2008 Kyosei Workshop
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New CSC Computing Resources
New CSC computing resources Atte Sillanpää, Nino Runeberg CSC – IT Center for Science Ltd. Outline CSC at a glance New Kajaani Data Centre Finland’s new supercomputers – Sisu (Cray XC30) – Taito (HP cluster) CSC resources available for researchers CSC presentation 2 CSC’s Services Funet Services Computing Services Universities Application Services Polytechnics Ministries Data Services for Science and Culture Public sector Information Research centers Management Services Companies FUNET FUNET and Data services – Connections to all higher education institutions in Finland and for 37 state research institutes and other organizations – Network Services and Light paths – Network Security – Funet CERT – eduroam – wireless network roaming – Haka-identity Management – Campus Support – The NORDUnet network Data services – Digital Preservation and Data for Research Data for Research (TTA), National Digital Library (KDK) International collaboration via EU projects (EUDAT, APARSEN, ODE, SIM4RDM) – Database and information services Paituli: GIS service Nic.funet.fi – freely distributable files with FTP since 1990 CSC Stream Database administration services – Memory organizations (Finnish university and polytechnics libraries, Finnish National Audiovisual Archive, Finnish National Archives, Finnish National Gallery) 4 Current HPC System Environment Name Louhi Vuori Type Cray XT4/5 HP Cluster DOB 2007 2010 Nodes 1864 304 CPU Cores 10864 3648 Performance ~110 TFlop/s 34 TF Total memory ~11 TB 5 TB Interconnect Cray QDR IB SeaStar Fat tree 3D Torus CSC -
Petaflops for the People
PETAFLOPS SPOTLIGHT: NERSC housands of researchers have used facilities of the Advanced T Scientific Computing Research (ASCR) program and its EXTREME-WEATHER Department of Energy (DOE) computing predecessors over the past four decades. Their studies of hurricanes, earthquakes, NUMBER-CRUNCHING green-energy technologies and many other basic and applied Certain problems lend themselves to solution by science problems have, in turn, benefited millions of people. computers. Take hurricanes, for instance: They’re They owe it mainly to the capacity provided by the National too big, too dangerous and perhaps too expensive Energy Research Scientific Computing Center (NERSC), the Oak to understand fully without a supercomputer. Ridge Leadership Computing Facility (OLCF) and the Argonne Leadership Computing Facility (ALCF). Using decades of global climate data in a grid comprised of 25-kilometer squares, researchers in These ASCR installations have helped train the advanced Berkeley Lab’s Computational Research Division scientific workforce of the future. Postdoctoral scientists, captured the formation of hurricanes and typhoons graduate students and early-career researchers have worked and the extreme waves that they generate. Those there, learning to configure the world’s most sophisticated same models, when run at resolutions of about supercomputers for their own various and wide-ranging projects. 100 kilometers, missed the tropical cyclones and Cutting-edge supercomputing, once the purview of a small resulting waves, up to 30 meters high. group of experts, has trickled down to the benefit of thousands of investigators in the broader scientific community. Their findings, published inGeophysical Research Letters, demonstrated the importance of running Today, NERSC, at Lawrence Berkeley National Laboratory; climate models at higher resolution. -
Overview of Recent Supercomputers
