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Fungal Planet Description Sheets: 716–784 By: P.W
Fungal Planet description sheets: 716–784 By: P.W. Crous, M.J. Wingfield, T.I. Burgess, G.E.St.J. Hardy, J. Gené, J. Guarro, I.G. Baseia, D. García, L.F.P. Gusmão, C.M. Souza-Motta, R. Thangavel, S. Adamčík, A. Barili, C.W. Barnes, J.D.P. Bezerra, J.J. Bordallo, J.F. Cano-Lira, R.J.V. de Oliveira, E. Ercole, V. Hubka, I. Iturrieta-González, A. Kubátová, M.P. Martín, P.-A. Moreau, A. Morte, M.E. Ordoñez, A. Rodríguez, A.M. Stchigel, A. Vizzini, J. Abdollahzadeh, V.P. Abreu, K. Adamčíková, G.M.R. Albuquerque, A.V. Alexandrova, E. Álvarez Duarte, C. Armstrong-Cho, S. Banniza, R.N. Barbosa, J.-M. Bellanger, J.L. Bezerra, T.S. Cabral, M. Caboň, E. Caicedo, T. Cantillo, A.J. Carnegie, L.T. Carmo, R.F. Castañeda-Ruiz, C.R. Clement, A. Čmoková, L.B. Conceição, R.H.S.F. Cruz, U. Damm, B.D.B. da Silva, G.A. da Silva, R.M.F. da Silva, A.L.C.M. de A. Santiago, L.F. de Oliveira, C.A.F. de Souza, F. Déniel, B. Dima, G. Dong, J. Edwards, C.R. Félix, J. Fournier, T.B. Gibertoni, K. Hosaka, T. Iturriaga, M. Jadan, J.-L. Jany, Ž. Jurjević, M. Kolařík, I. Kušan, M.F. Landell, T.R. Leite Cordeiro, D.X. Lima, M. Loizides, S. Luo, A.R. Machado, H. Madrid, O.M.C. Magalhães, P. Marinho, N. Matočec, A. Mešić, A.N. Miller, O.V. Morozova, R.P. Neves, K. Nonaka, A. Nováková, N.H. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
AR TICLE a New Family and Genus in Dothideales for Aureobasidium-Like
IMA FUNGUS · 8(2): 299–315 (2017) doi:10.5598/imafungus.2017.08.02.05 A new family and genus in Dothideales for Aureobasidium-like species ARTICLE isolated from house dust Zoë Humphries1, Keith A. Seifert1,2, Yuuri Hirooka3, and Cobus M. Visagie1,2,4 1Biodiversity (Mycology), Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, ON, Canada, K1A 0C6 2Department of Biology, University of Ottawa, 30 Marie-Curie, Ottawa, ON, Canada, K1N 6N5 3Department of Clinical Plant Science, Faculty of Bioscience, Hosei University, 3-7-2 Kajino-cho, Koganei, Tokyo, Japan 4Biosystematics Division, ARC-Plant Health and Protection, P/BagX134, Queenswood 0121, Pretoria, South Africa; corresponding author e-mail: [email protected] Abstract: An international survey of house dust collected from eleven countries using a modified dilution-to-extinction Key words: method yielded 7904 isolates. Of these, six strains morphologically resembled the asexual morphs of Aureobasidium 18S and Hormonema (sexual morphs ?Sydowia), but were phylogenetically distinct. A 28S rDNA phylogeny resolved 28S strains as a distinct clade in Dothideales with families Aureobasidiaceae and Dothideaceae their closest relatives. BenA Further analyses based on the ITS rDNA region, β-tubulin, 28S rDNA, and RNA polymerase II second largest subunit black yeast confirmed the distinct status of this clade and divided strains among two consistent subclades. As a result, we Dothidiomycetes introduce a new genus and two new species as Zalaria alba and Z. obscura, and a new family to accommodate them in ITS Dothideales. Zalaria is a black yeast-like fungus, grows restrictedly and produces conidiogenous cells with holoblastic RPB2 synchronous or percurrent conidiation. -
End-40-75 (Endode-Endope) Mohammed AL- Hamdany
