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Barcoding Eukaryotic Richness Beyond the Animal, Plant, and Fungal Kingdoms
Community Page CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms Jan Pawlowski1*, Ste´phane Audic2, Sina Adl3, David Bass4, Lassaaˆd Belbahri5,Ce´dric Berney4, Samuel S. Bowser6, Ivan Cepicka7, Johan Decelle2, Micah Dunthorn8, Anna Maria Fiore-Donno9, Gillian H. Gile10, Maria Holzmann1, Regine Jahn11, Miloslav Jirku˚ 12, Patrick J. Keeling13, Martin Kostka12,14, Alexander Kudryavtsev1,15, Enrique Lara5, Julius Lukesˇ12,14, David G. Mann16, Edward A. D. Mitchell5, Frank Nitsche17, Maria Romeralo18, Gary W. Saunders19, Alastair G. B. Simpson20, Alexey V. Smirnov15, John L. Spouge21, Rowena F. Stern22, Thorsten Stoeck8, Jonas Zimmermann11,23, David Schindel24, Colomban de Vargas2* 1 Department of Genetics and Evolution, University of Geneva, Geneva, Switzerland, 2 Centre National de la Recherche Scientifique, Unite´ Mixte de Recherche 7144 and Universite´ Pierre et Marie Curie, Paris 6, Station Biologique de Roscoff, France, 3 Department of Soil Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada, 4 Department of Life Sciences, Natural History Museum, London, United Kingdom, 5 Laboratory of Soil Biology, University of Neuchaˆtel, Neuchaˆtel, Switzerland, 6 Wadsworth Center, New York State Department of Health, Albany, New York, United States of America, 7 Department of Zoology, Charles University in Prague, Prague, Czech Republic, 8 Department of Ecology, University of Kaiserslautern, Kaiserslautern, Germany, 9 Institute of Botany and Landscape Ecology, University of Greifswald, -
A Large 28S Rdna-Based Phylogeny Confirms the Limitations Of
A peer-reviewed open-access journal ZooKeysA 500: large 25–59 28S (2015) rDNA-based phylogeny confirms the limitations of established morphological... 25 doi: 10.3897/zookeys.500.9360 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research A large 28S rDNA-based phylogeny confirms the limitations of established morphological characters for classification of proteocephalidean tapeworms (Platyhelminthes, Cestoda) Alain de Chambrier1, Andrea Waeschenbach2, Makda Fisseha1, Tomáš Scholz3, Jean Mariaux1,4 1 Natural History Museum of Geneva, CP 6434, CH - 1211 Geneva 6, Switzerland 2 Natural History Museum, Life Sciences, Cromwell Road, London SW7 5BD, UK 3 Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, Czech Republic 4 Department of Genetics and Evolution, University of Geneva, CH - 1205 Geneva, Switzerland Corresponding author: Jean Mariaux ([email protected]) Academic editor: B. Georgiev | Received 8 February 2015 | Accepted 23 March 2015 | Published 27 April 2015 http://zoobank.org/DC56D24D-23A1-478F-AED2-2EC77DD21E79 Citation: de Chambrier A, Waeschenbach A, Fisseha M, Scholz T and Mariaux J (2015) A large 28S rDNA-based phylogeny confirms the limitations of established morphological characters for classification of proteocephalidean tapeworms (Platyhelminthes, Cestoda). ZooKeys 500: 25–59. doi: 10.3897/zookeys.500.9360 Abstract Proteocephalidean tapeworms form a diverse group of parasites currently known from 315 valid species. Most of the diversity of adult proteocephalideans can be found in freshwater fishes (predominantly cat- fishes), a large proportion infects reptiles, but only a few infect amphibians, and a single species has been found to parasitize possums. Although they have a cosmopolitan distribution, a large proportion of taxa are exclusively found in South America. -
Report on the Status of Mediterranean Chondrichthyan Species
