Isolation, Purification and Structural Characterization of Two Novel
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Hypoglycemic Activity and Mechanism of the Sulfated Rhamnose Polysaccharides Chromium(III) Complex in Type 2 Diabetic Mice
Bioorganic Chemistry 88 (2019) 102942 Contents lists available at ScienceDirect Bioorganic Chemistry journal homepage: www.elsevier.com/locate/bioorg Hypoglycemic activity and mechanism of the sulfated rhamnose T polysaccharides chromium(III) complex in type 2 diabetic mice Han Yea, Zhaopeng Shenb, Jiefen Cuia, Yujie Zhua, Yuanyuan Lia, Yongzhou Chia, ⁎ Jingfeng Wanga, Peng Wanga, a College of Food Science and Engineering, Ocean University of China, Qingdao 266003, PR China b College of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, PR China ARTICLE INFO ABSTRACT Keywords: The sulfated rhamnose polysaccharides found in Enteromorpha prolifera belong to a class of unique polyanionic Chromium polysaccharides with high chelation capacity. In this study, a complex of sulfated rhamnose polysaccharides with Glucose metabolism chromium(III) (SRPC) was synthesized, and its effect on type 2 diabetes mellitus (T2DM) in mice fed a high-fat, Hypoglycemic high-sucrose diet was investigated. The molecular weight of SRPC is 4.57 kDa, and its chromium content is Mice 28 μg/mg. Results indicated that mice treated by oral administration of SRPC (10 mg/kg and 30 mg/kg body Sulfated rhamnose polysaccharides mass per day) for 11 weeks showed significantly improved oral glucose tolerance, decreased body mass gain, reduced serum insulin levels, and increased tissue glycogen content relative to T2DM mice (p < 0.01). SRPC treatment improved glucose metabolism via activation of the IR/IRS-2/PI3K/PKB/GSK-3β signaling pathway (which is related to glycogen synthesis) and enhanced glucose transport through insulin signaling casca- de–induced GLUT4 translocation. Because of its effectiveness and stability, SRPC could be used as a therapeutic agent for blood glucose control and a promising nutraceutical for T2DM treatment. -
Structure-Function Relationships of Glucansucrase and Fructansucrase Enzymes from Lactic Acid Bacteria Sacha A
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, Mar. 2006, p. 157–176 Vol. 70, No. 1 1092-2172/06/$08.00ϩ0 doi:10.1128/MMBR.70.1.157–176.2006 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Structure-Function Relationships of Glucansucrase and Fructansucrase Enzymes from Lactic Acid Bacteria Sacha A. F. T. van Hijum,1,2†* Slavko Kralj,1,2† Lukasz K. Ozimek,1,2 Lubbert Dijkhuizen,1,2 and Ineke G. H. van Geel-Schutten1,3 Centre for Carbohydrate Bioprocessing, TNO-University of Groningen,1 and Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen,2 9750 AA Haren, The Netherlands, and Innovative Ingredients and Products Department, TNO Quality of Life, Utrechtseweg 48 3704 HE Zeist, The Netherlands3 INTRODUCTION .......................................................................................................................................................157 NOMENCLATURE AND CLASSIFICATION OF SUCRASE ENZYMES ........................................................158 GLUCANSUCRASES .................................................................................................................................................158 Reactions Catalyzed and Glucan Product Synthesis .........................................................................................161 Glucan synthesis .................................................................................................................................................161 Acceptor reaction ................................................................................................................................................161 -
58. Cross-Induction of the L-Fucose System by L-Rhamnose In