الموسوعة العربية ﻷمراض النبات والفطريات Arabic Encyclopedia of Plant Pathology &Fungi إعداد الدكتور محمد عبد الخالق الحمداني Mohammed AL- Hamdany End-40-75 (Endode-Endope) Contents Codes Page No. Table of contents 1 Endod… Endodermophyton End-40 2 Endodesmia (Broomeola) End-41 4 Endodesmidium Canter 1949 End-42 5 Endodothella ( Phyllachora ) End-43 6 Endodothiora Petr., 1929. End-44 19 Endodromia ( Echinostelium) End-45 21 Endog Endogenospora R.F. Castañeda, O. Morillo & Minter, 2010. End-46 22 Endogenous Inoculum End-47 24 Endogloea (Phomopsis) End-48 25 Endogonaceae End-49 34 Endogonales End-50 35 Endogone Link, 1809. End-51 36 Endogonella (Claziella) End-52 39 Endogonomycetes End-53 41 Endogonopsidaceae End-54 41 Endogonopsis R. Heim, 1966. End-55 42 Endoh… Endohormidium ( Corynelia) End-56 43 Endohyalina Marbach, 2000. End-57 46 Endol… Endolepiotula Singer, 1963. End-58 49 Endolpidium (Olipdium ) End-59 52 Endom…. 1 Endomelanconiopsidaceae End-60 55 Endomelanconiopsis E.I. Rojas & Samuels,2008 End-61 56 Endomelanconium Petr., 1940. End-62 58 Endomeliola S. Hughes & Piroz.,. 1994. End-63 60 Endomyces Reess, Bot. 1870 End-64 62 Endomycetaceae End-65 64 Endomycetales End-66 66 Endomycodes Delitsch, 1943 End-67 67 Endomycopsella End-68 68 Endomycopsis (Saccharomycopsis) End-69 70 Endomycorrhizae End-70 73 Endon… Endonema ( Pascherinema) End-71 75 Endonevrum (Mycenastrum) End-72 77 Endopa-Endope Endoparasites End-73 79 Endoparasitic Nematodes End-74 80 Endoperplexa P. Roberts,1993 End-75 82 References 85 End-40. الجنس الكيسي المختلف عليهEndodermophyton أقرت قانونية إسم الجنس الكيسي Endodermophyton Castell., 1910 وأنواعه الثمانية بضمنها النوع اﻷصلي Endodermophyton castellanii (Perry) Castell. -
Revised Taxonomy of Phoma and Allied Genera
Revised taxonomy of Phoma and allied genera Johannes (Hans) de Gruyter Thesis committee Promoters Prof. dr. P.W. Crous Professor of Evolutionary Phytopathology, Wageningen University Prof. dr. ir. P.J.G.M. de Wit Professor of Phytopathology, Wageningen University Other members Dr. R.T.A. Cook, Consultant Plant Pathologist, York, UK Prof. dr. T.W.M. Kuyper, Wageningen University Dr. F.T. Bakker, Wageningen University Dr. ir. A.J. Termorshuizen, BLGG AgroXpertus, Wageningen This research was conducted under the auspices of the Research School Biodiversity Revised taxonomy of Phoma and allied genera Johannes (Hans) de Gruyter Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 12 November 2012 at 4 p.m. in the Aula. Johannes (Hans) de Gruyter Revised taxonomy of Phoma and allied genera, 181 pages. PhD thesis Wageningen University, Wageningen, NL (2012) With references, with summaries in English and Dutch ISBN 978-94-6173-388-7 Dedicated to Gerhard Boerema † CONTENTS Chapter 1 Introduction 9 Chapter 2 Molecular phylogeny of Phoma and allied anamorph 17 genera: towards a reclassification of thePhoma complex Chapter 3 Systematic reappraisal of species in Phoma section 37 Paraphoma, Pyrenochaeta and Pleurophoma Chapter 4 Redisposition of Phoma-like anamorphs in Pleosporales 61 Chapter 5 The development of a validated real-time (TaqMan) 127 PCR for detection of Stagonosporopsis andigena and S. crystalliniformis in infected leaves of tomato and potato Chapter 6 General discussion 145 Appendix References 154 Glossary 167 Summary 170 Samenvatting 173 Dankwoord 176 Curriculum vitae 178 Education statement 179 CHAPTER 1 Introduction 9 Chapter 1 Chapter 1. -
Fungal Endophytes from Arid Areas of Andalusia