United Nations Environment Programme Mediterranean Action Plan Regional Activity Centre For Specially Protected Areas REPORT ON THE STATUS OF MEDITERRANEAN CHONDRICHTHYAN SPECIES D. CEBRIAN © L. MASTRAGOSTINO © R. DUPUY DE LA GRANDRIVE © Note : The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of UNEP concerning the legal status of any State, Territory, city or area, or of its authorities, or concerning the delimitation of their frontiers or boundaries. © 2007 United Nations Environment Programme Mediterranean Action Plan Regional Activity Centre for Specially Protected Areas (RAC/SPA) Boulevard du leader Yasser Arafat B.P.337 –1080 Tunis CEDEX E-mail : [email protected] Citation: UNEP-MAP RAC/SPA, 2007. Report on the status of Mediterranean chondrichthyan species. By Melendez, M.J. & D. Macias, IEO. Ed. RAC/SPA, Tunis. 241pp The original version (English) of this document has been prepared for the Regional Activity Centre for Specially Protected Areas (RAC/SPA) by : Mª José Melendez (Degree in Marine Sciences) & A. David Macías (PhD. in Biological Sciences). IEO. (Instituto Español de Oceanografía). Sede Central Spanish Ministry of Education and Science Avda. de Brasil, 31 Madrid Spain [email protected] 2 INDEX 1. INTRODUCTION 3 2. CONSERVATION AND PROTECTION 3 3. HUMAN IMPACTS ON SHARKS 8 3.1 Over-fishing 8 3.2 Shark Finning 8 3.3 By-catch 8 3.4 Pollution 8 3.5 Habitat Loss and Degradation 9 4. CONSERVATION PRIORITIES FOR MEDITERRANEAN SHARKS 9 REFERENCES 10 ANNEX I. LIST OF CHONDRICHTHYAN OF THE MEDITERRANEAN SEA 11 1 1. -
Gloiosiphoniaceae, Rhodophyta) 1
Pacific Science (1984), vol. 38, no. 4 © 1985 by the University of Hawaii Press. All rights reserved Peleophycus multiprocarpium gen. et sp. nov. (Gloiosiphoniaceae, Rhodophyta) 1 ISABELLA A. ABBorr2 ABSTRACT: Peleophycus multiprocarpium is described as a genus and species new to the red algal family Gloiosiphoniaceae (Cryptonemiales), in which a given supporting cell may bear one or more carpogonial branches and one to several auxiliary cell branches. Though several gonimoblasts could thus be formed on the same supporting cell, this condition has not been observed. Nonetheless it suggests a possible phylogeneticpathway from less complicated to more complex relationships of reproductive branches. In its structure of reproductive organs, Peleophycus seems most closely related to Gloeophycus, described from Korea and northwestern Japan. Peleophycus is one of several new genera and species that occurred in an unexpected subtidal (ca. 10-12 m depth) spring marine flora in the subtropics off Hawaii. THOUGH THE DETAILS OF postfertilization ev filament. This filament is in addition to an ents in many Florideophyceae are essentially already established pattern of vegetative in the same state ofknowledge as described by branching. This is the meaning of " auxiliary Kylin (1956), information on others, parti cell in an accessory or specialized filament" cularly members of the Ceramiales (Wollas (translated from Kylin 1930, 1956). In the ton 1968, Gordon 1972) and the austral Gig Kallymeniaceae (Norris 1957), a nearly com artinales (Kraft 1975, 1977a,-1977b, 1978), has .plete evolutionary series is exhibited by vari added dimension to our knowledge as well as ous species: from auxiliary cells and carpo substantiated the major lines of the classifi gonial branches on different and separated cation of Kylin (1956). -
AQUACULTURE in the ENSENADA REGION of NORTHERN BAJA CALIFORNIA, MEXICO José A
