Contingency and Determinism in the Evolution of Bird Song Sound Frequency Jakob I
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Or POLYMYODI): Oscines (Songbirds
Text extracted from Gill B.J.; Bell, B.D.; Chambers, G.K.; Medway, D.G.; Palma, R.L.; Scofield, R.P.; Tennyson, A.J.D.; Worthy, T.H. 2010. Checklist of the birds of New Zealand, Norfolk and Macquarie Islands, and the Ross Dependency, Antarctica. 4th edition. Wellington, Te Papa Press and Ornithological Society of New Zealand. Pages 275, 279, 301-302 & 305-306. Order PASSERIFORMES: Passerine (Perching) Birds See Christidis & Boles (2008) for a review of recent studies relevant to the higher-level systematics of the passerine birds. Suborder PASSERES (or POLYMYODI): Oscines (Songbirds) The arrangement of songbirds in the 1970 Checklist (Checklist Committee 1970) was based on the premise that the species endemic to the Australasian region were derived directly from Eurasian groups and belonged in Old World families (e.g. Gerygone and Petroica in Muscicapidae). The 1990 Checklist (Checklist Committee 1990) followed the Australian lead in allocating various native songbirds to their own Australasian families (e.g. Gerygone to Acanthizidae, and Petroica to Eopsaltriidae), but the sequence was still based largely on the old Peters-Mayr arrangement. Since the late 1980s, when the 1990 Checklist was finalised, evidence from molecular biology, especially DNA studies, has shown that most of the Australian and New Zealand endemic songbirds are the product of a major Australasian radiation parallel to the radiation of songbirds in Eurasia and elsewhere. Many superficial morphological and ecological similarities between Australasian and Eurasian songbirds are the result of convergent evolution. Sibley & Ahlquist (1985, 1990) and Sibley et al. (1988) recognised a division of the songbirds into two groups which were called Corvida and Passerida (Sibley & Ahlquist 1990). -
Birds Suborder PASSERES (Or POLYMYODI): Oscines
Text extracted from Gill B.J.; Bell, B.D.; Chambers, G.K.; Medway, D.G.; Palma, R.L.; Scofield, R.P.; Tennyson, A.J.D.; Worthy, T.H. 2010. Checklist of the birds of New Zealand, Norfolk and Macquarie Islands, and the Ross Dependency, Antarctica. 4th edition. Wellington, Te Papa Press and Ornithological Society of New Zealand. Pages 275, 279 & 301-305. Order PASSERIFORMES: Passerine (Perching) Birds See Christidis & Boles (2008) for a review of recent studies relevant to the higher-level systematics of the passerine birds. Suborder PASSERES (or POLYMYODI): Oscines (Songbirds) The arrangement of songbirds in the 1970 Checklist (Checklist Committee 1970) was based on the premise that the species endemic to the Australasian region were derived directly from Eurasian groups and belonged in Old World families (e.g. Gerygone and Petroica in Muscicapidae). The 1990 Checklist (Checklist Committee 1990) followed the Australian lead in allocating various native songbirds to their own Australasian families (e.g. Gerygone to Acanthizidae, and Petroica to Eopsaltriidae), but the sequence was still based largely on the old Peters-Mayr arrangement. Since the late 1980s, when the 1990 Checklist was finalised, evidence from molecular biology, especially DNA studies, has shown that most of the Australian and New Zealand endemic songbirds are the product of a major Australasian radiation parallel to the radiation of songbirds in Eurasia and elsewhere. Many superficial morphological and ecological similarities between Australasian and Eurasian songbirds are the result of convergent evolution. Sibley & Ahlquist (1985, 1990) and Sibley et al. (1988) recognised a division of the songbirds into two groups which were called Corvida and Passerida (Sibley & Ahlquist 1990). -
Putting Phylogeny Into the Analysis of Biological Traits: a Methodological Approach Thibaut Jombart, Sandrine Pavoine, Sébastien Devillard, Dominique Pontier
