Hellenic Plant Protection Journal
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Reference Assembly and Annotation of the Pyrenophora Teres F. Teres Isolate 0-1
GENOME REPORT Reference Assembly and Annotation of the Pyrenophora teres f. teres Isolate 0-1 Nathan A. Wyatt,*,† Jonathan K. Richards,† Robert S. Brueggeman,*,† and Timothy L. Friesen*,†,‡,1 *Genomics and Bioinformatics Program and †Department of Plant Pathology, North Dakota State University, Fargo, North Dakota 58102 and ‡Cereal Crops Research Unit, Red River Valley Agricultural Research Center, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Fargo, North Dakota 58102 ORCID ID: 0000-0001-5634-2200 (T.L.F.) ABSTRACT Pyrenophora teres f. teres, the causal agent of net form net blotch (NFNB) of barley, is a KEYWORDS destructive pathogen in barley-growing regions throughout the world. Typical yield losses due to NFNB Pyrenophora range from 10 to 40%; however, complete loss has been observed on highly susceptible barley lines where teres f. teres environmental conditions favor the pathogen. Currently, genomic resources for this economically important genome pathogen are limited to a fragmented draft genome assembly and annotation, with limited RNA support of sequencing the P. teres f. teres isolate 0-1. This research presents an updated 0-1 reference assembly facilitated by RNAseq long-read sequencing and scaffolding with the assistance of genetic linkage maps. Additionally, genome PacBio annotation was mediated by RNAseq analysis using three infection time points and a pure culture sample, barley resulting in 11,541 high-confidence gene models. The 0-1 genome assembly and annotation presented genome report here now contains the majority of the repetitive content of the genome. Analysis of the 0-1 genome revealed classic characteristics of a “two-speed” genome, being compartmentalized into GC-equilibrated and AT-rich compartments. -
Analysis of the Emerging Situation of Resistance to Succinate Dehydrogenase Inhibitors in Pyrenophora Teres and Zymoseptoria Tritici in Europe
Universität Hohenheim Institut für Phytomedizin Fachgebiet Phytopathologie Prof. Dr. Ralf T. Vögele Analysis of the emerging situation of resistance to succinate dehydrogenase inhibitors in Pyrenophora teres and Zymoseptoria tritici in Europe Dissertation zur Erlangung des Grades eines Doktors der Agrarwissenschaften vorgelegt der Fakultät Agrarwissenschaften von Dipl. Agr. Biol. Alexandra Rehfus aus Leonberg 2018 Diese Arbeit wurde unterstützt und finanziert durch die BASF SE, Unternehmensbereich Pflanzenschutz, Forschung Fungizide, Limburgerhof. Die vorliegende Arbeit wurde am 15.05.2017 von der Fakultät Agrarwissenschaften der Universität Hohenheim als „Erlangung des Doktorgrades an der agrarwissenschaftlichen Fakultät der Universität Hohenheim in Stuttgart“ angenommen. Tag der mündlichen Prüfung: 14.11.2017 1. Dekan: Prof. Dr. R. T. Vögele Berichterstatter, 1. Prüfer: Prof. Dr. R. T. Vögele Mitberichterstatter, 2. Prüfer: Prof. Dr. O. Spring 3. Prüfer: Prof. Dr. Dr. C. P. W. Zebitz Leiter des Kolloquiums: Prof. Dr. J. Wünsche Table of contents III Table of contents Table of contents ................................................................................................. III Abbreviations ..................................................................................................... VII Figures ................................................................................................................. IX Tables ................................................................................................................. -
Pyrenophora Teres: Taxonomy, Morphology, Interaction with Barley, and Mode of Control Aurélie Backes, Gea Guerriero, Essaid Ait Barka, Cédric Jacquard