JOURNAL OF BACTERIOLOGY, Aug. 1987, p. 3712-3719 Vol. 169, No. 8 0021-9193/87/083712-08$02.00/0 Copyright © 1987, American Society for Microbiology Cross-Induction of the L-Fucose System by L-Rhamnose in Escherichia coli Y.-M. CHEN,1 J. F. TOBIN,2 Y. ZHU,' R. F. SCHLEIF,2 AND E. C. C. LIN'* Department of Microbiology and Molecular Genetics, Harvard Medical School, Boston, Massachusetts 02115,1 and Department ofBiochemistry, Brandeis University, Waltham, Massachusetts 022542 Received 6 January 1987/Accepted 21 May 1987 Dissimilation of L-fucose as a carbon and energy source by Escherichia coli involves a permease, an isomerase, a kinase, and an aldolase encoded by the fuc regulon at minute 60.2. Utilization of L-rhamnose involves a similar set of proteins encoded by the rha operon at minute 87.7. Both pathways lead to the formation of L-lactaldehyde and dihydroxyacetone phosphate. A common NAD-linked oxidoreductase encoded by fucO serves to reduce L-lactaldehyde to L-1,2-propanediol under anaerobic growth conditions, irrespective of whether the aldehyde is derived from fucose or rhamnose. In this study it was shown that anaerobic growth on rhamnose induces expression of not only thefucO gene but also the entirefuc regulon. Rhamnose is unable to induce the fuc genes in mutants defective in rhaA (encoding L-rhamnose isomerase), rhaB (encoding L-rhamnulose kinase), rhaD (encoding L-rhamnulose 1-phosphate aldolase), rhaR (encoding the positive regulator for the rha structural genes), or fucR (encoding the positive regulator for the fuc regulon). Thus, cross-induction of the L-fucose enzymes by rhamnose requires formation of L-lactaldehyde; either the aldehyde itself or the L-fuculose 1-phosphate (known to be an effector) formed from it then interacts with the fucR-encoded protein to induce the fuc regulon. -
Capsular Polysaccharide of Azotobacter Agilis' Gary H
JOURNAL OF BACTERIOLOGY Vol. 88, No. 6, p. 1695-1699 Decemnber, 1964 Copyright © 1964 American Society for Microbiology Printed in U.S.A. CAPSULAR POLYSACCHARIDE OF AZOTOBACTER AGILIS' GARY H. COHEN2 AND DONALD B. JOHNSTONE Department of Agricultural Biochemistry, University of Vermont, Burlington, Vermont Received for publication 19 June 1964 ABSTRACT is confined to well-defined capsules. To our COHEN, GARY H. (University of Vermont, Bur- knowledge, no reports have appeared in the lington), AND DONALD B. JOHNSTONE. Capsular literature concerning the chemistry of the extra- polysaccharide of Azotobacter agilis. J. Bacteriol. cellular polysaccharide of A. agilis. 88:1695-1699. 1964.-Capsular polysaccharide from Azotobacter agilis strain 132 was recovered from MATERIALS AND METHODS washed cells by alkaline digestion. The polysac- Growth of the organisms. A. agilis (ATCC charide was purified by centrifugation, repeated 12838) used alcohol precipitation, Sevag deproteinization, and throughout this study was originally treatment with ribonuclease and charcoal-cellu- isolated in this laboratory from water (Johnstone, lose. Methods of isolation and purification ap- 1957) and designated in subsequent reports as peared to provide a polymer showing no evidence strain 132 (Johnstone, Pfeffer, and Blanchard, of heterogeneity when examined by chemical and 1959; Johnstone, 1962b). Burk's nitrogen-free physical methods. Colorimetric, paper chromato- broth (Wilson and Knight, 1952) at pH 7.0 graphic, and enzymatic analyses on both intact supplemented with 2% sucrose was inoculated and acid-hydrolyzed polysaccharide indicated with cells growing in the logarithmic phase. that the polymer contained galactose and rham- Cultures were incubated at 31 C in 7.5-liter New nose at a molar ratio of approximately 1.0:0.7. -
The Immunomodulatory Properties of L-Rhamnose
The Immunomodulatory Properties of L-Rhamnose Mimmi Lundahl M.Sc. Immunology Supervisors: Prof. Ed Lavelle and Prof. Eoin Scanlan Report prepared for the degree of Doctor of Philosophy, Immunology School of Biochemistry and Immunology, School of Chemistry Trinity Biomedical Sciences Institute Trinity College Dublin 2020 I hereby certify that this report is entirely my own work, and that the contents have not been published elsewhere in paper or electronic form unless indicated through referencing. i Abstract L-Rhamnose is a non-mammalian monosaccharide ubiquitously found on the surface of both commensal and pathogenic bacteria. Previous publications had identified that L-rhamnose-rich Mycobacterium tuberculosis glycolipids, and their structural derivatives, pHBADs, were able to aid this pathogen’s ability to escape immune elimination by repressing protective immune responses. A key immune cell for combatting M. tuberculosis is the macrophage, an innate immune cell present in essentially all tissues. A distinguishing feature of macrophages is their polarisation combined with plasticity; the ability to adopt distinct phenotypes. These are simplified into the pro-inflammatory and bactericidal, “classically activated” M1 macrophages and the “alternatively activated” Th2-promoting and anti-inflammatory M2 macrophages. To combat M. tuberculosis, M1 macrophage activation is critical. In the research presented herein, it is demonstrated that L-rhamnose skews macrophage polarisation away from a bactericidal phenotype and enhances M2 characteristics. Furthermore, it is revealed that L-rhamnose is capable of inducing macrophage innate memory, causing responses elicited by subsequent stimuli, a week after L-rhamnose incubation, to yield a more anti-inflammatory and anti-bactericidal profile. This is presented both as induction of the regulatory cytokine IL-10, as well as reduced expression of iNOS mRNA. -