Putting phylogeny into the analysis of biological traits: A methodological approach Thibaut Jombart, Sandrine Pavoine, Sébastien Devillard, Dominique Pontier To cite this version: Thibaut Jombart, Sandrine Pavoine, Sébastien Devillard, Dominique Pontier. Putting phylogeny into the analysis of biological traits: A methodological approach. Journal of Theoretical Biology, Elsevier, 2010, 264 (3), pp.693. 10.1016/j.jtbi.2010.03.038. hal-00591239 HAL Id: hal-00591239 https://hal.archives-ouvertes.fr/hal-00591239 Submitted on 8 May 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Author’s Accepted Manuscript Putting phylogeny into the analysis of biological traits: A methodological approach Thibaut Jombart, Sandrine Pavoine, Sébastien Devillard, Dominique Pontier PII: S0022-5193(10)00173-6 DOI: doi:10.1016/j.jtbi.2010.03.038 Reference: YJTBI5939 www.elsevier.com/locate/yjtbi To appear in: Journal of Theoretical Biology Received date: 20 January 2010 Revised date: 25 March 2010 Accepted date: 25 March 2010 Cite this article as: Thibaut Jombart, Sandrine Pavoine, Sébastien Devillard and Dominique Pontier, Putting phylogeny into the analysis of biological traits: A methodological ap- proach, Journal of Theoretical Biology, doi:10.1016/j.jtbi.2010.03.038 This is a PDF file of an unedited manuscript that has been accepted for publication. -
Differential Evolutionary History in Visual and Olfactory Floral Cues of the Bee-Pollinated Genus Campanula (Campanulaceae)
plants Article Differential Evolutionary History in Visual and Olfactory Floral Cues of the Bee-Pollinated Genus Campanula (Campanulaceae) Paulo Milet-Pinheiro 1,*,† , Pablo Sandro Carvalho Santos 1, Samuel Prieto-Benítez 2,3, Manfred Ayasse 1 and Stefan Dötterl 4 1 Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Albert-Einstein Allee, 89081 Ulm, Germany; [email protected] (P.S.C.S.); [email protected] (M.A.) 2 Departamento de Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos-ESCET, C/Tulipán, s/n, Móstoles, 28933 Madrid, Spain; [email protected] 3 Ecotoxicology of Air Pollution Group, Environmental Department, CIEMAT, Avda. Complutense, 40, 28040 Madrid, Spain 4 Department of Biosciences, Paris-Lodron-University of Salzburg, Hellbrunnerstrasse 34, 5020 Salzburg, Austria; [email protected] * Correspondence: [email protected] † Present address: Universidade de Pernambuco, Campus Petrolina, Rodovia BR 203, KM 2, s/n, Petrolina 56328-900, Brazil. Abstract: Visual and olfactory floral signals play key roles in plant-pollinator interactions. In recent decades, studies investigating the evolution of either of these signals have increased considerably. However, there are large gaps in our understanding of whether or not these two cue modalities evolve in a concerted manner. Here, we characterized the visual (i.e., color) and olfactory (scent) floral cues in bee-pollinated Campanula species by spectrophotometric and chemical methods, respectively, with Citation: Milet-Pinheiro, P.; Santos, the aim of tracing their evolutionary paths. We found a species-specific pattern in color reflectance P.S.C.; Prieto-Benítez, S.; Ayasse, M.; and scent chemistry. -
Resolving Phylogenetic Relationships Within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications
GBE Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications Paweł Mackiewicz1,*, Adam Dawid Urantowka 2, Aleksandra Kroczak1,2, and Dorota Mackiewicz1 1Department of Bioinformatics and Genomics, Faculty of Biotechnology, University of Wrocław, Poland 2Department of Genetics, Wroclaw University of Environmental and Life Sciences, Poland *Corresponding author: E-mail: pamac@smorfland.uni.wroc.pl. Accepted: September 30, 2019 Abstract Mitochondrial genes are placed on one molecule, which implies that they should carry consistent phylogenetic information. Following this advantage, we present a well-supported phylogeny based on mitochondrial genomes from almost 300 representa- tives of Passeriformes, the most numerous and differentiated Aves order. The analyses resolved the phylogenetic position of para- phyletic Basal and Transitional Oscines. Passerida occurred divided into two groups, one containing Paroidea and Sylvioidea, whereas the other, Passeroidea and Muscicapoidea. Analyses of mitogenomes showed four types of rearrangements including a duplicated control region (CR) with adjacent genes. Mapping the presence and absence of duplications onto the phylogenetic tree revealed that the duplication was the ancestral state for passerines and was maintained in early diverged lineages. Next, the duplication could be lost and occurred independently at least four times according to the most parsimonious scenario. In some lineages, two CR copies have been inherited from an ancient duplication and highly diverged, whereas in others, the second copy became similar to the first one due to concerted evolution. The second CR copies accumulated over twice as many substitutions as the first ones. However, the second CRs were not completely eliminated and were retained for a long time, which suggests that both regions can fulfill an important role in mitogenomes. -