Overview of recent supercomputers Aad J. van der Steen HPC Research NCF L.J. Costerstraat 5 6827 AR Arnhem The Netherlands [email protected] www.hpcresearch.nl NCF/HPC Research October 2011 Abstract In this report we give an overview of high-performance computers which are currently available or will become available within a short time frame from vendors; no attempt is made to list all machines that are still in the development phase. The machines are described according to their macro-architectural class. The information about the machines is kept as compact as possible. No attempt is made to quote price information as this is often even more elusive than the performance of a system. In addition, some general information about high-performance computer architectures and the various processors and communication networks employed in these systems is given in order to better appreciate the systems information given in this report. This document reflects the technical momentary state of the supercomputer arena as accurately as possible. However, the author nor NCF take any responsibility for errors or mistakes in this document. We encourage anyone who has comments or remarks on the contents to inform us, so we can improve this report. NCF, the National Computing Facilities Foundation, supports and furthers the advancement of tech- nical and scientific research with and into advanced computing facilities and prepares for the Netherlands national supercomputing policy. Advanced computing facilities are multi-processor vectorcomputers, mas- sively parallel computing systems of various architectures and concepts and advanced networking facilities. Contents 1 Introduction and account 2 2 Architecture of high-performance computers 4 2.1 Themainarchitecturalclasses. -
Workload Management and Application Placement for the Cray Linux Environment™
TMTM Workload Management and Application Placement for the Cray Linux Environment™ S–2496–4101 © 2010–2012 Cray Inc. All Rights Reserved. This document or parts thereof may not be reproduced in any form unless permitted by contract or by written permission of Cray Inc. U.S. GOVERNMENT RESTRICTED RIGHTS NOTICE The Computer Software is delivered as "Commercial Computer Software" as defined in DFARS 48 CFR 252.227-7014. All Computer Software and Computer Software Documentation acquired by or for the U.S. Government is provided with Restricted Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7014, as applicable. Technical Data acquired by or for the U.S. Government, if any, is provided with Limited Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7013, as applicable. Cray and Sonexion are federally registered trademarks and Active Manager, Cascade, Cray Apprentice2, Cray Apprentice2 Desktop, Cray C++ Compiling System, Cray CX, Cray CX1, Cray CX1-iWS, Cray CX1-LC, Cray CX1000, Cray CX1000-C, Cray CX1000-G, Cray CX1000-S, Cray CX1000-SC, Cray CX1000-SM, Cray CX1000-HN, Cray Fortran Compiler, Cray Linux Environment, Cray SHMEM, Cray X1, Cray X1E, Cray X2, Cray XD1, Cray XE, Cray XEm, Cray XE5, Cray XE5m, Cray XE6, Cray XE6m, Cray XK6, Cray XK6m, Cray XMT, Cray XR1, Cray XT, Cray XTm, Cray XT3, Cray XT4, Cray XT5, Cray XT5h, Cray XT5m, Cray XT6, Cray XT6m, CrayDoc, CrayPort, CRInform, ECOphlex, LibSci, NodeKARE, RapidArray, The Way to Better Science, Threadstorm, uRiKA, UNICOS/lc, and YarcData are trademarks of Cray Inc. -
Lessons Learned in Deploying the World's Largest Scale Lustre File
Lessons Learned in Deploying the World’s Largest Scale Lustre File System Galen M. Shipman, David A. Dillow, Sarp Oral, Feiyi Wang, Douglas Fuller, Jason Hill, Zhe Zhang Oak Ridge Leadership Computing Facility, Oak Ridge National Laboratory Oak Ridge, TN 37831, USA fgshipman,dillowda,oralhs,fwang2,fullerdj,hilljj,[email protected] Abstract 1 Introduction The Spider system at the Oak Ridge National Labo- The Oak Ridge Leadership Computing Facility ratory’s Leadership Computing Facility (OLCF) is the (OLCF) at Oak Ridge National Laboratory (ORNL) world’s largest scale Lustre parallel file system. Envi- hosts the world’s most powerful supercomputer, sioned as a shared parallel file system capable of de- Jaguar [2, 14, 7], a 2.332 Petaflop/s Cray XT5 [5]. livering both the bandwidth and capacity requirements OLCF also hosts an array of other computational re- of the OLCF’s diverse computational environment, the sources such as a 263 Teraflop/s Cray XT4 [1], visual- project had a number of ambitious goals. To support the ization, and application development platforms. Each of workloads of the