Conformational Transition of H-Shaped Branched Polymers
1 Conformational Transition of H-shaped Branched Polymers Ashok Kumar Dasmahapatra* and Venkata Mahanth Sanka Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati – 781039, Assam, India PACS number(s): 83.80.Rs, 87.10.Rt, 82.20.Wt, 61.25.he * Corresponding author: Phone: +91-361-258-2273; Fax: +91-361-258-2291; Email address: [email protected] 2 ABSTRACT We report dynamic Monte Carlo simulation on conformational transition of H-shaped branched polymers by varying main chain (backbone) and side chain (branch) length. H- shaped polymers in comparison with equivalent linear polymers exhibit a depression of theta temperature accompanying with smaller chain dimensions. We observed that the effect of branches on backbone dimension is more pronounced than the reverse, and is attributed to the conformational heterogeneity prevails within the molecule. With increase in branch length, backbone is slightly stretched out in coil and globule state. However, in the pre-collapsed (cf. crumpled globule) state, backbone size decreases with the increase of branch length. We attribute this non-monotonic behavior as the interplay between excluded volume interaction and intra-chain bead-bead attractive interaction during collapse transition. Structural analysis reveals that the inherent conformational heterogeneity promotes the formation of a collapsed structure with segregated backbone and branch units (resembles to “sandwich” or “Janus” morphology) rather an evenly distributed structure comprising of all the units. The shape of the collapsed globule becomes more spherical with increasing either backbone or branch length. 3 I. INTRODUCTION Branched polymers are commodious in preparing tailor-made materials for various applications such as in the area of catalysis1, nanomaterials2, and biomedicines3. -
Electrically Sensing Hachimoji DNA Nucleotides Through a Hybrid Graphene/H-BN Nanopore Cite This: Nanoscale, 2020, 12, 18289 Fábio A
Nanoscale View Article Online PAPER View Journal | View Issue Electrically sensing Hachimoji DNA nucleotides through a hybrid graphene/h-BN nanopore Cite this: Nanoscale, 2020, 12, 18289 Fábio A. L. de Souza, †a Ganesh Sivaraman, †b,g Maria Fyta, †c Ralph H. Scheicher, *†d Wanderlã L. Scopel †e and Rodrigo G. Amorim *†f The feasibility of synthesizing unnatural DNA/RNA has recently been demonstrated, giving rise to new perspectives and challenges in the emerging field of synthetic biology, DNA data storage, and even the search for extraterrestrial life in the universe. In line with this outstanding potential, solid-state nanopores have been extensively explored as promising candidates to pave the way for the next generation of label- free, fast, and low-cost DNA sequencing. In this work, we explore the sensitivity and selectivity of a gra- phene/h-BN based nanopore architecture towards detection and distinction of synthetic Hachimoji nucleobases. The study is based on a combination of density functional theory and the non-equilibrium Green’s function formalism. Our findings show that the artificial nucleobases are weakly binding to the Creative Commons Attribution 3.0 Unported Licence. device, indicating a short residence time in the nanopore during translocation. Significant changes in the Received 9th June 2020, electron transmission properties of the device are noted depending on which artificial nucleobase resides Accepted 7th August 2020 in the nanopore, leading to a sensitivity in distinction of up to 80%. Our results thus indicate that the pro- DOI: 10.1039/d0nr04363j posed nanopore device setup can qualitatively discriminate synthetic nucleobases, thereby opening up rsc.li/nanoscale the feasibility of sequencing even unnatural DNA/RNA. -
The New Architectonics: an Invitation to Structural Biology
