Species Report for the Modoc Sucker
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Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
PREHISTORIC FORAGING PATTERNS at CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA a Thesis Presented to the Faculty of the Department Of
PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA A Thesis Presented to the Faculty of the Department of Anthropology California State University, Sacramento Submitted in partial satisfaction of the requirements for the degree of MASTER OF ARTS in Anthropology by Justin Blake Cairns SUMMER 2016 © 2016 Justin Blake Cairns ALL RIGHTS RESERVED ii PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA A Thesis by Justin Blake Cairns Approved by: ________________________________, Committee Chair Mark E. Basgall, Ph.D. ________________________________, Second Reader Jacob L. Fisher, Ph.D. ____________________________ Date iii Student: Justin Blake Cairns I certify that this student has met the requirements for format contained in the University format manual, and that this thesis is suitable for shelving in the Library and credit is to be awarded for the thesis. __________________________________, Graduate Coordinator _______________ Jacob Fisher, Ph.D. Date Department of Anthropology iv Abstract of PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA by Justin Blake Cairns Subsistence studies conducted on regional archaeological deposits indicate that in the Sacramento Delta, as in the rest of the Central Valley, there is a decrease in foraging efficiency during the Late Period. A recently excavated site, CA-SAC-47, provides direct evidence of subsistence strategies in the form of faunal and plant remains. This faunal assemblage is compared to direct evidence of subsistence from Delta sites SAC-42, SAC-43, SAC-65, SAC-145, and SAC-329. The results and implications of this direct evidence are used to address site variability and resource selectivity. ___________________________________, Committee Chair Mark E. -
Fishes As a Template for Reticulate Evolution
University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 12-2016 Fishes as a Template for Reticulate Evolution: A Case Study Involving Catostomus in the Colorado River Basin of Western North America Max Russell Bangs University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/etd Part of the Evolution Commons, Molecular Biology Commons, and the Terrestrial and Aquatic Ecology Commons Recommended Citation Bangs, Max Russell, "Fishes as a Template for Reticulate Evolution: A Case Study Involving Catostomus in the Colorado River Basin of Western North America" (2016). Theses and Dissertations. 1847. http://scholarworks.uark.edu/etd/1847 This Dissertation is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. Fishes as a Template for Reticulate Evolution: A Case Study Involving Catostomus in the Colorado River Basin of Western North America A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology by Max Russell Bangs University of South Carolina Bachelor of Science in Biological Sciences, 2009 University of South Carolina Master of Science in Integrative Biology, 2011 December 2016 University of Arkansas This dissertation is approved for recommendation to the Graduate Council. _____________________________________ Dr. Michael E. Douglas Dissertation Director _____________________________________ ____________________________________ Dr. Marlis R. Douglas Dr. Andrew J. Alverson Dissertation Co-Director Committee Member _____________________________________ Dr. Thomas F. Turner Ex-Officio Member Abstract Hybridization is neither simplistic nor phylogenetically constrained, and post hoc introgression can have profound evolutionary effects. -
Lost River Sucker 5-Year Status Review
Lost River Sucker (Deltistes luxatus) 5-Year Review Summary and Evaluation U.S. Fish and Wildlife Service Klamath Falls Fish and Wildlife Office Klamath Falls, Oregon July 2007 5-YEAR REVIEW Lost River Sucker (Deltistes luxatus) TABLE OF CONTENTS 1.0 GENERAL INFORMATION.......................................................................................... 1 1.1. Reviewers............................................................................................................................ 1 1.2. Methodology used to complete the review....................................................................... 1 1.3. Background ........................................................................................................................ 