www.nature.com/scientificreports OPEN Fungal endophytes from arid areas of Andalusia: high potential sources for antifungal and antitumoral Received: 2 January 2018 Accepted: 19 June 2018 agents Published: xx xx xxxx Victor González-Menéndez1, Gloria Crespo1, Nuria de Pedro1, Caridad Diaz1, Jesús Martín1, Rachel Serrano1, Thomas A. Mackenzie1, Carlos Justicia1, M. Reyes González-Tejero2, M. Casares2, Francisca Vicente1, Fernando Reyes 1, José R. Tormo1 & Olga Genilloud1 Native plant communities from arid areas present distinctive characteristics to survive in extreme conditions. The large number of poorly studied endemic plants represents a unique potential source for the discovery of novel fungal symbionts as well as host-specifc endophytes not yet described. The addition of adsorptive polymeric resins in fungal fermentations has been seen to promote the production of new secondary metabolites and is a tool used consistently to generate new compounds with potential biological activities. A total of 349 fungal strains isolated from 63 selected plant species from arid ecosystems located in the southeast of the Iberian Peninsula, were characterized morphologically as well as based on their ITS/28S ribosomal gene sequences. The fungal community isolated was distributed among 19 orders including Basidiomycetes and Ascomycetes, being Pleosporales the most abundant order. In total, 107 diferent genera were identifed being Neocamarosporium the genus most frequently isolated from these plants, followed by Preussia and Alternaria. Strains were grown in four diferent media in presence and absence of selected resins to promote chemical diversity generation of new secondary metabolites. Fermentation extracts were evaluated, looking for new antifungal activities against plant and human fungal pathogens, as well as, cytotoxic activities against the human liver cancer cell line HepG2. -
21St Century Guidebook to Fungi OUTLINE CLASSIFICATION of FUNGI
Outline Classification of Fungi: Page 1 21st Century Guidebook to Fungi OUTLINE CLASSIFICATION OF FUNGI Evolution and phylogeny Until the latter half of the 20th century fungi were classified in the Plant Kingdom (strictly speaking into the subkingdom Cryptogamia, Division Fungi, subdivision Eumycotina) and were separated into four classes: the Phycomycetes, Ascomycetes, Basidiomycetes, and Deuteromycetes (the latter also known as Fungi Imperfecti because they lacked a sexual cycle). These traditional groups of ‘fungi’ were largely defined by the morphology of their sexual organs, whether or not their hyphae had cross-walls (septa), and the ploidy (degree of repetition of the basic number of chromosomes) of nuclei in their vegetative mycelium. The slime moulds, all grouped in the subdivision Myxomycotina, were also included in Division Fungi. Around the middle of the 20th century the three major kingdoms of multicellular eukaryotes were finally recognised as being absolutely distinct; the crucial character difference being the mode of nutrition: animals (whether single cells or multicellular) engulf food; plants photosynthesise; and fungi excrete digestive enzymes and absorb externally-digested nutrients. Other differences can be added to these. For example: in their cell membranes animals use cholesterol, fungi use ergosterol; in their cell walls, plants use cellulose (a glucose polymer), fungi use chitin (a glucosamine polymer); recent genomic surveys show that plant genomes lack gene sequences that are crucial in animal development, and vice- versa, and fungal genomes have none of the sequences that are important in controlling multicellular development in animals or plants. This latter point implies that animals, plants and fungi separated at a unicellular grade of organisation. -
Outline of Ascomycota - 2007
