Antimicrobial Drug Resistance in Corynebacterium Diphtheriae Mitis
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ID 2 | Issue No: 4.1 | Issue Date: 29.10.14 | Page: 1 of 24 © Crown Copyright 2014 Identification of Corynebacterium Species
UK Standards for Microbiology Investigations Identification of Corynebacterium species Issued by the Standards Unit, Microbiology Services, PHE Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 1 of 24 © Crown copyright 2014 Identification of Corynebacterium species Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website https://www.gov.uk/uk- standards-for-microbiology-investigations-smi-quality-and-consistency-in-clinical- laboratories. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see https://www.gov.uk/government/groups/standards-for-microbiology-investigations- steering-committee). The contributions of many individuals in clinical, specialist and reference laboratories who have provided information and comments during the development of this document are acknowledged. We are grateful to the Medical Editors for editing the medical content. For further information please contact us at: Standards Unit Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ E-mail: [email protected] Website: https://www.gov.uk/uk-standards-for-microbiology-investigations-smi-quality- and-consistency-in-clinical-laboratories UK Standards for Microbiology Investigations are produced in association with: Logos correct at time of publishing. Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 2 of 24 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Identification of Corynebacterium species Contents ACKNOWLEDGMENTS ......................................................................................................... -
The Influence of Social Conditions Upon Diphtheria, Measles, Tuberculosis and Whooping Cough in Early Childhood in London
VOLUME 42, No. 5 OCTOBER 1942 THE INFLUENCE OF SOCIAL CONDITIONS UPON DIPHTHERIA, MEASLES, TUBERCULOSIS AND WHOOPING COUGH IN EARLY CHILDHOOD IN LONDON BY G. PAYLING WRIGHT AND HELEN PAYLING WRIGHT, From the Department of Pathology-, Guy's Hospital Medical School (With 1 Figure in the Text) Before the war diphtheria, measles, tuberculosis and whooping cough were the most important of the better-defined causes of death amongst young children in the London area. The large numbers of deaths registered from these four diseases in the age group 0-4 years in the Metropolitan Boroughs alone between 1931 and 1938, together with the deaths recorded under bronchitis and pneumonia, are set out in Table 1. These records Table 1. Deaths from diphtheria, measles, tuberculosis (all forms), whooping cough, bron- chitis and pneumonia amongst children, 0-4 years, in the Metropolitan Boroughs from 1931 to 1938 Whooping Year Diphtheria Measles Tuberculosis cough Bronchitis Pneumonia 1931 148 109 184 301 195 1394 1932 169 760 207 337 164 1009 1933 163 88 150 313 101 833 1934 232 783 136 ' 277 167 1192 1935 125 17 108 161 119 726 1936 113 539 122 267 147 918 1937 107 21 100 237 122 827 1938 90 217 118 101 109 719 for diphtheria, measles, tuberculosis and whooping cough fail, however, to show all the deaths that should properly be ascribed to these specific diseases. For the most part, the figures represent the deaths occurring during their more acute stages, and necessarily omit some of the many instances in which these infections, after giving rise to chronic disabilities, terminate fatally from some less well-specified cause. -
Elizabeth Gyamfi
University of Ghana http://ugspace.ug.edu.gh GENOTYPING AND TREATMENT OF SECONDARY BACTERIAL INFECTIONS AMONG BURULI ULCER PATIENTS IN THE AMANSIE CENTRAL DISTRICT OF GHANA BY ELIZABETH GYAMFI (10442509) THIS THESIS IS SUBMITTED TO THE UNIVERSITY OF GHANA, LEGON IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE AWARD OF A MASTER OF PHILOSOPHY DEGREE IN MEDICAL BIOCHEMISTRY JULY, 2015 University of Ghana http://ugspace.ug.edu.gh DECLARATION I ELIZABETH GYAMFI, do hereby declare that with the exception of references to other people’s work, which have been duly acknowledged, this thesis is the outcome of my own research conducted at the Department of Medical Biochemistry, University of Ghana Medical School, College of Health Sciences and the Department of Cell, Molecular Biology and Biochemistry, University of Ghana, College of Basic and Applied Science under the supervision of Dr. Lydia Mosi and Dr. Bartholomew Dzudzor. Neither all nor parts of this project have