1 2.0 REVIEW ANALYSIS....................................................................................................... 2 2.1. Application of the 1996 Distinct Populations Segment (DPS) policy ............................ 2 2.2. Biology and Habitat ........................................................................................................... 3 2.3. Recovery Criteria............................................................................................................. 12 2.4. Five-Factor Analysis ........................................................................................................ 15 2.5. Synthesis............................................................................................................................ 29 3.0 RESULTS ....................................................................................................................... -
State of California the Resources Agency DEPARTMENT of FISH and GAME
State of California The Resources Agency DEPARTMENT OF FISH AND GAME LIFE HISTORY, STATUS, AND MANAGEMENT OF THE MODOC SUCKER, CATOSTOMUS MICROPS (RUTTER) IN CALIFORNIA, WITH A RECOMMENDATION FOR ENDANGERED CLASSIFICATION by Terry J. Mills Inland Fisheries, Sacramento Inland Fisheries Endangered Species Program Special Publication 80-6 November 1980 LDA Endangered Species Program Special Publications are nonrefereed reports generally of two types: they may contain -information of sufficient importance to be preserved for future reference but which may not be currently appropriate for journal publications; or they may be reports which contain information of current significance that warrants early dissemination to biologists, managers, and administrators but which may later be submitted for formal scientific publica- tion. These reports can be cited in publications, but their manuscript status should be recognized. Subject matter reflects the broad array of research and management conducted in California on nongame species of reptiles, amphibians, and nonmarine fishes and invertebrates, with primary emphasis on endangered, threatened, and rare taxa. Inquiries concerning any particular report should be directed to the Inland Fisheries Branch, 1416 Ninth Street, Sacramento, California 95814. LIFE HISTORY, STATUS, AND MANAGEMENT OF THE MODOC SUCKER, CATOSTOMUS MICROPS (RUTTER) IN CALIFORNIA, 1/ WITH A RECOMMENDATION FOR ENDANGERED CLASSIFICATION— by 2/ Terry J. Mills ABSTRACT The Modoc sucker, Catostomus miorops, designated as rare by the California Fish and Game Commission, is in jeopardy of extinction through loss of habitat to agricultural activities and hybridization with the Sacramento sucker, C. occidentalin. Only an estimated 1,300 fish, found in Hulbert, Johnson, and Washington creeks, Modoc County, remain. -
Microsoft Outlook
Joey Steil From: Leslie Jordan <[email protected]> Sent: Tuesday, September 25, 2018 1:13 PM To: Angela Ruberto Subject: Potential Environmental Beneficial Users of Surface Water in Your GSA Attachments: Paso Basin - County of San Luis Obispo Groundwater Sustainabilit_detail.xls; Field_Descriptions.xlsx; Freshwater_Species_Data_Sources.xls; FW_Paper_PLOSONE.pdf; FW_Paper_PLOSONE_S1.pdf; FW_Paper_PLOSONE_S2.pdf; FW_Paper_PLOSONE_S3.pdf; FW_Paper_PLOSONE_S4.pdf CALIFORNIA WATER | GROUNDWATER To: GSAs We write to provide a starting point for addressing environmental beneficial users of surface water, as required under the Sustainable Groundwater Management Act (SGMA). SGMA seeks to achieve sustainability, which is defined as the absence of several undesirable results, including “depletions of interconnected surface water that have significant and unreasonable adverse impacts on beneficial users of surface water” (Water Code §10721). The Nature Conservancy (TNC) is a science-based, nonprofit organization with a mission to conserve the lands and waters on which all life depends. Like humans, plants and animals often rely on groundwater for survival, which is why TNC helped develop, and is now helping to implement, SGMA. Earlier this year, we launched the Groundwater Resource Hub, which is an online resource intended to help make it easier and cheaper to address environmental requirements under SGMA. As a first step in addressing when depletions might have an adverse impact, The Nature Conservancy recommends identifying the beneficial users of surface water, which include environmental users. This is a critical step, as it is impossible to define “significant and unreasonable adverse impacts” without knowing what is being impacted. To make this easy, we are providing this letter and the accompanying documents as the best available science on the freshwater species within the boundary of your groundwater sustainability agency (GSA). -
