The Anaphase Promoting Complex/ Cyclosome: a Machine Designed to Destroy

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The Anaphase Promoting Complex/ Cyclosome: a Machine Designed to Destroy REVIEWS The anaphase promoting complex/ cyclosome: a machine designed to destroy Jan-Michael Peters Abstract | The anaphase promoting complex/cyclosome (APC/C) is a ubiquitin ligase that has essential functions in and outside the eukaryotic cell cycle. It is the most complex molecular machine that is known to catalyse ubiquitylation reactions, and it contains more than a dozen subunits that assemble into a large 1.5-MDa complex. Recent discoveries have revealed an unexpected multitude of mechanisms that control APC/C activity, and have provided a first insight into how this unusual ubiquitin ligase recognizes its substrates. Ubiquitin ligase (E3) Cell proliferation in all eukaryotes depends strictly In this article I discuss how APC/C might be able to The third enzyme in a series — on the ubiquitin ligase (E3) activity of the anaphase selectively recognize its substrates, and review recent dis- the first two are designated promoting complex/cyclosome (APC/C). APC/C is a coveries that have provided new insights into the essential ubiquitin-activating (E1) and 1.5-MDa protein complex that is found in the nucleus mitotic functions of APC/C and its regulation during ubiquitin-conjugating (E2) — of interphase cells, and that spreads throughout the the cell cycle. But first I describe the APC/C complex that is responsible for the ubiquitylation of target cytoplasm and associates with parts of the spindle and its cofactors, and their roles in APC/C-mediated proteins. E3 enzymes provide apparatus during mitosis. Without APC/C, cells cannot ubiquitylation. platforms for binding E2 separate their sister chromatids in anaphase, they enzymes and specific cannot exit from mitosis and divide into two daughter The APC/C complex and its cofactors substrates, thereby coor dina ting the cells, and they cannot initiate the steps that are nec- APC/C is composed of at least a dozen different sub- ubiquitylation of selected essary for DNA replication later in S phase. APC/C units (TABLE 1), but it can only ubiquitylate substrates substrates. seems to have similarly important functions in meiosis, with the help of three cofactors, the ubiquitin-activating and a number of observations imply that APC/C has (E1) enzyme, a ubiquitin-conjugating (E2) enzyme and a Polyubiquitin chains also adopted new roles during the evolution of multi- co-activator protein. Protein assemblies that are composed of several copies cellular organisms in postmitotic differentiated cells of the small protein ubiquitin. (reviewed in REFS 1,2). APC/C cofactors. Like all E3 enzymes, APC/C uses The ubiquitin residues are In all known cases, APC/C performs its various ubiquitin residues that have been activated by E1 and covalently attached to each functions by assembling polyubiquitin chains on then transferred to E2 enzymes. APC/C can collaborate other through isopeptide bonds. substrate proteins (Supplementary information S1 with two E2 enzymes, UBCH5 and UBCH10 (which (table)), which targets these proteins for destruction is also known as E2-C or UbcX)3,4. Although each of by the 26S proteasome. Proteolysis is inherently asso- these is sufficient to support APC/C-mediated ubiq- ciated with inactivation, which is what APC/C does uitylation reactions in vitro, UBCH10 orthologues in in a number of cases in which its substrate protein is human cells, Drosophila melanogaster and fission yeast either a catalytic protein or an essential activator of are essential for the initiation of anaphase, indicating such an enzyme. Prominent examples of these types that UBCH5 alone cannot fully support APC/C activity of APC/C substrate are the mitosis-specific Aurora in vivo5–7. A possible exception is budding yeast, in kinases and Polo-like kinase-1 (Plk1), and mitotic which Ubc5 alone seems to be sufficient for APC/C Research Institute of 8 Molecular Pathology, A- and B-type cyclins, the activating subunits of function . Dr. Bohr-Gasse 7, cyclin-dependent kinases-1 and -2 (Cdk1 and Cdk2). UBCH5 and UBCH10 associate with APC/C only A-1030 Vienna, Austria. However, APC/C can also activate proteins, in this transiently9. However, it is unknown whether the e-mail: case, by targeting inhibitors of these proteins for dynamic nature of this interaction is required for [email protected] doi:10.1038/nrm1988 destruction. Famous examples are securin, an inhibi- ubiquitylation reactions, as has been proposed to be 10 Published online tor of the protease separase, and geminin, a protein the case for the ubiquitin ligase SCF , or whether the 9 August 2006 that inactivates the replication factor CTD1. transient nature of APC/C–E2 interactions is simply a 644 | SEPTEMBER 2006 | VOLUME 7 www.nature.com/reviews/molcellbio © 2006 Nature Publishing Group REVIEWS Table 1 | APC/C subunits and co-activators Vertebrates Drosophila Budding yeast Structural motifs Functions melanogaster 26S proteasome Subunits A large multisubunit