been presented for another degree elsewhere. ……………………………………………. Date: ………………………. ELIZABETH GYAMFI (Student) ……………………………………………. Date: ………………………… DR. LYDIA MOSI (Supervisor) ………………………………………….. Date: ……………………….. DR. BATHOLOMEW DZUDZOR (Supervisor) i University of Ghana http://ugspace.ug.edu.gh ABSTRACT Background Buruli ulcer (BU) is a skin disease caused by Mycobacterium ulcerans. BU is the third most common mycobacterial disease after tuberculosis and leprosy, but in Ghana and Cote d’ Ivoire, it is the second. M. ulcerans produces mycolactone, an immunosuppressant macrolide toxin which makes the infection painless. However, some patients have complained of painful lesions and delay healing. Painful ulcers and delay healing experienced by some patients may be due to secondary bacterial infections. Main Objective: To identify secondary microbial infections of BU patients, their genetic diversity as well as determine the levels of antibiotics resistance of these microorganisms. -
Mycobacterium Tuberculosis: Assessing Your Laboratory
A more recent version of this document exists. View the 2019 Edition. Mycobacterium tuberculosis: Assessing Your Laboratory APHL Tool 2013 EDITION The following individuals contributed to the preparation of this edition of Mycobacterium tuberculosis: Assessing Your Laboratory Phyllis Della-Latta, PhD Columbia Presbyterian Medical Center Loretta Gjeltena, MA, MT(ASCP) National Laboratory Training Network Kenneth Jost, Jr. Texas Department of State Health Services Beverly Metchock, DrPH Centers for Disease Control and Prevention Glenn D. Roberts, PhD Mayo Clinic Max Salfinger, MD Florida Department of Health, Florida Bureau of Laboratories Dale Schwab, PhD, D(ABMM) Quest Diagnostics Julie Tans-Kersten Wisconsin State Laboratory of Hygiene Anthony Tran, MPH, MT(ASCP) Association of Public Health Laboratories David Warshauer, PhD, D(ABMM) Wisconsin State Laboratory of Hygiene Gail Woods, MD University of Texas Medical Branch Kelly Wroblewski, MPH, MT(ASCP) Association of Public Health Laboratories This publication was supported by Cooperative Agreement Number #1U60HM000803 between the Centers for Disease Control and Prevention (CDC) and the Association of Public Health Laboratories (APHL). Its contents are solely the responsibility of the authors and do not necessarily represent the official views of CDC. © Copyright 2013, Association of Public Health Laboratories. All Rights Reserved. Table of Contents 1.0 Introduction ...................................................4 Background ...................................................4 Intended -
Biosynthesis of Isonitrile Lipopeptides by Conserved Nonribosomal Peptide Synthetase Gene Clusters in Actinobacteria
Biosynthesis of isonitrile lipopeptides by conserved nonribosomal peptide synthetase gene clusters in Actinobacteria Nicholas C. Harrisa, Michio Satob, Nicolaus A. Hermanc, Frederick Twiggc, Wenlong Caic, Joyce Liud, Xuejun Zhuc, Jordan Downeyc, Ryan Khalafe, Joelle Martine, Hiroyuki Koshinof, and Wenjun Zhangc,g,1 aDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; bDepartment of Pharmaceutical Sciences, University of Shizuoka, Shizuoka 422-8526, Japan; cDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720; dDepartment of Bioengineering, University of California, Berkeley, CA 94720; eDepartment of Chemistry, University of California, Berkeley, CA 94720; fRIKEN Physical Center for Sustainable Resource Science, Wako, Saitama 3510198, Japan; and gChan Zuckerberg Biohub, San Francisco, CA 94158 Edited by Jerrold Meinwald, Cornell University, Ithaca, NY, and approved May 26, 2017 (received for review March 27, 2017) A putative lipopeptide biosynthetic gene cluster is conserved in many dependent oxidase, a fatty acyl-CoA thioesterase, an acyl-acyl species of Actinobacteria, including Mycobacterium tuberculosis and carrier protein ligase (AAL), an acyl carrier protein (ACP), and M. marinum, but the specific function of the encoding proteins has a single- or dimodule NRPS, respectively (Fig. 1 and SI Appendix, been elusive. Using both in vivo heterologous reconstitution and Fig. S1). Although all of these five proteins are typically involved in in vitro biochemical analyses, we have revealed that the five encod- secondary metabolite biosynthesis, the identity of the correspond- ing biosynthetic enzymes are capable of synthesizing a family of ing metabolite and the specific function of these proteins have not isonitrile lipopeptides (INLPs) through a thio-template mechanism. -