THE ANATOMICAL RECORD (NEW ANAT.) 261:198–216, 2000 FEATURE ARTICLE The New Architectonics: An Invitation To Structural Biology CLARENCE E. SCHUTT* AND UNO LINDBERG The philosophy of art might offer an epistemological basis for talking about the complexity of biological molecules in a meaningful way. The analysis of artistic compositions requires the resolution of intrinsic tensions between disparate sensory categories—color, line and form—not unlike those encountered in looking at the surfaces of protein molecules, where charge, polarity, hydrophobicity, and shape compete for our attentions. Complex living systems exhibit behaviors such as contraction waves moving along muscle fibers, or shivers passing through the growth cones of migrating neurons, that are easy to describe with common words, but difficult to explain in terms of the language of chemistry. The problem follows from a lack of everyday experience with processes that move towards equilibrium by switching between crystalline order and chain-like disorder, a commonplace occurrence in the submicroscopic world of proteins. Since most of what is understood about protein function comes from studies of isolated macromolecules in solution, a serious gap exists between what we know and what we would like to know about organized biological systems. Closing this gap can be achieved by recognizing that protein molecules reside in gradients of Gibbs free energy, where local forces and movements can be large compared with Brownian motion. Architectonics, a term borrowed from the philosophical literature, symbolizes the eventual union of the structure of theories—how our minds construct the world—with the theory of structures—or how stability is maintained in the chaotic world of microsystems. -
De Novo Nucleic Acids: a Review of Synthetic Alternatives to DNA and RNA That Could Act As † Bio-Information Storage Molecules
life Review De Novo Nucleic Acids: A Review of Synthetic Alternatives to DNA and RNA That Could Act as y Bio-Information Storage Molecules Kevin G Devine 1 and Sohan Jheeta 2,* 1 School of Human Sciences, London Metropolitan University, 166-220 Holloway Rd, London N7 8BD, UK; [email protected] 2 Network of Researchers on the Chemical Evolution of Life (NoR CEL), Leeds LS7 3RB, UK * Correspondence: [email protected] This paper is dedicated to Professor Colin B Reese, Daniell Professor of Chemistry, Kings College London, y on the occasion of his 90th Birthday. Received: 17 November 2020; Accepted: 9 December 2020; Published: 11 December 2020 Abstract: Modern terran life uses several essential biopolymers like nucleic acids, proteins and polysaccharides. The nucleic acids, DNA and RNA are arguably life’s most important, acting as the stores and translators of genetic information contained in their base sequences, which ultimately manifest themselves in the amino acid sequences of proteins. But just what is it about their structures; an aromatic heterocyclic base appended to a (five-atom ring) sugar-phosphate backbone that enables them to carry out these functions with such high fidelity? In the past three decades, leading chemists have created in their laboratories synthetic analogues of nucleic acids which differ from their natural counterparts in three key areas as follows: (a) replacement of the phosphate moiety with an uncharged analogue, (b) replacement of the pentose sugars ribose and deoxyribose with alternative acyclic, pentose and hexose derivatives and, finally, (c) replacement of the two heterocyclic base pairs adenine/thymine and guanine/cytosine with non-standard analogues that obey the Watson–Crick pairing rules. -
Chain Structure Characterization
CHAIN STRUCTURE CHARACTERIZATION Gregory Beaucage and Amit S. Kulkarni Department of Chemical and Materials Engineering, University of Cincinnati, Cincinnati, Ohio 45221-0012 I. Introduction to Structure in Synthetic Macromolecules a) Dimensionality and Statistical Descriptions b) Chain Persistence and the Kuhn Unit c) Coil Structure and Chain Scaling Transitions d) Measures of Coil Size Rg and Rh II. Local Structure and its Ramifications a) Tacticity c) Branching d) Crystallization e) Hyperbranched Polymers III. Summary 1 I. Introduction to Structure in Synthetic Macromolecules a) Dimensionality and Statistical Descriptions Synthetic polymers display some physical characteristics that we can identify as native to this class of materials, particularly shear thinning rheology, rubber elasticity, and