protease complex that selectively APC1/TSG24 Shattered Apc1 RPN1 and RPN2 homology* - degrades multi-ubiquitylated APC2 Morula Apc2 Cullin homology APC11 and DOC1 proteins. It contains a 20S binding particle that carries the catalytic activity and two CDC27/APC3 Makos Cdc27 TPRs CDH1 binding regulatory 19S particles. APC4 - Apc4 WD40 repeats - Cyclin-dependent kinase APC5 Ida Apc5 TPRs - (Cdk). A protein kinase that CDC16/APC6 - Cdc16 TPRs - has activity that depends on an association with a cyclin APC7 - - TPRs - subunit. Cdks are essential for CDC23/APC8 - Cdc23 TPRs - DNA replication and entry into mitosis. DOC1/APC10 - Doc1/Apc10 Doc domain Substrate recognition, processivity Ubiquitin-activating (E1) enzyme APC11 Lemming Apc11 RING-H2 finger E2 recruitment, E3 An enzyme that activates the activity C-terminal glycine residue of CDC26 - Cdc26 - - the small protein ubiquitin, allowing it to form a high- SWM1/APC13 - Swm1/Apc13 - - energy thioester bond to a --Apc9- - specific cysteine residue of the E1. E1 then transfers this - - Mnd2 - Ama1 inhibition activated form of ubiquitin Co-activators onto ubiquitin-conjugating (E2) enzymes. CDC20/p55CDC Fizzy Cdc20 C-box, WD40 repeats and IR-tail Substrate recognition CDH1 A–D Fizzy-related Cdh1/Hct1 C-box, WD40 repeats and IR-tail Substrate recognition Ubiquitin-conjugating (E2) enzyme - Rap - C-box, WD40 repeats and IR-tail Substrate recognition An enzyme that forms a - - Ama1 C-box, WD40 repeats and IR-tail Substrate recognition thioester bond with a ubiquitin residue, which is - Cortex - C-box, WD40 repeats and IR-tail Substrate recognition transferred to the E2 enzyme *RPN1 and RPN2 are subunits of the 26S proteasome. Ama1, activator of meiotic APC/C protein-1; APC/C, anaphase promoting from ubiquitin-activating (E1) complex/cyclosome; E2, ubiquitin-conjugating enzyme; E3, ubiquitin ligase; Mnd2, meiotic nuclear division protein-2; swm/SWM, enzyme. E2 uses the high spore wall maturation; TPRs, tetratrico peptide repeats; TSG, testis-specific gene. energy from the thioester bond to generate an isopeptide bond between the ubiquitin residue and a lysine reflection of the modularity of the ubiquitin system, APC/C: a cullin–RING-finger ubiquitin ligase. APC/C residue on a substrate in which a few E2 enzymes can interact with different is thought to be a distant relative of the ubiquitin ligase protein. E3 enzymes. Consistent with the possibility that the SCF because both contain subunits with cullin and RING- finger 17–19 SCF transient interaction is a reflection of the modularity of domains . In the APC/C, the cullin domain A multisubunit ubiquitin the ubiquitin system, UBCH5 is a highly promiscuous of Apc2 is associated with the RING-finger domain of ligase complex that is enzyme that can interact with several E3 enzymes, Apc11 (REFS 13,20), which in turn interacts with E2 composed of two scaffolding possibly in contrast to UBCH10, which so far is only enzymes21,22. Remarkably, Apc11 and the E2 enzyme subunits (cullin and Skp1), a known to support APC/C. UBCH5 alone can efficiently catalyse ubiquitylation RING-finger subunit that binds ubiquitin-conjugating In addition to E2 enzymes, APC/C activity is also reactions in vitro, albeit with reduced substrate spe- (E2) enzymes and one of strictly dependent on one of several co-activator cificity, indicating that other APC/C subunits are not many F-box subunits that proteins that associate with APC/C during specific absolutely essential for the E3 activity of APC/C20–22. recruit substrates. periods of the cell cycle. The best studied of these are There is no evidence that Apc11 participates directly in C-box Cdc20 and Cdh1, which are encoded by all known the transfer of ubiquitin residues onto substrates, and A sequence element eukaryotic genomes, but additional meiosis-specific it is therefore generally believed that APC/C serves as (consensus DRF/YIPXR) that APC/C co-activators have been identified in yeast a scaffold that brings E2 enzymes and substrates into was first found in the and D. melanogaster (TABLE 1). All of these proteins close proximity (reviewed in REF. 23). N-terminal region of Cdc20. are characterized by the presence of sequence ele- It remains a big mystery why APC/C is composed It is conserved in all known 11 12,13 APC/C co-activators. ments, known as the C-box and the IR-tail , that of many different subunits (12 have been identified in mediate their binding to APC/C11–13. Also, all APC/C humans and 13 in budding yeast; TABLE 1), although IR-tail co-activators contain a C-terminal WD40 domain that it takes only four proteins to build a functional SCF A sequence element is predicted to fold into a propeller-like structure, and (reviewed in REF. 24). Biochemical fractionation and (consensus IR) at the extreme C terminus of APC/C that is now believed to recognize APC/C substrates by scanning transmission electron microscopy (EM) co-activators and the APC/C interacting with specific recognition elements in these experiments indicate that APC/C from animal cells subunit Doc1.
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