OLCF’s diverse computational plat- these systems requires a reliable, high-performance and forms, the aggregate performance and storage capacity scalable file system for data storage. of Spider exceed that of our previously deployed systems Parallel file systems on leadership-class systems have by a factor of 6x - 240 GB/sec, and 17x - 10 Petabytes, traditionally been tightly coupled to single simulation respectively. Furthermore, Spider supports over 26,000 platforms. This approach had resulted in the deploy- clients concurrently accessing the file system, which ex- ment of a dedicated file system for each computational ceeds our previously deployed systems by nearly 4x. -
Titan: a New Leadership Computer for Science
Titan: A New Leadership Computer for Science Presented to: DOE Advanced Scientific Computing Advisory Committee November 1, 2011 Arthur S. Bland OLCF Project Director Office of Science Statement of Mission Need • Increase the computational resources of the Leadership Computing Facilities by 20-40 petaflops • INCITE program is oversubscribed • Programmatic requirements for leadership computing continue to grow • Needed to avoid an unacceptable gap between the needs of the science programs and the available resources • Approved: Raymond Orbach January 9, 2009 • The OLCF-3 project comes out of this requirement 2 ASCAC – Nov. 1, 2011 Arthur Bland INCITE is 2.5 to 3.5 times oversubscribed 2007 2008 2009 2010 2011 2012 3 ASCAC – Nov. 1, 2011 Arthur Bland What is OLCF-3 • The next phase of the Leadership Computing Facility program at ORNL • An upgrade of Jaguar from 2.3 Petaflops (peak) today to between 10 and 20 PF by the end of 2012 with operations in 2013 • Built with Cray’s newest XK6 compute blades • When completed, the new system will be called Titan 4 ASCAC – Nov. 1, 2011 Arthur Bland Cray XK6 Compute Node XK6 Compute Node Characteristics AMD Opteron 6200 “Interlagos” 16 core processor @ 2.2GHz Tesla M2090 “Fermi” @ 665 GF with 6GB GDDR5 memory Host Memory 32GB 1600 MHz DDR3 Gemini High Speed Interconnect Upgradeable to NVIDIA’s next generation “Kepler” processor in 2012 Four compute nodes per XK6 blade. 24 blades per rack 5 ASCAC – Nov. 1, 2011 Arthur Bland ORNL’s “Titan” System • Upgrade of existing Jaguar Cray XT5 • Cray Linux Environment -
Musings RIK FARROWOPINION
Musings RIK FARROWOPINION Rik is the editor of ;login:. While preparing this issue of ;login:, I found myself falling down a rabbit hole, like [email protected] Alice in Wonderland . And when I hit bottom, all I could do was look around and puzzle about what I discovered there . My adventures started with a casual com- ment, made by an ex-Cray Research employee, about the design of current super- computers . He told me that today’s supercomputers cannot perform some of the tasks that they are designed for, and used weather forecasting as his example . I was stunned . Could this be true? Or was I just being dragged down some fictional rabbit hole? I decided to learn more about supercomputer history . Supercomputers It is humbling to learn about the early history of computer design . Things we take for granted, such as pipelining instructions and vector processing, were impor- tant inventions in the 1970s . The first supercomputers were built from discrete components—that is, transistors soldered to circuit boards—and had clock speeds in the tens of nanoseconds . To put that in real terms, the Control Data Corpora- tion’s (CDC) 7600 had a clock cycle of 27 .5 ns, or in today’s terms, 36 4. MHz . This was CDC’s second supercomputer (the 6600 was first), but included instruction pipelining, an invention of Seymour Cray . The CDC 7600 peaked at 36 MFLOPS, but generally got 10 MFLOPS with carefully tuned code . The other cool thing about the CDC 7600 was that it broke down at least once a day . -
Cray XT and Cray XE Y Y System Overview