chain folded crystals. These properties are inherent to long-chain linear and weakly branched molecules and are not drastically different across a wide range of chemical make-ups. We can consider these features to define synthetic macromolecules as a distinct category of materials. The realization of this special category of materials necessitated the definition of a structural model broad enough to encompass nylon to polyethylene yet specific enough that detailed analytically available features could be used to define the major properties of interest, especially those native to this class of materials. This structural model for polymer chains is based on the random walk statistics observed by Robert Brown in studies of pollen grains and explained by Einstein in 1905. It is a trivial exercise to construct a random walk on a cubic lattice using a PC, Figure 1. From such a walk we can observe certain features of the general model for a polymer chain. -
Simultaneous Production of Bioactive Compounds for Application In
A publication of CHEMICAL ENGINEERINGTRANSACTIONS VOL. 64, 2018 The Italian Association of Chemical Engineering Online at www.aidic.it/cet Guest Editors: Enrico Bardone, Antonio Marzocchella, Tajalli Keshavarz Copyright © 2018, AIDIC Servizi S.r.l. ISBN978-88-95608- 56-3; ISSN 2283-9216 Simultaneous Production of Bioactive Compounds for Application in Enhanced Oil Recovery Bethânia Felix Ramosa, Lidiane Xisto de Oliveirab, Cristina M Quintellab, Cleveland M. Jonesc, Jacson Nunes Santosa, Leila Cristiane Souzaa, Josilene Lima Matosa, *a Paulo Fernando de Almeida a Biointeraction Sciences Department, Federal University of Bahia, 40110-100, Salvador, Brazil bChemical Institute, Federal University of Bahia, 40110-100, Salvador - BA, Brazil c Instituto Nacional de Óleo e Gás, State University of Rio de Janeiro, 20550-013, Rio de Janeiro - RJ, Brazil [email protected] This research investigated the use of produced water (PW) and raw glycerine, waste products from the oil and biodiesel industry, respectively, as a growth medium and source of nutrients in a bioprocess employing Xanthomonas and Pseudomonas strains, in order to simultaneously produce xanthan gum and rhamnolipids, products already used in enhanced oil recovery (EOR) applications. The xanthan gum and rhamnolipid produced exhibited excellent viscosity and emulsifying activity characteristics, and better pseudoplasic rheological behaviour than conventional chemical EOR compounds. EOR benefits of incremental oil production, coupled with the use of waste products to produce the compounds employed, minimize the environmental impact of EOR methods employing such compounds. Keywords: bioprocess, biopolymer; biosurfactant; EOR; rhamnolipid; xanthan gum; 1. Introduction One of the main residues generated in the various stages of oil and gas production is produced water (PW) (Fakhru’l-Razi et al., 2009). -
Polysaccharides
Polysaccharides: Homopolysaccharide Heteropolysaccharide Glucose is the most common monomer Mostly homo, however, if hetero, it will be two monosaccharides in a repeating sequence Complete characterization of a polysaccharide: monomers, sequence & type of glycosidic linkage Cellulose & chitin: β-glycosidic linkages, and both are structural materials Starch and glycogen: α-glycosidic linkages, and they serve as carbohydrate storage polymers in plants and animals, respectively The major structural component of plants, especially wood and plant fibers A linear polymer of approximately 2800 D-glucose units per molecule joined by β-1,4-glycosidic bonds Extensive intra- and intermolecular hydrogen bonding between chains Cellulases, animals? Energy storage in plants A polymers of α-D-glucose units A mylose (10-20 %): continuous, unbranched chains of up to 4000 α-D-glucose units joined by α-1,4-glycosidic bonds Amylopectin (80-90 %): a highly branched polymer consisting of 24-30 units of D-glucose joined by α-1,4- glycosidic bonds and branches created by α- 1,6-glycosidic bonds Amylases catalyze hydrolysis of α-1,4-glycosidic bonds β-amylase is an exoglycosidase and cleaves from the non- reducing end of the polymer α-amylase is an endoglycosidase and hydrolyzes glycosidic linkages anywhere along the chain to produce glucose and maltose Can amylose & amylopectin be completely degraded to glucose and maltose by the two amylases? Debranching enzymes catalyze the hydrolysis of α-1,6-glycosidic bonds A branched-chain polymer of