; trees are self-explaining), in many cases the space-based approach is still prefer- able, because it let us to summarize any kinds of taxonomically related da- ta and to compare different classifications quite easily. This approach also lead us to four-kingdom classification, but with different groups: Monera, Protista, Vegetabilia and Animalia, which represent different steps of in- creased complexity of living things, from simple prokaryotic cell to compound Nature Precedings : doi:10.1038/npre.2007.241.2 Posted 16 Aug 2007 eukaryotic cell and further to tissue/organ cell systems. The classification Only recent taxa. Viruses are not included. Abbreviations: incertae sedis (i.s.); pro parte (p.p.); sensu lato (s.l.); sedis mutabilis (sed.m.); sedis possi- bilis (sed.poss.); sensu stricto (s.str.); status mutabilis (stat.m.); quotes for “environmental” groups; asterisk for paraphyletic* taxa. 1 Regnum Monera Superphylum Archebacteria Phylum 1. Archebacteria Classis 1(1). Euryarcheota 1 2(2). Nanoarchaeota 3(3). Crenarchaeota 2 Superphylum Bacteria 3 Phylum 2. Firmicutes 4 Classis 1(4). Thermotogae sed.m. 2(5). -
Connecticut Wildlife March/April 2012 –Sport Fish Restoration–
March/April 2012 CONNECTICUT DEPARTMENT OF ENERGY AND ENVIRONMENTAL PROTECTION BUREAU OF NATURAL RESOURCES DIVISIONS OF WILDLIFE, INLAND & MARINE FISHERIES, AND FORESTRY March/April 2012 Connecticut Wildlife 1 Volume 32, Number 2 ● March / April 2012 From the Director’s Desk onnecticut C ildlife Guest Column by Inland Fisheries W Published bimonthly by Division Director Peter Aarrestad Connecticut Department of While we navigate our way into the future, it Energy and Environmental Protection is wise to do so with an eye toward the past. Bureau of Natural Resources As stewards, supporters, and managers of our Wildlife Division www.ct.gov/deep state’s natural resources, we are fortunate to Commissioner be ably guided by many visionary forebears, including those instrumental Daniel C. Esty in creating the Federal Aid in Wildlife Restoration Act (1937) and Sport Deputy Commissioner Fish Restoration Act (1950) that you read about in the previous edition Susan Frechette Chief, Bureau of Natural Resources of Connecticut Wildlife. Collectively, these noteworthy and successful William Hyatt pieces of federal legislation have enabled our state and others to establish Director, Wildlife Division relevant and effective natural resource management programs for the Rick Jacobson conservation and human enjoyment of our fish and wildlife resources. Magazine Staff I encourage you to learn in this edition about our diverse freshwater Managing Editor Kathy Herz fisheries management programs (angling is now a year-round activity in Production Editor Paul Fusco our state), reconnecting migratory fish runs with historic habitat, state Contributing Editors: Tim Barry (Inland Fisheries) Penny Howell (Marine Fisheries) wildlife management areas, and the deer management program, all of James Parda (Forestry) which rely to some degree upon these important federal funding sources. -
49639109, 49639110, 49535803, 49535801, 49639104). the Reviewer
Literature Review Summary Chemical Name: Atrazine PC Code: 080803 Purpose of Review (DP Barcode or Litigation): Review for inclusion in the atrazine risk assessment Date of Review: 3/21/16 Summary Syngenta submitted the following list of studies describing the isolation, culturing and testing for atrazine toxicity on the algae Oophila sp., an algae that forms a symbiotic relationship with some salamander species (MRIDs 49639109, 49639110, 49535803, 49535801, 49639104). The reviewer read the following study reports provided to the agency and considered their science and reported results: Baxter, L.; Brain, R.; Rodriguez-Gil, J.; et al. (2014) Atrazine: Response of the Green Alga Oophila sp., a Salamander Endosymbiont, to a PSII-Inhibitor under Laboratory Conditions. Environmental Toxicology and Chemistry 33(8):1858-1864. MRID 49535803 Hanson, M.; Rodriquez-Gil, J.; Baxter, L.; et al. (2014) Isolation, Identification, and Optimization of Culturing Conditions of the Alga Oophila sp., a Salamander Symbiont, for its Use in Toxicity Testing under Laboratory Conditions: Final Report. Project Number: ATZ2013B, TK0186283. Unpublished study prepared by University of Guelph. 30p., MRID 49639109 Hanson, M.; Baxter, L.; Rodriquez-Gil, J.; et al. (2014) Characterization of the Response of the Alga Oophila sp., a Salamander Symbiont, to Atrazine Under Laboratory Conditions: Final Report. Project Number: ATZ2013A, TK0186283. Unpublished study prepared by University of Guelph. 52p., MRID 49639110 Hanson, M.; Baxter, L.; Solomon, K. (2015) The Response of the Salamander Ambystoma maculatum and its Egg-Capsule Endosymbiont (the alga Oophila sp.) to the Photosystem II Inhibitor Atrazine Under Laboratory Conditions: Final Report. Project Number: ATZ2014, TK0224041. Unpublished study prepared by University of Guelph.