University of Connecticut OpenCommons@UConn Department of Ecology & Evolutionary Biology - Publications Stamford 4-1-2008 MARINE SCIENCE ASSESSMENT OF CAPTURE-BASED TUNA (Thunnus orientalis) AQUACULTURE IN THE ENSENADA REGION OF NORTHERN BAJA CALIFORNIA, MEXICO José A. Zertuche-González Universidad Autonoma de Baja California Ensenada Oscar Sosa-Nishizaki Centro de Investigacion Cientifica y de Educacion Superior de Ensenada (CICESE) Juan G. Vaca Rodriguez Universidad Autonoma de Baja California Ensenada Raul del Moral Simanek Consejo Nacional de Ciencia y Tecnologia (CONACyT) Ensenada Charles Yarish University of Connecticut, [email protected] Recommended Citation Zertuche-González, José A.; Sosa-Nishizaki, Oscar; Vaca Rodriguez, Juan G.; del Moral Simanek, Raul; Yarish, Charles; and Costa- Pierce, Barry A., "MARINE SCIENCE ASSESSMENT OF CAPTURE-BASED TUNA (Thunnus orientalis) AQUACULTURE IN THE ENSENADA REGION OF NORTHERN BAJA CALIFORNIA, MEXICO" (2008). Publications. 1. https://opencommons.uconn.edu/ecostam_pubs/1 See next page for additional authors Follow this and additional works at: https://opencommons.uconn.edu/ecostam_pubs Part of the Marine Biology Commons Authors José A. Zertuche-González, Oscar Sosa-Nishizaki, Juan G. Vaca Rodriguez, Raul del Moral Simanek, Charles Yarish, and Barry A. Costa-Pierce This report is available at OpenCommons@UConn: https://opencommons.uconn.edu/ecostam_pubs/1 1 MARINE SCIENCE ASSESSMENT OF CAPTURE-BASED TUNA (Thunnus orientalis) AQUACULTURE IN THE ENSENADA REGION OF NORTHERN BAJA CALIFORNIA, -
From Sea to Sea: Canada's Three Oceans of Biodiversity
Review From Sea to Sea: Canada’s Three Oceans of Biodiversity Philippe Archambault1*, Paul V. R. Snelgrove2, Jonathan A. D. Fisher3, Jean-Marc Gagnon4, David J. Garbary5, Michel Harvey6, Ellen L. Kenchington7,Ve´ronique Lesage6,Me´lanie Levesque1, Connie Lovejoy8, David L. Mackas9, Christopher W. McKindsey6, John R. Nelson9, Pierre Pepin10, Laurence Piche´ 1, Michel Poulin4 1 Institut des sciences de la mer de Rimouski, Universite´ du Que´bec a` Rimouski, Rimouski, Province de Quebec, Canada, 2 Ocean Sciences Centre/Biology Department, Memorial University of Newfoundland, St. John’s, Newfoundland, Canada, 3 Department of Biology, Queen’s University, Kingston, Ontario, Canada, 4 Research Division, Canadian Museum of Nature, Ottawa, Ontario, Canada, 5 Department of Biology, St. Francis Xavier University, Antigonish, Nova Scotia, Canada, 6 Fisheries and Oceans Canada, Maurice Lamontagne Institute, Mont Joli, Quebec, Canada, 7 Fisheries and Oceans Canada, Bedford Institute of Oceanography, Dartmouth, Nova Scotia, Canada, 8 De´partement de Biologie, Que´bec-Oce´an and Institut de biologie inte´grative et des syste´mes (IBIS), Universite´ Laval, Que´bec, Canada, 9 Fisheries and Oceans Canada, Institute of Ocean Sciences, Sidney, British Columbia, Canada, 10 Northwest Atlantic Fisheries Centre, St John’s, Newfoundland, Canada Evaluating and understanding biodiversity in marine ecosystems are positive or negative [1,2,3] as judged by trends in the number are both necessary and challenging for conservation. This paper of species and by potential future impacts. compiles and summarizes current knowledge of the diversity of Canada is at a major crossroads in its commitment to the marine taxa in Canada’s three oceans while recognizing that this conservation of living marine resources. -
Defence on Surface of Rhodophyta Halymenia Floresii