United States Department of the Interior
United States Department of the Interior FISH AND WILDLIFE SERVICE Oregon Fish and Wildlife Office 2600 SE 98th Avenue, Suite 100 Portland, Oregon 97266 Phone: (503) 231-6179 FAX: (503) 231-6195 Reply To: 8330.F0047(09) File Name: CREP BO 2009_final.doc TS Number: 09-314 TAILS: 13420-2009-F-0047 Doc Type: Final Don Howard, Acting State Executive Director U.S. Department of Agriculture Farm Service Agency, Oregon State Office 7620 SW Mohawk St. Tualatin, OR 97062-8121 Dear Mr. Howard, This letter transmits the U.S. Fish and Wildlife Service’s (Service) Biological and Conference Opinion (BO) and includes our written concurrence based on our review of the proposed Oregon Conservation Reserve Enhancement Program (CREP) to be administered by the Farm Service Agency (FSA) throughout the State of Oregon, and its effects on Federally-listed species in accordance with section 7 of the Endangered Species Act (Act) of 1973, as amended (16 U.S.C. 1531 et seq.). Your November 24, 2008 request for informal and formal consultation with the Service, and associated Program Biological Assessment for the Oregon Conservation Reserve Enhancement Program (BA), were received on November 24, 2008. We received your letter providing a 90-day extension on March 26, 2009 based on the scope and complexity of the program and the related species that are covered, which we appreciated. This Concurrence and BO covers a period of approximately 10 years, from the date of issuance through December 31, 2019. The BA also includes species that fall within the jurisdiction of the National Oceanic and Atmospheric Administration’s Fisheries Service (NOAA Fisheries Service). -
1 CWU Comparative Osteology Collection, List of Specimens
CWU Comparative Osteology Collection, List of Specimens List updated November 2019 0-CWU-Collection-List.docx Specimens collected primarily from North American mid-continent and coastal Alaska for zooarchaeological research and teaching purposes. Curated at the Zooarchaeology Laboratory, Department of Anthropology, Central Washington University, under the direction of Dr. Pat Lubinski, [email protected]. Facility is located in Dean Hall Room 222 at CWU’s campus in Ellensburg, Washington. Numbers on right margin provide a count of complete or near-complete specimens in the collection. Specimens on loan from other institutions are not listed. There may also be a listing of mount (commercially mounted articulated skeletons), part (partial skeletons), skull (skulls), or * (in freezer but not yet processed). Vertebrate specimens in taxonomic order, then invertebrates. Taxonomy follows the Integrated Taxonomic Information System online (www.itis.gov) as of June 2016 unless otherwise noted. VERTEBRATES: Phylum Chordata, Class Petromyzontida (lampreys) Order Petromyzontiformes Family Petromyzontidae: Pacific lamprey ............................................................. Entosphenus tridentatus.................................... 1 Phylum Chordata, Class Chondrichthyes (cartilaginous fishes) unidentified shark teeth ........................................................ ........................................................................... 3 Order Squaliformes Family Squalidae Spiny dogfish ........................................................ -
Phylogeny of Suckers (Teleostei: Cypriniformes: Catostomidae): Further Evidence of Relationships Provided by the Single-Copy Nuclear Gene IRBP2
Zootaxa 3586: 195–210 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:66B1A0F0-5912-4C52-A9EA-D7265024064B Phylogeny of suckers (Teleostei: Cypriniformes: Catostomidae): further evidence of relationships provided by the single-copy nuclear gene IRBP2 WEI-JEN CHEN1 & RICHARD L. MAYDEN2* 1Institute of Oceanography, National Taiwan University, No.1 Sec. 4 Roosevelt Rd. Taipei 10617, Taiwan. E-mail: [email protected] 2Department of Biology, 3507 Laclede Ave, Saint Louis University, St. Louis, Missouri, 63103 USA. E-mail: [email protected] *Corresponding author: R.L. Mayden Abstract The order Cypriniformes and family Catostomidae, the Holarctic suckers, have received considerable phylogenetic attention in recent years. These studies have provided contrasting phylogenies and classifications to historical, morphology-based phylogenetic and prephylogenetic hypotheses of relationships of species and the naturalness of hypothesized genera, tribes, and subfamilies. To