Crayyy XT and Cray XE System Overview Customer Documentation and Training Overview Topics • System Overview – Cabinets, Chassis, and Blades – Compute and Service Nodes – Components of a Node Opteron Processor SeaStar ASIC • Portals API Design Gemini ASIC • System Networks • Interconnection Topologies 10/18/2010 Cray Private 2 Cray XT System 10/18/2010 Cray Private 3 System Overview Y Z GigE X 10 GigE GigE SMW Fibre Channels RAID Subsystem Compute node Login node Network node Boot /Syslog/Database nodes 10/18/2010 Cray Private I/O and Metadata nodes 4 Cabinet – The cabinet contains three chassis, a blower for cooling, a power distribution unit (PDU), a control system (CRMS), and the compute and service blades (modules) – All components of the system are air cooled A blower in the bottom of the cabinet cools the blades within the cabinet • Other rack-mounted devices within the cabinet have their own internal fans for cooling – The PDU is located behind the blower in the back of the cabinet 10/18/2010 Cray Private 5 Liquid Cooled Cabinets Heat exchanger Heat exchanger (XT5-HE LC only) (LC cabinets only) 48Vdc flexible Cage 2 buses Cage 2 Cage 1 Cage 1 Cage VRMs Cage 0 Cage 0 backplane assembly Cage ID controller Interconnect 01234567 Heat exchanger network cable Cage inlet (LC cabinets only) connection air temp sensor Airflow Heat exchanger (slot 3 rail) conditioner 48Vdc shelf 3 (XT5-HE LC only) 48Vdc shelf 2 L1 controller 48Vdc shelf 1 Blower speed controller (VFD) Blooewer PDU line filter XDP temperature XDP interface & humidity sensor -
Parallelization Hardware Architecture Type to Enter Text
Parallelization Hardware architecture Type to enter text Delft University of Technology Challenge the future Contents • Introduction • Classification of systems • Topology • Clusters and Grid • Fun Hardware 2 hybrid parallel vector superscalar scalar 3 Why Parallel Computing Primary reasons: • Save time • Solve larger problems • Provide concurrency (do multiple things at the same time) Classification of HPC hardware • Architecture • Memory organization 5 1st Classification: Architecture • There are several different methods used to classify computers • No single taxonomy fits all designs • Flynn's taxonomy uses the relationship of program instructions to program data • SISD - Single Instruction, Single Data Stream • SIMD - Single Instruction, Multiple Data Stream • MISD - Multiple Instruction, Single Data Stream • MIMD - Multiple Instruction, Multiple Data Stream 6 Flynn’s Taxonomy • SISD: single instruction and single data stream: uniprocessor • SIMD: vector architectures: lower flexibility • MISD: no commercial multiprocessor: imagine data going through a pipeline of execution engines • MIMD: most multiprocessors today: easy to construct with off-the-shelf computers, most flexibility 7 SISD • One instruction stream • One data stream • One instruction issued on each clock cycle • One instruction executed on single element(s) of data (scalar) at a time • Traditional ‘von Neumann’ architecture (remember from introduction) 8 SIMD • Also von Neumann architectures but more powerful instructions • Each instruction may operate on more than one data element • Usually intermediate host executes program logic and broadcasts instructions to other processors • Synchronous (lockstep) • Rating how fast these machines can issue instructions is not a good measure of their performance • Two major types: • Vector SIMD • Parallel SIMD 9 Vector SIMD • Single instruction results in multiple operands being updated • Scalar processing operates on single data elements. -
Pubtex Output 2006.05.15:1001
Cray XD1™ Release Description Private S–2453–14 © 2006 Cray Inc. All Rights Reserved. Unpublished Private Information. This unpublished work is protected to trade secret, copyright and other laws. Except as permitted by contract or express written permission of Cray Inc., no part of this work or its content may be used, reproduced or disclosed in any form. U.S. GOVERNMENT RESTRICTED RIGHTS NOTICE The Computer Software is delivered as "Commercial Computer Software" as defined in DFARS 48 CFR 252.227-7014. All Computer Software and Computer Software Documentation acquired by or for the U.S. Government is provided with Restricted Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7014, as