The Relationships of the Starlings (Sturnidae: Sturnini) and the Mockingbirds (Sturnidae: Mimini)
THE RELATIONSHIPS OF THE STARLINGS (STURNIDAE: STURNINI) AND THE MOCKINGBIRDS (STURNIDAE: MIMINI) CHARLESG. SIBLEYAND JON E. AHLQUIST Departmentof Biologyand PeabodyMuseum of Natural History,Yale University, New Haven, Connecticut 06511 USA ABSTRACT.--OldWorld starlingshave been thought to be related to crowsand their allies, to weaverbirds, or to New World troupials. New World mockingbirdsand thrashershave usually been placed near the thrushesand/or wrens. DNA-DNA hybridization data indi- cated that starlingsand mockingbirdsare more closelyrelated to each other than either is to any other living taxon. Some avian systematistsdoubted this conclusion.Therefore, a more extensiveDNA hybridizationstudy was conducted,and a successfulsearch was made for other evidence of the relationshipbetween starlingsand mockingbirds.The resultssup- port our original conclusionthat the two groupsdiverged from a commonancestor in the late Oligoceneor early Miocene, about 23-28 million yearsago, and that their relationship may be expressedin our passerineclassification, based on DNA comparisons,by placing them as sistertribes in the Family Sturnidae,Superfamily Turdoidea, Parvorder Muscicapae, Suborder Passeres.Their next nearest relatives are the members of the Turdidae, including the typical thrushes,erithacine chats,and muscicapineflycatchers. Received 15 March 1983, acceptedI November1983. STARLINGS are confined to the Old World, dine thrushesinclude Turdus,Catharus, Hylocich- mockingbirdsand thrashersto the New World. la, Zootheraand Myadestes.d) Cinclusis -
Discovery of a Relict Lineage and Monotypic Family of Passerine Birds
Discovery of a relict lineage and monotypic family of passerine birds Based on a comprehensive molecular dataset of passerines birds we identified a branch with a single species, the Spotted Wren-babbler Spelaeornis formosus. We suggest that this represents a relict lineage, which we propose should be placed in its own family, Elachuridae. The scientific name Elachura formosa should be used. We analysed of one of the most comprehensive datasets to date of the largest passerine bird clade, Passerida, which comprises c. 36% of the World’s c. 10,500 bird species. We identified 10 primary branches in the tree. One of these primary branches was made up of a single species, the Spotted Wren-Babbler Spelaeornis formosus, which is a small Wren-like bird that occurs in mountains from the eastern Himalayas to southeast China. This species apparently represents an old branch in the large passerine tree, without any close living relatives. There have surely been other relatives on this branch, which have gone extinct. The fact that it resembles wren-babblers and wrens in appearance is either due to pure chance or to convergent evolution, which may result in similar appearances in unrelated species that live in similar environments. We proposed the new family name Elachuridae for this single species. We also suggested that the scientific name Elachura formosa should be used, and the English name be changed to Elachura, to highlight its distinctness. Timaliidae (56) Pellorneidae (69) Leiothrichidae (133) Zosteropidae (128) Sylviidae (70) Pnoepygidae -
Based on Nuclear and Mitochondrial Sequence Data