THESE DE DOCTORAT DE UNIVERSITE BRETAGNE SUD ECOLE DOCTORALE N° 598 Sciences de la Mer et du littoral Spécialité : Biotechnologie Marine Par Shareen A ABDUL MALIK Defence on surface of Rhodophyta Halymenia floresii: metabolomic fingerprint and interactions with the surface-associated bacteria Thèse présentée et soutenue à « Vannes », le « 7 July 2020 » Unité de recherche : Laboratoire de Biotechnologie et Chimie Marines Thèse N°: Rapporteurs avant soutenance : Composition du Jury : Prof. Gérald Culioli Associate Professor Président : Université de Toulon (La Garde) Prof. Claire Gachon Professor Dr. Leila Tirichine Research Director (CNRS) Museum National d’Histoire Naturelle, Paris Université de Nantes Examinateur(s) : Prof. Gwenaëlle Le Blay Professor Université Bretagne Occidentale (UBO), Brest Dir. de thèse : Prof. Nathalie Bourgougnon Professor Université Bretagne Sud (UBS), Vannes Co-dir. de thèse : Dr. Daniel Robledo Director CINVESTAV, Mexico i Invité(s) Dr. Gilles Bedoux Maître de conferences Université Bretagne Sud (UBS), Vannes Title: Systèmes de défence de surface de la Rhodophycée Halymenia floresii : Analyse metabolomique et interactions avec les bactéries épiphytes Mots clés: Halymenia floresii, antibiofilm, antifouling, métabolomique, bactéries associées à la surface, quorum sensing, molecules de défense Abstract : Halymenia floresii, une Rhodophycée présente Vibrio owensii, ainsi que son signal C4-HSL QS, a été une surface remarquablement exempte d'épiphytes dans les identifié comme pathogène opportuniste induisant un conditions de l'Aquaculture MultiTrophique Intégrée (AMTI). blanchiment. Les métabolites extraits de la surface et Ce phénomène la présence en surface de composés actifs de cellules entières de H. floresii ont été analysés par allélopathiques. L'objectif de ce travail a été d'explorer les LC-MS. -
Ontogenesis and Phylogenetic Interrelationships of Parasitic Flatworms
W&M ScholarWorks Reports 1981 Ontogenesis and phylogenetic interrelationships of parasitic flatworms Boris E. Bychowsky Follow this and additional works at: https://scholarworks.wm.edu/reports Part of the Aquaculture and Fisheries Commons, Marine Biology Commons, Oceanography Commons, Parasitology Commons, and the Zoology Commons Recommended Citation Bychowsky, B. E. (1981) Ontogenesis and phylogenetic interrelationships of parasitic flatworms. Translation series (Virginia Institute of Marine Science) ; no. 26. Virginia Institute of Marine Science, William & Mary. https://scholarworks.wm.edu/reports/32 This Report is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in Reports by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. /J,J:>' :;_~fo c. :-),, ONTOGENESIS AND PHYLOGENETIC INTERRELATIONSHIPS OF PARASITIC FLATWORMS by Boris E. Bychowsky Izvestiz Akademia Nauk S.S.S.R., Ser. Biol. IV: 1353-1383 (1937) Edited by John E. Simmons Department of Zoology University of California at Berkeley Berkeley, California Translated by Maria A. Kassatkin and Serge Kassatkin Department of Slavic Languages and Literature University of California at Berkeley Berkeley, California Translation Series No. 26 VIRGINIA INSTITUTE OF MARINE SCIENCE COLLEGE OF WILLIAM AND MARY Gloucester Point, Virginia 23062 William J. Hargis, Jr. Director 1981 Preface This publication of Professor Bychowsky is a major contribution to the study of the phylogeny of parasitic flatworms. It is a singular coincidence for it t6 have appeared in print the same year as Stunkardts nThe Physiology, Life Cycles and Phylogeny of the Parasitic Flatwormsn (Amer. Museum Novitates, No. 908, 27 pp., 1937 ), and this editor well remembers perusing the latter under the rather demanding tutelage of A.C. -
In Narcine Entemedor Jordan & Starks, 1895