applicable. Technical Data acquired by or for the U.S. Government, if any, is provided with Limited Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7013, as applicable. Autotasking, Cray, Cray Channels, Cray Y-MP, GigaRing, LibSci, UNICOS and UNICOS/mk are federally registered trademarks and Active Manager, CCI, CCMT, CF77, CF90, CFT, CFT2, CFT77, ConCurrent Maintenance Tools, COS, Cray Ada, Cray Animation Theater, Cray APP, Cray Apprentice2, Cray C++ Compiling System, Cray C90, Cray C90D, Cray CF90, Cray EL, Cray Fortran Compiler, Cray J90, Cray J90se, Cray J916, Cray J932, Cray MTA, Cray MTA-2, Cray MTX, Cray NQS, Cray Research, Cray SeaStar, Cray S-MP, -
Jaguar Supercomputer
Jaguar Supercomputer Jake Baskin '10, Jānis Lībeks '10 Jan 27, 2010 What is it? Currently the fastest supercomputer in the world, at up to 2.33 PFLOPS, located at Oak Ridge National Laboratory (ORNL). Leader in "petascale scientific supercomputing". Uses Massively parallel simulations. Modeling: Climate Supernovas Volcanoes Cellulose http://www.nccs.gov/wp- content/themes/nightfall/img/jaguarXT5/gallery/jaguar-1.jpg Overview Processor Specifics Network Architecture Programming Models NCCS networking Spider file system Scalability The guts 84 XT4 and 200 XT5 cabinets XT5 18688 compute nodes 256 service and i/o nodes XT4 7832 compute nodes 116 service and i/o nodes (XT5) Compute Nodes 2 Opteron 2435 Istanbul (6 core) processors per node 64K L1 instruction cache 65K L1 data cache per core 512KB L2 cache per core 6MB L3 cache per processor (shared) 8GB of DDR2-800 RAM directly attached to each processor by integrated memory controller. http://www.cray.com/Assets/PDF/products/xt/CrayXT5Brochure.pdf How are they organized? 3-D Torus topology XT5 and XT4 segments are connected by an InfiniBand DDR network 889 GB/sec bisectional bandwidth http://www.cray.com/Assets/PDF/products/xt/CrayXT5Brochure.pdf Programming Models Jaguar supports these programming models: MPI (Message Passing Interface) OpenMP (Open Multi Processing) SHMEM (SHared MEMory access library) PGAS (Partitioned global address space) NCCS networking Jaguar usually performs computations on large datasets. These datasets have to be transferred to ORNL. Jaguar is connected to ESnet (Energy Sciences Network, scientific institutions) and Internet2 (higher education institutions). ORNL owns its own optical network that allows 10Gb/s to various locations around the US. -
Jaguar and Kraken -The World's Most Powerful Computer Systems
Jaguar and Kraken -The World's Most Powerful Computer Systems Arthur Bland Cray Users’ Group 2010 Meeting Edinburgh, UK May 25, 2010 Abstract & Outline At the SC'09 conference in November 2009, Jaguar and Kraken, both located at ORNL, were crowned as the world's fastest computers (#1 & #3) by the web site www.Top500.org. In this paper, we will describe the systems, present results from a number of benchmarks and applications, and talk about future computing in the Oak Ridge Leadership Computing Facility. • Cray computer systems at ORNL • System Architecture • Awards and Results • Science Results • Exascale Roadmap 2 CUG2010 – Arthur Bland Jaguar PF: World’s most powerful computer— Designed for science from the ground up Peak performance 2.332 PF System memory 300 TB Disk space 10 PB Disk bandwidth 240+ GB/s Based on the Sandia & Cray Compute Nodes 18,688 designed Red Storm System AMD “Istanbul” Sockets 37,376 Size 4,600 feet2 Cabinets 200 3 CUG2010 – Arthur Bland (8 rows of 25 cabinets) Peak performance 1.03 petaflops Kraken System memory 129 TB World’s most powerful Disk space 3.3 PB academic computer Disk bandwidth 30 GB/s Compute Nodes 8,256 AMD “Istanbul” Sockets 16,512 Size 2,100 feet2 Cabinets 88 (4 rows of 22) 4 CUG2010 – Arthur Bland Climate Modeling Research System Part of a research collaboration in climate science between ORNL and NOAA (National Oceanographic and Atmospheric Administration) • Phased System Delivery • Total System Memory – CMRS.1 (June 2010) 260 TF – 248 TB DDR3-1333 – CMRS.2 (June 2011) 720 TF • File Systems