NGS-Based Phylogeny of Diphtheria-Related Pathogenicity Factors in Different Corynebacterium Spp
Dangel et al. BMC Microbiology (2019) 19:28 https://doi.org/10.1186/s12866-019-1402-1 RESEARCHARTICLE Open Access NGS-based phylogeny of diphtheria-related pathogenicity factors in different Corynebacterium spp. implies species- specific virulence transmission Alexandra Dangel1* , Anja Berger1,2*, Regina Konrad1 and Andreas Sing1,2 Abstract Background: Diphtheria toxin (DT) is produced by toxigenic strains of the human pathogen Corynebacterium diphtheriae as well as zoonotic C. ulcerans and C. pseudotuberculosis. Toxigenic strains may cause severe respiratory diphtheria, myocarditis, neurological damage or cutaneous diphtheria. The DT encoding tox gene is located in a mobile genomic region and tox variability between C. diphtheriae and C. ulcerans has been postulated based on sequences of a few isolates. In contrast, species-specific sequence analysis of the diphtheria toxin repressor gene (dtxR), occurring both in toxigenic and non-toxigenic Corynebacterium species, has not been done yet. We used whole genome sequencing data from 91 toxigenic and 46 non-toxigenic isolates of different pathogenic Corynebacterium species of animal or human origin to elucidate differences in extracted DT, DtxR and tox-surrounding genetic elements by a phylogenetic analysis in a large sample set. Results: Sequences of both DT and DtxR, extracted from whole genome sequencing data, could be classified in four distinct, nearly species-specific clades, corresponding to C. diphtheriae, C. pseudotuberculosis, C. ulcerans and atypical C. ulcerans from a non-toxigenic toxin gene-bearing wildlife cluster. Average amino acid similarities were above 99% for DT and DtxR within the four groups, but lower between them. For DT, subgroups below species level could be identified, correlating with different tox-comprising mobile genetic elements. -
Is a Novel Proteasome Interactor in Mycobacteria and Related
RESEARCH ARTICLE Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms Michal Ziemski1, Ahmad Jomaa1, Daniel Mayer2, Sonja Rutz1, Christoph Giese1, Dmitry Veprintsev2†, Eilika Weber-Ban1* 1Institute of Molecular Biology & Biophysics, ETH Zurich, Zurich, Switzerland; 2Laboratory of Biomolecular Research, Paul Scherrer Institute, ETH Zurich, Villigen, Switzerland Abstract Cdc48 is a AAA+ ATPase that plays an essential role for many cellular processes in eukaryotic cells. An archaeal homologue of this highly conserved enzyme was shown to directly interact with the 20S proteasome. Here, we analyze the occurrence and phylogeny of a Cdc48 homologue in Actinobacteria and assess its cellular function and possible interaction with the bacterial proteasome. Our data demonstrate that Cdc48-like protein of actinobacteria (Cpa) forms hexameric rings and that the oligomeric state correlates directly with the ATPase activity. Furthermore, we show that the assembled Cpa rings can physically interact with the 20S core particle. Comparison of the Mycobacterium smegmatis wild-type with a cpa knockout strain under carbon starvation uncovers significant changes in the levels of around 500 proteins. Pathway mapping of the observed pattern of changes identifies ribosomal proteins as a particular hotspot, *For correspondence: [email protected] pointing amongst others toward a role of Cpa in ribosome adaptation during starvation. DOI: https://doi.org/10.7554/eLife.34055.001 Present address: †Centre of Membrane Proteins and Receptors, University of Birmingham and University of Introduction Nottingham, Nottingham, United Kingdom Energy-dependent chaperones and chaperone-protease complexes comprise important cellular components guarding protein homeostasis in all kingdoms of life. -
Diphtheria. In: Epidemiology and Prevention of Vaccine
Diphtheria Anna M. Acosta, MD; Pedro L. Moro, MD, MPH; Susan Hariri, PhD; and Tejpratap S.P. Tiwari, MD Diphtheria is an acute, bacterial disease caused by toxin- producing strains of Corynebacterium diphtheriae. The name Diphtheria of the disease is derived from the Greek diphthera, meaning ● Described by Hippocrates in ‘leather hide.’ The disease was described in the 5th century 5th century BCE BCE by Hippocrates, and epidemics were described in the ● Epidemics described in 6th century AD by Aetius. The bacterium was first observed 6th century in diphtheritic membranes by Edwin Klebs in 1883 and cultivated by Friedrich Löffler in 1884. Beginning in the early ● Bacterium first observed in 1900s, prophylaxis was attempted with combinations of toxin 1883 and cultivated in 1884 and antitoxin. Diphtheria toxoid was developed in the early ● Diphtheria toxoid developed 7 1920s but was not widely used until the early 1930s. It was in 1920s incorporated with tetanus toxoid and pertussis vaccine and became routinely used in the 1940s. Corynebacterium diphtheria Corynebacterium diphtheriae ● Aerobic gram-positive bacillus C. diphtheriae is an aerobic, gram-positive bacillus. ● Toxin production occurs Toxin production (toxigenicity) occurs only when the when bacillus is infected bacillus is itself infected (lysogenized) by specific viruses by corynebacteriophages (corynebacteriophages) carrying the genetic information for carrying tox gene the toxin (tox gene). Diphtheria toxin causes the local and systemic manifestations of diphtheria. ● Four biotypes: gravis, intermedius, mitis, and belfanti C. diphtheriae has four biotypes: gravis, intermedius, mitis, ● All isolates should be tested and belfanti. All biotypes can become toxigenic and cause for toxigenicity severe disease. -
Information Sheet Immunization and TB Requirements for Health Career Programs
Information Sheet Immunization and TB Requirements For Health Career Programs Why is immunization important for students in health career programs? Health care providers are at risk of exposure to, and possible transmission of, preventable diseases. Risk of communicable diseases in the workplace is due to health care providers contact with infected patients or infective material from patients. Maintenance of immunity is therefore an essential part of prevention and infection control. Vaccinating health care providers helps protect their health and prevent disease transmission between patients and providers and among providers and their family and friends outside the workplace. What routine immunizations and screenings are required? The vaccines required are Tetanus, Diphtheria, and Pertussis (Tdap), Measles (Rubeola), Mumps and Rubella (MMR), Varicella, and Influenza. Positive Rubella Titer is required in addition to MMR vaccination. Students must also be tested for TB on an annual basis. Tetanus, Diphtheria and Pertussis (required) Diphtheria is a serious communicable disease, causing death in 5-10 percent of cases with the highest rates among the very young and the elderly. Diphtheria disease is most common and most severe in non-immunized or partially immunized individuals. Protection from vaccine decreases over time unless periodic boosters are given. Tetanus is an acute and often fatal disease. While rare, cases have been reported that are associated with injection drug use, animal bites and wounds contaminated with dirt, feces or saliva. Pertussis (whooping cough) is very contagious and can cause serious illness―especially in infants too young to be fully vaccinated. Pertussis vaccines are recommended for children, teens, and adults, including pregnant women Immunization against tetanus, diphtheria, and pertussis is recommended for all adults in the USA and required for students in health career programs at HACC. -
Mycobacterium Bovis Isolates with M. Tuberculosis Specific Characteristics
gene (6). Furthermore, MTBC isolates can be differentiat- Mycobacterium ed by large sequence polymorphisms or regions of differ- ence (RD), and according to their distribution in the bovis Isolates with genome, a new phylogenetic scenario for the different species of the MTBC has been suggested (7–9). The pres- M. tuberculosis ence or absence of particular deletions has been proposed as being discriminative, e.g., lack of TdB1 for M. tubercu- Specific losis or lack of RD12 for M. bovis. In routine diagnostics, the combination of phenotypic Characteristics characteristics and biochemical features is sufficient to dif- ferentiate clinical M. bovis isolates, and in general, the Tanja Kubica,* Rimma Agzamova,† results obtained are unambiguous. However, here we Abigail Wright,‡ Galimzhan Rakishev,† describe the characteristics of 8 strains of the MTBC that Sabine Rüsch-Gerdes,* and Stefan Niemann* showed an unusual combination of phenotypic and bio- Our study is the first report of exceptional chemical attributes of both M. bovis and M. tuberculosis. Mycobacterium bovis strains that have some characteris- Molecular analyses confirmed the strains as M. bovis, tics of M. tuberculosis. The strains were isolated from 8 which in part have phenotypic and biochemical properties patients living in Kazakhstan. While molecular markers of M. tuberculosis. were typical for M. bovis, growth characteristics and bio- chemical test results were intermediate between M. bovis The Study and M. tuberculosis. During a previous investigation of 179 drug-resistant isolates from Kazakhstan (10), we determined the presence ycobacterium bovis causes tuberculosis (TB) mainly of 8 strains showing monoresistance to pyrazinamide. M in cattle but has a broad host range and causes dis- Kazakhstan is the largest of the central Asian republics and ease similar to that caused by M. -
