What Is a Mollusk?
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Common Name: Chiton Class: Polyplacophora
Common Name: Chiton Class: Polyplacophora Scrapes algae off rock with radula 8 Overlapping Plates Phylum? Mollusca Class? Gastropoda Common name? Brown sea hare Class? Scaphopoda Common name? Tooth shell or tusk shell Mud Tentacle Foot Class? Gastropoda Common name? Limpet Phylum? Mollusca Class? Bivalvia Class? Gastropoda Common name? Brown sea hare Phylum? Mollusca Class? Gastropoda Common name? Nudibranch Class? Cephalopoda Cuttlefish Octopus Squid Nautilus Phylum? Mollusca Class? Gastropoda Most Bivalves are Filter Feeders A B E D C • A: Mantle • B: Gill • C: Mantle • D: Foot • E: Posterior adductor muscle I.D. Green: Foot I.D. Red Gills Three Body Regions 1. Head – Foot 2. Visceral Mass 3. Mantle A B C D • A: Radula • B: Mantle • C: Mouth • D: Foot What are these? Snail Radulas Dorsal HingeA Growth line UmboB (Anterior) Ventral ByssalC threads Mussel – View of Outer Shell • A: Hinge • B: Umbo • C: Byssal threads Internal Anatomy of the Bay Mussel A B C D • A: Labial palps • B: Mantle • C: Foot • D: Byssal threads NacreousB layer Posterior adductorC PeriostracumA muscle SiphonD Mantle Byssal threads E Internal Anatomy of the Bay Mussel • A: Periostracum • B: Nacreous layer • C: Posterior adductor muscle • D: Siphon • E: Mantle Byssal gland Mantle Gill Foot Labial palp Mantle Byssal threads Gill Byssal gland Mantle Foot Incurrent siphon Byssal Labial palp threads C D B A E • A: Foot • B: Gills • C: Posterior adductor muscle • D: Excurrent siphon • E: Incurrent siphon Heart G F H E D A B C • A: Foot • B: Gills • C: Mantle • D: Excurrent siphon • E: Incurrent siphon • F: Posterior adductor muscle • G: Labial palps • H: Anterior adductor muscle Siphon or 1. -
Analysis of Synonymous Codon Usage Patterns in Sixty-Four Different Bivalve Species
Analysis of synonymous codon usage patterns in sixty-four diVerent bivalve species Marco Gerdol1, Gianluca De Moro1, Paola Venier2 and Alberto Pallavicini1 1 Department of Life Sciences, University of Trieste, Trieste, Italy 2 Department of Biology, University of Padova, Padova, Italy ABSTRACT Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across diVerent genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 diVerent species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable diVerences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational eYciency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon -
Marine Invertebrate Field Guide
Marine Invertebrate Field Guide Contents ANEMONES ....................................................................................................................................................................................... 2 AGGREGATING ANEMONE (ANTHOPLEURA ELEGANTISSIMA) ............................................................................................................................... 2 BROODING ANEMONE (EPIACTIS PROLIFERA) ................................................................................................................................................... 2 CHRISTMAS ANEMONE (URTICINA CRASSICORNIS) ............................................................................................................................................ 3 PLUMOSE ANEMONE (METRIDIUM SENILE) ..................................................................................................................................................... 3 BARNACLES ....................................................................................................................................................................................... 4 ACORN BARNACLE (BALANUS GLANDULA) ....................................................................................................................................................... 4 HAYSTACK BARNACLE (SEMIBALANUS CARIOSUS) .............................................................................................................................................. 4 CHITONS ........................................................................................................................................................................................... -
Clam Dissection Guideline