A peer-reviewed open-access journal ZooKeys 852: 1–21Two (2019) new species of Acanthobothrium in Narcine entemedor from Mexico 1 doi: 10.3897/zookeys.852.28964 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Two new species of Acanthobothrium Blanchard, 1848 (Onchobothriidae) in Narcine entemedor Jordan & Starks, 1895 (Narcinidae) from Acapulco, Guerrero, Mexico Francisco Zaragoza-Tapia1, Griselda Pulido-Flores1, Juan Violante-González2, Scott Monks1 1 Universidad Autónoma del Estado de Hidalgo, Centro de Investigaciones Biológicas, Apartado Postal 1-10, C.P. 42001, Pachuca, Hidalgo, México 2 Universidad Autónoma de Guerrero, Unidad Académica de Ecología Marina, Gran Vía Tropical No. 20, Fraccionamiento Las Playas, C.P. 39390, Acapulco, Guerrero, México Corresponding author: Scott Monks ([email protected]) Academic editor: B. Georgiev | Received 14 August 2018 | Accepted 25 April 2019 | Published 5 June 2019 http://zoobank.org/0CAC34BD-1C75-415F-973D-C37E4557D06F Citation: Zaragoza-Tapia F, Pulido-Flores G, Violante-González J, Monks S (2019) Two new species of Acanthobothrium Blanchard, 1848 (Onchobothriidae) in Narcine entemedor Jordan & Starks, 1895 (Narcinidae) from Acapulco, Guerrero, Mexico. ZooKeys 852: 1–21. https://doi.org/10.3897/zookeys.852.28964 Abstract Two species of Acanthobothrium (Onchoproteocephalidea: Onchobothriidae) are described from the spiral intestine of Narcine entemedor Jordan & Starks, 1895, in Bahía de Acapulco, Acapulco, Guerrero, Mexico. Based on the four criteria used for the identification of species of Acanthobothrium, A. soniae sp. nov. is a Category 2 species (less than 15 mm in total length with less than 50 proglottids, less than 80 testes, and with the ovary asymmetrical in shape). -
A Review of Longnose Skates Zearaja Chilensisand Dipturus Trachyderma (Rajiformes: Rajidae)
Univ. Sci. 2015, Vol. 20 (3): 321-359 doi: 10.11144/Javeriana.SC20-3.arol Freely available on line REVIEW ARTICLE A review of longnose skates Zearaja chilensis and Dipturus trachyderma (Rajiformes: Rajidae) Carolina Vargas-Caro1 , Carlos Bustamante1, Julio Lamilla2 , Michael B. Bennett1 Abstract Longnose skates may have a high intrinsic vulnerability among fishes due to their large body size, slow growth rates and relatively low fecundity, and their exploitation as fisheries target-species places their populations under considerable pressure. These skates are found circumglobally in subtropical and temperate coastal waters. Although longnose skates have been recorded for over 150 years in South America, the ability to assess the status of these species is still compromised by critical knowledge gaps. Based on a review of 185 publications, a comparative synthesis of the biology and ecology was conducted on two commercially important elasmobranchs in South American waters, the yellownose skate Zearaja chilensis and the roughskin skate Dipturus trachyderma; in order to examine and compare their taxonomy, distribution, fisheries, feeding habitats, reproduction, growth and longevity. There has been a marked increase in the number of published studies for both species since 2000, and especially after 2005, although some research topics remain poorly understood. Considering the external morphological similarities of longnose skates, especially when juvenile, and the potential niche overlap in both, depth and latitude it is recommended that reproductive seasonality, connectivity and population structure be assessed to ensure their long-term sustainability. Keywords: conservation biology; fishery; roughskin skate; South America; yellownose skate Introduction Edited by Juan Carlos Salcedo-Reyes & Andrés Felipe Navia Global threats to sharks, skates and rays have been 1. -