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 29 (2003) 126–138 www.elsevier.com/locate/ympev Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data Per G.P. Ericsona,* and Ulf S. Johanssona,b a Department of Vertebrate Zoology and Molecular Systematics Laboratory, Swedish Museum of Natural History, Frescativagen 44, P.O. Box 50007, SE-10405 Stockholm, Sweden b Department of Zoology, University of Stockholm, SE-106 91 Stockholm, Sweden Received 18 September 2002; revised 23 January 2003 Abstract Passerida is a monophyletic group of oscine passerines that includes almost 3500 species (about 36%) of all bird species in the world. The current understanding of higher-level relationships within Passerida is based on DNA–DNA hybridizations [C.G. Sibley, J.E. Ahlquist, Phylogeny and Classification of Birds, 1990, Yale University Press, New Haven, CT]. Our results are based on analyses of 3130 aligned nucleotide sequence data obtained from 48 ingroup and 13 outgroup genera. Three nuclear genes were sequenced: c-myc (498–510 bp), RAG-1 (930 bp), and myoglobin (693–722 bp), as well one mitochondrial gene; cytochrome b (879 bp). The data were analysed by parsimony, maximum-likelihood, and Bayesian inference. The African rockfowl and rock- jumper are found to constitute the deepest branch within Passerida, but relationships among the other taxa are poorly resolved— only four major clades receive statistical support. One clade corresponds to Passeroidea of [C.G. Sibley, B.L. Monroe, Distribution and Taxonomy of Birds of the World, 1990, Yale University Press, New Haven, CT] and includes, e.g., flowerpeckers, sunbirds, accentors, weavers, estrilds, wagtails, finches, and sparrows. -
New Zealand Passerines Help Clarify the Diversification of Major Songbird Lineages During the Oligocene
GBE New Zealand Passerines Help Clarify the Diversification of Major Songbird Lineages during the Oligocene Gillian C. Gibb1,*,y, Ryan England2,4,y, Gerrit Hartig2,5, Patricia A. (Trish) McLenachan2, Briar L. Taylor Smith1, Bennet J. McComish2,6, Alan Cooper3, and David Penny2 1Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand 2Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand 3Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, University of Adelaide, South Australia, Australia 4Present address: Forensic Business Group, Institute of Environmental Science and Research (ESR Ltd.), Mt Albert Science Centre, Auckland, New Zealand 5Present address: Starlims Germany GmbH An Abbott Company, Witten, Germany 6Present address: School of Physical Sciences, University of Tasmania, Hobart, Australia *Corresponding author: E-mail: [email protected]. yThese authors contributed equally to this work. Accepted: October 7, 2015 Data deposition: This project has been deposited at GenBank under the accession numbers KC545397-KC545409, KT894672. Abstract Passerines are the largest avian order, and the 6,000 species comprise more than half of all extant bird species. This successful radiation probably had its origin in the Australasian region, but dating this origin has been difficult due to a scarce fossil record and poor biogeographic assumptions. Many of New Zealand’s endemic passerines fall within the deeper branches of the passerine radiation, and a well resolved phylogeny for the modern New Zealand element in the deeper branches of the oscine lineage will help us understand both oscine and passerine biogeography. To this end we present complete mitochondrial genomes representing all families of New Zealand passerines in a phylogenetic framework of over 100 passerine species. -
An Update of Wallacels Zoogeographic Regions of the World
REPORTS To examine the temporal profile of ChC produc- specification of a distinct, and probably the last, 3. G. A. Ascoli et al., Nat. Rev. Neurosci. 9, 557 (2008). tion and their correlation to laminar deployment, cohort in this lineage—the ChCs. 4. J. Szentágothai, M. A. Arbib, Neurosci. Res. Program Bull. 12, 305 (1974). we injected a single pulse of BrdU into pregnant A recent study demonstrated that progeni- CreER 5. P. Somogyi, Brain Res. 136, 345 (1977). Nkx2.1 ;Ai9 females at successive days be- tors below the ventral wall of the lateral ventricle 6. L. Sussel, O. Marin, S. Kimura, J. L. Rubenstein, tween E15 and P1 to label mitotic progenitors, (i.e., VGZ) of human infants give rise to a medial Development 126, 3359 (1999). each paired with a pulse of tamoxifen at E17 to migratory stream destined to the ventral mPFC 7. S. J. Butt et al., Neuron 59, 722 (2008). + 18 8. H. Taniguchi et al., Neuron 71, 995 (2011). label NKX2.1 cells (Fig. 3A). We first quanti- ( ). Despite species differences in the develop- 9. L. Madisen et al., Nat. Neurosci. 13, 133 (2010). fied the fraction of L2 ChCs (identified by mor- mental timing of corticogenesis, this study and 10. J. Szabadics et al., Science 311, 233 (2006). + phology) in mPFC that were also BrdU+. Although our findings raise the possibility that the NKX2.1 11. A. Woodruff, Q. Xu, S. A. Anderson, R. Yuste, Front. there was ChC production by E15, consistent progenitors in VGZ and their extended neurogenesis Neural Circuits 3, 15 (2009). -