Clam Dissection Guideline BACKGROUND: Clams are bivalves, meaning that they have shells consisting of two halves, or valves. The valves are joined at the top, and the adductor muscles on each side hold the shell closed. If the adductor muscles are relaxed, the shell is pulled open by ligaments located on each side of the umbo. The clam's foot is used to dig down into the sand, and a pair of long incurrent and excurrent siphons that extrude from the clam's mantle out the side of the shell reach up to the water above (only the exit points for the siphons are shown). Clams are filter feeders. Water and food particles are drawn in through one siphon to the gills where tiny, hair-like cilia move the water, and the food is caught in mucus on the gills. From there, the food-mucus mixture is transported along a groove to the palps (mouth flaps) which push it into the clam's mouth. The second siphon carries away the water. The gills also draw oxygen from the water flow. The mantle, a thin membrane surrounding the body of the clam, secretes the shell. The oldest part of the clam shell is the umbo, and it is from the hinge area that the clam extends as it grows. I. Purpose: The purpose of this lab is to identify the internal and external structures of a mollusk by dissecting a clam. II. Materials: 2 pairs of safety goggles 1 paper towel 2 pairs of gloves 1 pair of scissors 1 preserved clam 2 pairs of forceps 1 dissecting tray 2 probes III. -
The Shell Matrix of the European Thorny Oyster, Spondylus Gaederopus: Microstructural and Molecular Characterization
The shell matrix of the european thorny oyster, Spondylus gaederopus: microstructural and molecular characterization. Jorune Sakalauskaite, Laurent Plasseraud, Jérôme Thomas, Marie Alberic, Mathieu Thoury, Jonathan Perrin, Frédéric Jamme, Cédric Broussard, Beatrice Demarchi, Frédéric Marin To cite this version: Jorune Sakalauskaite, Laurent Plasseraud, Jérôme Thomas, Marie Alberic, Mathieu Thoury, et al.. The shell matrix of the european thorny oyster, Spondylus gaederopus: microstructural and molecular characterization.. Journal of Structural Biology, Elsevier, 2020, 211 (1), pp.107497. 10.1016/j.jsb.2020.107497. hal-02906399 HAL Id: hal-02906399 https://hal.archives-ouvertes.fr/hal-02906399 Submitted on 17 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The shell matrix of the European thorny oyster, Spondylus gaederopus: microstructural and molecular characterization List of authors: Jorune Sakalauskaite1,2, Laurent Plasseraud3, Jérôme Thomas2, Marie Albéric4, Mathieu Thoury5, Jonathan Perrin6, Frédéric Jamme6, Cédric Broussard7, Beatrice Demarchi1, Frédéric Marin2 Affiliations 1. Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin, Italy; 2. Biogeosciences, UMR CNRS 6282, University of Burgundy-Franche-Comté, 6 Boulevard Gabriel, 21000 Dijon, France. 3. Institute of Molecular Chemistry, ICMUB UMR CNRS 6302, University of Burgundy- Franche-Comté, 9 Avenue Alain Savary, 21000 Dijon, France. -
Phylum MOLLUSCA Chitons, Bivalves, Sea Snails, Sea Slugs, Octopus, Squid, Tusk Shell
Phylum MOLLUSCA Chitons, bivalves, sea snails, sea slugs, octopus, squid, tusk shell Bruce Marshall, Steve O’Shea with additional input for squid from Neil Bagley, Peter McMillan, Reyn Naylor, Darren Stevens, Di Tracey Phylum Aplacophora In New Zealand, these are worm-like molluscs found in sandy mud. There is no shell. The tiny MOLLUSCA solenogasters have bristle-like spicules over Chitons, bivalves, sea snails, sea almost the whole body, a groove on the underside of the body, and no gills. The more worm-like slugs, octopus, squid, tusk shells caudofoveates have a groove and fewer spicules but have gills. There are 10 species, 8 undescribed. The mollusca is the second most speciose animal Bivalvia phylum in the sea after Arthropoda. The phylum Clams, mussels, oysters, scallops, etc. The shell is name is taken from the Latin (molluscus, soft), in two halves (valves) connected by a ligament and referring to the soft bodies of these creatures, but hinge and anterior and posterior adductor muscles. most species have some kind of protective shell Gills are well-developed and there is no radula. and hence are called shellfish. Some, like sea There are 680 species, 231 undescribed. slugs, have no shell at all. Most molluscs also have a strap-like ribbon of minute teeth — the Scaphopoda radula — inside the mouth, but this characteristic Tusk shells. The body and head are reduced but Molluscan feature is lacking in clams (bivalves) and there is a foot that is used for burrowing in soft some deep-sea finned octopuses. A significant part sediments. The shell is open at both ends, with of the body is muscular, like the adductor muscles the narrow tip just above the sediment surface for and foot of clams and scallops, the head-foot of respiration. -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