ISSN 1403-1418 VOLUME 13 DECEMBER 31, 2007 Outline of Ascomycota - 2007 H. Thorsten Lumbsch and Sabine M. Huhndorf (eds.) The Field Museum, Department of Botany, Chicago, USA Abstract Lumbsch, H. T. and S.M. Huhndorf (ed.) 2007. Outline of Ascomycota – 2007. Myconet 13: 1 - 58. The present classification contains all accepted genera and higher taxa above the generic level in phylum Ascomycota. Introduction The present classification is based in part on earlier versions published in Systema Ascomycetum and Myconet (see http://www.fieldmuseum.org/myconet/) and reflects the numerous changes made in the Deep Hypha issue of Mycologia (Spatafora et al. 2006), in Hibbett et al. (2007) and those listed in Myconet Notes Nos. 4408-4750 (Lumbsch & Huhndorf 2007). It includes all accepted genera and higher taxa of Ascomycota. New synonymous generic names are included in the outline. In future outlines attempts will be made to incorporate all synonymous generic names (for a list of synonymous generic names, see Eriksson & Hawksworth 1998). A question mark (?) indicates that the position of the taxon is uncertain. Eriksson O.E. & Hawksworth D.L. 1998. Outline of the ascomycetes - 1998. - Systema Ascomycetum 16: 83-296. Hibbett, D.S., Binder, M., Bischoff, J.F., Blackwell, M., Cannon, P.F., Eriksson, O.E., Huhndorf, S., James, T., Kirk, P.M., Lucking, R., Lumbsch, H.T., Lutzoni, F., Matheny, P.B., McLaughlin, D.J., Powell, M.J., Redhead, S., Schoch, C.L., Spatafora, J.W., Stalpers, J.A., Vilgalys, R., Aime, M.C., Aptroot, A., Bauer, R., Begerow, D., -
Two New Dothideomycetous Endoconidial Genera from Declining Larch
471 Two new dothideomycetous endoconidial genera from declining larch A. Tsuneda, M.L. Davey, I. Tsuneda, and R.S. Currah Abstract: Two endoconidial, black meristematic fungi, Celosporium larixicolum gen. et sp. nov. (Dothideales) and Hispi- doconidioma alpina gen. et sp. nov. (Capnodiales) are described from black subicula on twigs of declining larch (Larix lyallii Parl) trees in Alberta, Canada. Conidioma morphology and phylogenetic analysis of LSU and ITS regions indicate that these taxa are both distinct from each other and from previously described endoconidial genera. Conidiomata of C. larixicolum consist of black cellular clumps (aggregated conidiogenous cells) that are either naked or enveloped by scant to dense mycelium that sometimes organizes into a cupulate peridium. Endoconidia are 1–3 celled, hyaline when re- leased but become pigmented as they age, and very variable in size and shape, e.g., globose, pear-shaped, osteoid, or dis- coid with an irregular flange. In H. alpina, colonies are three-layered, consisting of a central pseudoparenchymatous layer sandwiched between an upper and a basal hyphal layers, and conidiogenesis occurs in sporadic areas of the central layer. Endoconidia are unicellular, hyaline, and subglobose to ellipsoid. The strong phylogenetic affinities between these newly described taxa and slow-growing, melanized fungi isolated from rocks suggest individual black meristematic fungus line- ages may have broad habitat ranges. Key words: black yeasts, conidiogenesis, Dothideomycetes, Larix, LSU, ITS rDNA. Re´sume´ : Les auteurs de´crivent deux champignons noirs conidiens me´riste´matiques, les Celosporium larixicolum gen. et sp. nov. (Dothideales) et Hispidoconidioma alpina gen. et sp. nov. (Capnodiales) obtenus de subicules noirs venant sur des ramilles de me´le`zes de´pe´rissants (Larix lyallii Parl), en Alberta au Canada. -
Investigation of Yeasts and Yeast-Like Fungi Associated with Australian Wine Grapes Using Cultural and Molecular Methods by Ai Lin