The Division of the Major Songbird Radiation Into Passerida and 'Core
TheBlackwell Publishing Ltd division of the major songbird radiation into Passerida and ‘core Corvoidea’ (Aves: Passeriformes) — the species tree vs. gene trees MARTIN IRESTEDT & JAN I. OHLSON Submitted: 19 July 2007 Irestedt, M. & Ohlson, J. I. (2008). The division of the major songbird radiation into Passerida Accepted: 26 November 2007 and ‘core Corvoidea’ (Aves: Passeriformes) — the species tree vs. gene trees. — Zoologica doi:10.1111/j.1463-6409.2007.00321.x Scripta, 37, 305–313. The knowledge of evolutionary relationships among oscine songbirds has been largely improved in recent years by molecular phylogenetic studies. However, current knowledge is still largely based on sequence data from a limited number of loci. In this study, we re-evaluate relationships among basal lineages within the ‘core Corvoidea’ and Passerida radiations, by adding additional loci to previously published data. The trees obtained from the individual genes suggest incongruent topologies. Especially the positions of Callaeatidae (wattlebirds), Cnemophilidae (satinbirds) and Melanocharitidae (longbills and berrypeckers) vary among the trees, but RAG-1 is the only gene that unambiguously suggested a ‘core Corvoidea’ affinity for these taxa. Analyses of various combined data sets show that the phylogenetic positions for Callaeatidae, Cnemophilidae and Melanocharitidae largely depend on which genes that have been combined. As the RAG-1 gene has contributed to a majority of the phylogenetic information in previous studies, it has deeply influenced previous molecular affinities of these taxa. Based on the current data, we found a reasonable support for a Passerida affinity of Callaeatidae and Cnemophilidae, contrary to previous molecular studies. The position of Melanocharitidae is more unstable but a basal position among Passerida is congruent with a deletion observed in the glyceraldehyde-3-phosphodehydrogenase (GAPDH) loci. -
MORPHOLOGICAL and ECOLOGICAL EVOLUTION in OLD and NEW WORLD FLYCATCHERS a Dissertation Presented to the Faculty of the College O
MORPHOLOGICAL AND ECOLOGICAL EVOLUTION IN OLD AND NEW WORLD FLYCATCHERS A dissertation presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Doctor of Philosophy Clay E. Corbin August 2002 This dissertation entitled MORPHOLOGICAL AND ECOLOGICAL EVOLUTION IN OLD AND NEW WORLD FLYCATCHERS BY CLAY E. CORBIN has been approved for the Department of Biological Sciences and the College of Arts and Sciences by Donald B. Miles Associate Professor, Department of Biological Sciences Leslie A. Flemming Dean, College of Arts and Sciences CORBIN, C. E. Ph.D. August 2002. Biological Sciences. Morphological and Ecological Evolution in Old and New World Flycatchers (215pp.) Director of Dissertation: Donald B. Miles In both the Old and New Worlds, independent clades of sit-and-wait insectivorous birds have evolved. These independent radiations provide an excellent opportunity to test for convergent relationships between morphology and ecology at different ecological and phylogenetic levels. First, I test whether there is a significant adaptive relationship between ecology and morphology in North American and Southern African flycatcher communities. Second, using morphological traits and observations on foraging behavior, I test whether ecomorphological relationships are dependent upon locality. Third, using multivariate discrimination and cluster analysis on a morphological data set of five flycatcher clades, I address whether there is broad scale ecomorphological convergence among flycatcher clades and if morphology predicts a course measure of habitat preference. Finally, I test whether there is a common morphological axis of diversification and whether relative age of origin corresponds to the morphological variation exhibited by elaenia and tody-tyrant lineages.