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1 Mobilising molluscan models and genomes in biology 2 Angus Davison1 and Maurine Neiman2 3 1. School of Life Sciences, University Park, University of Nottingham, NG7 2RD, UK 4 2. Department of Biology, University of Iowa, Iowa City, IA, USA and Department of Gender, 5 Women's, and Sexuality Studies, University of Iowa, Iowa, City, IA, USA 6 Abstract 7 Molluscs are amongst the most ancient, diverse, and important of all animal taxa. Even so, 8 no individual mollusc species has emerged as a broadly applied model system in biology. 9 We here make the case that both perceptual and methodological barriers have played a role 10 in the relative neglect of molluscs as research organisms. We then summarize the current 11 application and potential of molluscs and their genomes to address important questions in 12 animal biology, and the state of the field when it comes to the availability of resources such 13 as genome assemblies, cell lines, and other key elements necessary to mobilising the 14 development of molluscan model systems. We conclude by contending that a cohesive 15 research community that works together to elevate multiple molluscan systems to ‘model’ 16 status will create new opportunities in addressing basic and applied biological problems, 17 including general features of animal evolution. 18 Introduction 19 Molluscs are globally important as sources of food, calcium and pearls, and as vectors of 20 human disease. From an evolutionary perspective, molluscs are notable for their remarkable 21 diversity: originating over 500 million years ago, there are over 70,000 extant mollusc 22 species [1], with molluscs present in virtually every ecosystem. -
Nudibranch Range Shifts Associated with the 2014 Warm Anomaly in the Northeast Pacific
Bulletin of the Southern California Academy of Sciences Volume 115 | Issue 1 Article 2 4-26-2016 Nudibranch Range Shifts associated with the 2014 Warm Anomaly in the Northeast Pacific Jeffrey HR Goddard University of California, Santa Barbara, [email protected] Nancy Treneman University of Oregon William E. Pence Douglas E. Mason California High School Phillip M. Dobry See next page for additional authors Follow this and additional works at: https://scholar.oxy.edu/scas Part of the Marine Biology Commons, Population Biology Commons, and the Zoology Commons Recommended Citation Goddard, Jeffrey HR; Treneman, Nancy; Pence, William E.; Mason, Douglas E.; Dobry, Phillip M.; Green, Brenna; and Hoover, Craig (2016) "Nudibranch Range Shifts associated with the 2014 Warm Anomaly in the Northeast Pacific," Bulletin of the Southern California Academy of Sciences: Vol. 115: Iss. 1. Available at: https://scholar.oxy.edu/scas/vol115/iss1/2 This Article is brought to you for free and open access by OxyScholar. It has been accepted for inclusion in Bulletin of the Southern California Academy of Sciences by an authorized editor of OxyScholar. For more information, please contact [email protected]. Nudibranch Range Shifts associated with the 2014 Warm Anomaly in the Northeast Pacific Cover Page Footnote We thank Will and Ziggy Goddard for their expert assistance in the field, Jackie Sones and Eric Sanford of the Bodega Marine Laboratory for sharing their observations and knowledge of the intertidal fauna of Bodega Head and Sonoma County, and David Anderson of the National Park Service and Richard Emlet of the University of Oregon for sharing their respective observations of Okenia rosacea in northern California and southern Oregon. -
Prey Preference Follows Phylogeny: Evolutionary Dietary Patterns Within the Marine Gastropod Group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) Jessica A
Goodheart et al. BMC Evolutionary Biology (2017) 17:221 DOI 10.1186/s12862-017-1066-0 RESEARCHARTICLE Open Access Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) Jessica A. Goodheart1,2* , Adam L. Bazinet1,3, Ángel Valdés4, Allen G. Collins2 and Michael P. Cummings1 Abstract Background: The impact of predator-prey interactions on the evolution of many marine invertebrates is poorly understood. Since barriers to genetic exchange are less obvious in the marine realm than in terrestrial or freshwater systems, non-allopatric divergence may play a fundamental role in the generation of biodiversity. In this context, shifts between major prey types could constitute important factors explaining