Seaweed and Seagrasses Inventory of Laguna De San Ignacio, BCS
UNIVERSIDAD AUTÓNOMA DE BAJA CALIFORNIA SUR ÁREA DE CONOCIMIENTO DE CIENCIAS DEL MAR DEPARTAMENTO ACADÉMICO DE BIOLOGÍA MARINA PROGRAMA DE INVESTIGACIÓN EN BOTÁNICA MARINA Seaweed and seagrasses inventory of Laguna de San Ignacio, BCS. Dr. Rafael Riosmena-Rodríguez y Dr. Juan Manuel López Vivas Programa de Investigación en Botánica Marina, Departamento de Biología Marina, Universidad Autónoma de Baja California Sur, Apartado postal 19-B, km. 5.5 carretera al Sur, La Paz B.C.S. 23080 México. Tel. 52-612-1238800 ext. 4140; Fax. 52-612-12800880; Email: [email protected]. Participants: Dr. Jorge Manuel López-Calderón, Dr. Carlos Sánchez Ortiz, Dr. Gerardo González Barba, Dr. Sung Min Boo, Dra. Kyung Min Lee, Hidrobiol. Carmen Mendez Trejo, M. en C. Nestor Manuel Ruíz Robinson, Pas Biol. Mar. Tania Cota. Periodo de reporte: Marzo del 2013 a Junio del 2014. Abstract: The present report presents the surveys of marine flora 2013 – 2014 in the San Ignacio Lagoon of the, representing the 50% of planned visits and in where we were able to identifying 19 species of macroalgae to the area plus 2 Seagrass traditionally cited. The analysis of the number of species / distribution of macroalgae and seagrass is in progress using an intense review of literature who will be concluded using the last field trip information in May-June 2014. During the last two years we have not been able to find large abundances of species of microalgae as were described since 2006 and the floristic lists developed in the 90's. This added with the presence to increase both coverage and biomass of invasive species which makes a real threat to consider. -
Seaweeds of California Green Algae
PDF version Remove references Seaweeds of California (draft: Sun Nov 24 15:32:39 2019) This page provides current names for California seaweed species, including those whose names have changed since the publication of Marine Algae of California (Abbott & Hollenberg 1976). Both former names (1976) and current names are provided. This list is organized by group (green, brown, red algae); within each group are genera and species in alphabetical order. California seaweeds discovered or described since 1976 are indicated by an asterisk. This is a draft of an on-going project. If you have questions or comments, please contact Kathy Ann Miller, University Herbarium, University of California at Berkeley. [email protected] Green Algae Blidingia minima (Nägeli ex Kützing) Kylin Blidingia minima var. vexata (Setchell & N.L. Gardner) J.N. Norris Former name: Blidingia minima var. subsalsa (Kjellman) R.F. Scagel Current name: Blidingia subsalsa (Kjellman) R.F. Scagel et al. Kornmann, P. & Sahling, P.H. 1978. Die Blidingia-Arten von Helgoland (Ulvales, Chlorophyta). Helgoländer Wissenschaftliche Meeresuntersuchungen 31: 391-413. Scagel, R.F., Gabrielson, P.W., Garbary, D.J., Golden, L., Hawkes, M.W., Lindstrom, S.C., Oliveira, J.C. & Widdowson, T.B. 1989. A synopsis of the benthic marine algae of British Columbia, southeast Alaska, Washington and Oregon. Phycological Contributions, University of British Columbia 3: vi + 532. Bolbocoleon piliferum Pringsheim Bryopsis corticulans Setchell Bryopsis hypnoides Lamouroux Former name: Bryopsis pennatula J. Agardh Current name: Bryopsis pennata var. minor J. Agardh Silva, P.C., Basson, P.W. & Moe, R.L. 1996. Catalogue of the benthic marine algae of the Indian Ocean.