date, nearly all molecular work on catostomids has been done using DNA sequence variation of mitochondrial genes. In this study, we add to our previous investigations to identify single-copy nuclear gene markers for diploid and polyploid cypriniforms, and to expand sequences of nuclear IRBP2 gene to 1,933 bp for 23 catostomid species. This effort expands our previous studies using only partial sequences of 849 bp. The extended gene fragment consists of nearly the complete gene across exon1 to exon 4 and is used in two analyses to infer phylogenetic relationships of the currently, or formerly, recognized genera, tribes, and subfamilies. One analysis includes 23 ingroup species for which the larger fragment of IRBP2 could be obtained; these taxa were also included in a second analysis of 67 samples of 52 species for the shorter fragment. -
21 - 195 100 2816 100 N-Taxa 10 - 5 - 10
AN ICTHYOARCHAEOLOGICAL STUDY OF DIETARY CHANGE IN THE CALIFORNIA DELTA, CONTRA COSTA COUNTY JASON I. MISZANIEC, JELMER W. EERKENS UNIVERSITY OF CALIFORNIA, DAVIS ERIC J. BARTELINK CALIFORNIA STATE UNIVERSITY, CHICO This paper presents the results from a diachronic study of fish remains from two neighboring archaeological mound sites in Contra Costa county, Hotchkiss Mound (CA-CCO-138; 850–450 cal BP) and Simone Mound (CA-CCO-139; 1200–950 cal BP). A previous study (Eerkens and Bartelink, in review) using stable isotope data from individual burials suggested dietary differences between these two sites. This study examines fish remains as a potential source of these dietary differences. Fish remains from shovel probes were identified and quantified. Results indicate that both assemblages are dominated by Sacramento perch (30% and 36%, respectively) and minnows (chub, hitch, pikeminnow; 65% and 57% respectively). Similarities in the ichthyofaunal assemblages suggest that the fish species consumed remained relatively consistent between the Middle and Late Periods, indicating that variation in human bone collagen stable isotope values was not likely driven by differences in the species of fish consumed. The Sacramento-San Joaquin Delta (or the California Delta) is an expansive inland river delta and estuary system. Although this region has rich biodiversity in mammals and birds, the Delta is especially known for its diverse and unique ichthyofaunal communities, which are composed of freshwater, anadromous, and euryhaline species. Although certain species are present year-round, others are seasonally available, during migration and/or spawning events. Prehistoric hunter gatherers, who occupied the Delta for millennia, took full advantage of the ichthyofaunal resources available to them, as is evident from rich fish collections from midden deposits and settlement locations. -
Fishes of North America Endangered, Threatened, Or of Special Concern: 1979
FISHES OF NORTH AMERICA ENDANGERED, THREATENED, OR OF SPECIAL CONCERN: 1979 James E. Deacon, Gail Kobetich, James D. Williams, Salvador Contreras and Other Members of the Endangered Species Committee of the American Fisheries Society The snail darter, Percina tanasi. Photo by David Etnier of the University of Tennessee. Members of the AFS Endangered Species Committees: Lee Barclay Richard A. Heckmann Alex E. Peden R. Dale Caldwell Clark Hubbs John S. Ramsey Glenn H. Clemmer Gail C. Kobetich Royal D. Suttkus Salvador Contreras James F. La Bounty Charles R. Terrell Walter R. Courtenay, Jr. H. E. McReynolds Phillip L. Wampler James E. Deacon Robert R. Miller Walter R. Whitworth Donald C. Guerre Peter B. Moyle James D. Williams Vincent Guillory Robert J. Naiman James E. Williams Stephen J. Nicola This special section is made possible by the generous financial support of the U.S. Fish and Wildlife Service. March - April 1979 29 FISHES OF NORTH AMERICA ENDANGERED, THREATENED, OR OF SPECIAL CONCERN: 1979 James E. Deacon, Gail Kobetich, James D. Williams, Salvador Contreras and Other Members of the Endangered Species Committee of the American Fisheries Society his list of freshwater fishes—Endangered, Threatened, ing in Monterrey, Nuevo Leon, Mexico, December 6-9, T Of Special Concern—of North America is the result of 1978, he presented his conclusions regarding the status of the three years of effort by the American Fisheries Society (AFS) northern Mexican fishes listed here. The information presented Endangered Species Committee. During 1976 the primary at that Congress will be published as the Memoria del Secundo concern was compiling a list, based on records available Con greso Nacional de Zoologia (Contreras 1978).