(Buruli Ulcer) in Rural Hospital, Southern Benin, 1997–2001 Martine Debacker,* Julia Aguiar,† Christian Steunou,† Claude Zinsou,*† Wayne M
Mycobacterium ulcerans Disease (Buruli Ulcer) in Rural Hospital, Southern Benin, 1997–2001 Martine Debacker,* Julia Aguiar,† Christian Steunou,† Claude Zinsou,*† Wayne M. Meyers,‡ Augustin Guédénon,§ Janet T. Scott,* Michèle Dramaix,¶ and Françoise Portaels* Data from 1,700 patients living in southern Benin were Even though large numbers of patients have been collected at the Centre Sanitaire et Nutritionnel Gbemoten, reported, the epidemiology of BU remains obscure, even in Zagnanado, Benin, from 1997 through 2001. In the Zou disease-endemic countries. In 1997, a first report was pub- region in 1999, Buruli ulcer (BU) had a higher detection rate lished on 867 BU patients from the Republic of Benin (21.5/100,000) than leprosy (13.4/100,000) and tuberculo- (West Africa) for 1989–1996 (4). Our study covers the sis (20.0/100,000). More than 13% of the patients had osteomyelitis. Delay in seeking treatment declined from 4 ensuing 5 years (1997 to 2001), during which a collabora- months in 1989 to 1 month in 2001, and median hospital- tive project was initiated to improve detection and control ization time decreased from 9 months in 1989 to 1 month of BU. This study describes BU in Benin and presents in 2001. This reduction is attributed, in part, to implement- demographic trends and epidemiologic data from the four ing an international cooperation program, creating a nation- southern regions of Benin (Zou, Oueme, Mono, and al BU program, and making advances in patient care. Atlantique), as seen in a rural hospital in the Zou Region. uruli ulcer (BU), caused by Mycobacterium ulcerans, Patients and Methods Bis the third most common mycobacterial disease in Our observations are based on 1,700 consecutive humans after tuberculosis and leprosy (1). -
Mycobacterium Bovis BCG As a Delivery System for the Dtb Gene Antigen from Diphtheria Toxin
American Journal of Molecular Biology, 2017, 7, 176-189 http://www.scirp.org/journal/ajmb ISSN Online: 2161-6663 ISSN Print: 2161-6620 Mycobacterium bovis BCG as a Delivery System for the dtb Gene Antigen from Diphtheria Toxin Dilzamar V. Nascimento1,4, Odir A. Dellagostin2, Denise C. S. Matos3, Douglas McIntosh5, Raphael Hirata Jr.1, Geraldo M. B. Pereira1,4, Ana Luíza Mattos-Guaraldi1, Geraldo R. G. Armôa4* 1Faculdade de Ciências Médicas, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil 2Núcleo de Biotecnologia, Universidade Federal de Pelotas, Campus Universitário, Pelotas, Brazil 3Instituto de Tecnologia em Imunobiológicos, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil 4Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil 5Instituto de Veterinária, Universidade Federal Rural do Rio de Janeiro, Seropedica, Rio de Janeiro, Brazil How to cite this paper: Nascimento, D.V., Abstract Dellagostin, O.A., Matos, D.C.S., McIntosh, D., Hirata Jr., R., Pereira, G.M.B., Mat- Diphtheria is a fulminant bacterial disease caused by toxigenic strains of Co- tos-Guaraldi, A.L. and Armôa, G.R.G. rynebacterium diphtheriae whose local and systemic manifestations are due to (2017) Mycobacterium bovis BCG as a the action of the diphtheria toxin (DT). The vaccine which is used to prevent Delivery System for the dtb Gene Antigen from Diphtheria Toxin. American Journal diphtheria worldwide is a toxoid obtained by detoxifying DT. Although asso- of Molecular Biology, 7, 176-189. ciated with high efficacy in the prevention of disease, the current an- https://doi.org/10.4236/ajmb.2017.74014 ti-diphtheria vaccine, one of the components of DTP (diphtheria, tetanus and Received: April 17, 2017 pertussis triple vaccine), may present post vaccination effects such as toxicity Accepted: September 27, 2017 and reactogenicity resulting from the presence of contaminants in the vaccine Published: September 30, 2017 that originated during the process of production and/or detoxification.