the biodiversity of marine taxa, particularly in groups with highly specialized diets. However, the scarcity of marine specialized consumers for which reliable phylogenies exist hampers attempts to test the role of trophic specialization in evolution. In this study, RNA- Seq data is used to produce a phylogeny of Cladobranchia, a group of marine invertebrates that feed on a diverse array of prey taxa but mostly specialize on cnidarians. The broad range of prey type preferences allegedly present in two major groups within Cladobranchia suggest that prey type shifts are relatively common over evolutionary timescales. Results: In the present study, we generated a well-supported phylogeny of the major lineages within Cladobranchia using RNA-Seq data, and used ancestral state reconstruction analyses to better understand the evolution of prey preference. These analyses answered several fundamental questions regarding the evolutionary relationships within Cladobranchia, including support for a clade of species from Arminidae as sister to Tritoniidae (which both preferentially prey on Octocorallia). -
The Morphology of Ismaila Monstrosa Bergh (Copepoda)
AN ABSTRACT OF THE THESIS OF FRANCIS PETER BELCIK for the M. S. inZoology (Name) (Degree) (Major) Date thesis is presented l'/ Ak I Title THE MORPHOLOGY OF ISMAILA MONSTROSA BERGH (COPEPODA) Abstract approvedRedacted for Privacy The morphology of a rather rare parasitic copepod was studied.Ismaila monstrosa Bergh, an endoparasitic copepod was found in the nudibranch, Antiopella fusca,at Coos Bay, Oregon. Many anatomical features were found, which were different from previous descriptions.Males were described for the first time. Young males lacked the gonadal lobes found on the dorsal sides of adult males.Both sexes had similar mouthparts, differing only in size.These mouthparts consisted, like those of Splanchnotrophus, of a bifid lab rum, a pair of simple mandibles, a pair of maxillae and a triangular labium with side processes.There was only a single pair of maxillae and they are unusual in that they were found to be setigerous and two-jointed.The distal portion of this characteristic maxilla was biramous, the smaller member often obscure.Because of this and other anatomical factors, I proposed a new variety Ismaila monstrosa var. pacifica and a newsubfamily, the Ismailinae. Although the female possessed three pairs of lateral appendages, the male lacked these, having only the two pairs of ventral appendages. In the female specimens there were two pairs of ventral appendages or !?stomach_armsh?.The first pair was bifurcate, the second pair trifurcate.In the male specimens the first pair was uniramous and the second pair unequally biramous. The dige.stive system was found to be incomplete in both sexes. -
The Opisthobranchs of Cape Arago. Oregon. with Notes
THE OPISTHOBRANCHS OF CAPE ARAGO. OREGON. WITH NOTES ON THEIR NATURAL HISTORY AND A SUMMARY OF BENTHIC OPISTHOBRANCHS KNOWN FROM OREGON by JEFFREY HAROLD RYAN GODDARD A THESIS Presented to the Department of Biology and the Graduate School of the University of Oregon in partial fulfillment of the requirements for the degree of Master of Science December 1983 !tIl. ii I :'" APPROVED: -------:n:pe:;-;t::;e:;:-rt;l;1T:-.JF~r:aaD:inkk--- i I-I 1 iii An Abstract of the Thesis of Jeffrey Harold Ryan Goddard for the degree of Master of Science in the Department of Biology to be taken December 1983 TITLE: THE OPISTHOBRANCHS OF CAPE ARAGO, OREGON, WITH NOTES ON THEIR NATURAL HISTORY AND A SUM}~Y OF BENTHIC OPISTHOBRANCHS KNOWN FROM OREGON Approved: Peter W. Frank The opisthobranch molluscs of Oregon have been little studied, and little is known about the biology of many species. The present study consisted of field and laboratory observations of Cape Arago opistho- branchs. Forty-six species were found, extending the range of six north- ward and two southward. New food records are presented for nine species; an additional 20 species were observed feeding on previously recorded prey. Development data are given for 21 species. Twenty produce plank- totrophic larvae, and Doto amyra produces lecithotrophic larvae, the first such example known from Eastern Pacific opisthobranchs. Hallaxa chani appears to be the first eudoridacean nudibranch known to have a subannual life cycle. Development, life cycles, food and competition, iv ranges, and the ecological role of nudibranchs are discussed. Nudi- branchs appear to significantly affect the diversity of the Cape Arago encrusting community.