UNS W >013910086 U N SW - 8 AUG 2008 LIBRARY Investigation of yeasts and yeast-like fungi associated with Australian wine grapes using cultural and molecular methods by Ai Lin Beh A thesis submitted as a fulfillment for the degree of Doctor of Philosophy University of New South Wales School of Chemical Sciences and Engineering Sydney, Australia 2007 PLEASE TYPE THE UNIVERSITY OF NEW SOUTH WALES Thesis/Dissertation Sheet Surname or Family name: Beh First name: Ai Lin Other name/s: Abbreviation for degree as given in the University calendar: PhD School: University of New South Wales Faculty: Faculty of Engineering School of Chemical Sciences and Title: Investigation of the yeasts and yeast-like Engineering fungi associated with Australian wine grapes (Food Science and Technology) using cultural and molecular methods Abstract 350 words maximiim: (PLEASE TYPE) This thesis presents a systematic investigation of yeasts associated with wine grapes cuJtivated in several Australian vineyards during the 2001-2003 vintages. Using a combination of cultural and molecular methods, yeast populations of red (Cabernet sauvignon, Merlot, Tyrian) and white (Sauvignon blanc. Semillen) grape varieties were examined throughout grape cultivation. The yeast-like ftingus, Aiireohasidiumpiillulans, was the most prevalent species found on grapes. Various species of Cryptococcus, Rhodolorula and Sporobohmyces were frequently isolated throughout grape maturation. Ripe grapes showed an increased incidence of Hameniaspora and Melschnikowia species for the 2001-2002 season, but not for the drought affected, 2002-2003 season. Atypical, hot and dry conditions may account for this difference in yeast flora and have limited comparisons of data to determine the influences of vineyard location, grape variety and pesticide applications on the yeast ecology. -
Comparative Morphology and Phylogenetic Placement of Two Microsclerotial Black Fungi from Sphagnum
Mycologia, 95(5), 2003, pp. 959±975. q 2003 by The Mycological Society of America, Lawrence, KS 66044-8897 Comparative morphology and phylogenetic placement of two microsclerotial black fungi from Sphagnum S. Hambleton1 Dothideomycetes, meristematic ascomycetes, Sclero- Eastern Cereal and Oilseed Research Centre, conidioma, ultrastructure Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada A. Tsuneda INTRODUCTION Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, and Northern Black, irregularly shaped microsclerotia were collect- Forestry Centre, Canadian Forest Service, Edmonton, ed on the leaves of Sphagnum fuscum (Schimp.) Alberta, T6H 3S5 Canada Klinggr growing in a southern boreal bog in Alberta, R. S. Currah Canada. While these structures appeared similar un- Department of Biological Sciences, University of der a dissecting microscope, once cultured they clear- Alberta, Edmonton, Alberta T6G 2E9, Canada ly represented two different fungi. One fungal spe- cies produced mycelial colonies with abundant black microsclerotia, many of which bore papillate conidi- Abstract: Capnobotryella renispora and Scleroconidi- ogenous cells that produced successive hyaline, ba- oma sphagnicola form black, irregularly shaped mi- cilliform, conidia, while the other formed black, cere- crosclerotia that are indistinguishable in gross mor- briform colonies devoid of blastic conidia. The for- phology on leaves of Sphagnum fuscum. In culture, mer fungus was named Scleroconidioma sphagnicola microsclerotia of these fungi were similar, in that ma- gen. nov. & sp. nov. (Tsuneda et al 2000, 2001b), and ture component cells possessed thick, highly mela- is a pathogen of Sp. fuscum (Tsuneda et al 2001a). nized cell walls, poorly de®ned organelles, large lipid The colony characteristics of the latter fungus were bodies and simple septa.