Pyrenophora teres: Taxonomy, Morphology, Interaction With Barley, and Mode of Control Aurélie Backes, Gea Guerriero, Essaid Ait Barka, Cédric Jacquard To cite this version: Aurélie Backes, Gea Guerriero, Essaid Ait Barka, Cédric Jacquard. Pyrenophora teres: Taxonomy, Morphology, Interaction With Barley, and Mode of Control. Frontiers in Plant Science, Frontiers, 2021, 12, 10.3389/fpls.2021.614951. hal-03279025 HAL Id: hal-03279025 https://hal.univ-reims.fr/hal-03279025 Submitted on 6 Jul 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License REVIEW published: 06 April 2021 doi: 10.3389/fpls.2021.614951 Pyrenophora teres: Taxonomy, Morphology, Interaction With Barley, and Mode of Control Aurélie Backes 1, Gea Guerriero 2, Essaid Ait Barka 1* and Cédric Jacquard 1* 1 Unité de Recherche Résistance Induite et Bioprotection des Plantes, Université de Reims Champagne-Ardenne, Reims, France, 2 Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), Hautcharage, Luxembourg Net blotch, induced by the ascomycete Pyrenophora teres, has become among the most important disease of barley (Hordeum vulgare L.). Easily recognizable by brown reticulated stripes on the sensitive barley leaves, net blotch reduces the yield by up to 40% and decreases seed quality. -
The Emergence of Cereal Fungal Diseases and the Incidence of Leaf Spot Diseases in Finland
AGRICULTURAL AND FOOD SCIENCE AGRICULTURAL AND FOOD SCIENCE Vol. 20 (2011): 62–73. Vol. 20(2011): 62–73. The emergence of cereal fungal diseases and the incidence of leaf spot diseases in Finland Marja Jalli, Pauliina Laitinen and Satu Latvala MTT Agrifood Research Finland, Plant Production Research, FI-31600 Jokioinen, Finland, email: [email protected] Fungal plant pathogens causing cereal diseases in Finland have been studied by a literature survey, and a field survey of cereal leaf spot diseases conducted in 2009. Fifty-seven cereal fungal diseases have been identified in Finland. The first available references on different cereal fungal pathogens were published in 1868 and the most recent reports are on the emergence of Ramularia collo-cygni and Fusarium langsethiae in 2001. The incidence of cereal leaf spot diseases has increased during the last 40 years. Based on the field survey done in 2009 in Finland, Pyrenophora teres was present in 86%, Cochliobolus sativus in 90% and Rhynchosporium secalis in 52% of the investigated barley fields.Mycosphaerella graminicola was identi- fied for the first time in Finnish spring wheat fields, being present in 6% of the studied fields.Stagonospora nodorum was present in 98% and Pyrenophora tritici-repentis in 94% of spring wheat fields. Oat fields had the fewest fungal diseases. Pyrenophora chaetomioides was present in 63% and Cochliobolus sativus in 25% of the oat fields studied. Key-words: Plant disease, leaf spot disease, emergence, cereal, barley, wheat, oat Introduction nbrock and McDonald 2009). Changes in cropping systems and in climate are likely to maintain the plant-pathogen interactions (Gregory et al. -
Historical Painting Techniques, Materials, and Studio Practice
Historical Painting Techniques, Materials, and Studio Practice PUBLICATIONS COORDINATION: Dinah Berland EDITING & PRODUCTION COORDINATION: Corinne Lightweaver EDITORIAL CONSULTATION: Jo Hill COVER DESIGN: Jackie Gallagher-Lange PRODUCTION & PRINTING: Allen Press, Inc., Lawrence, Kansas SYMPOSIUM ORGANIZERS: Erma Hermens, Art History Institute of the University of Leiden Marja Peek, Central Research Laboratory for Objects of Art and Science, Amsterdam © 1995 by The J. Paul Getty Trust All rights reserved Printed in the United States of America ISBN 0-89236-322-3 The Getty Conservation Institute is committed to the preservation of cultural heritage worldwide. The Institute seeks to advance scientiRc knowledge and professional practice and to raise public awareness of conservation. Through research, training, documentation, exchange of information, and ReId projects, the Institute addresses issues related to the conservation of museum objects and archival collections, archaeological monuments and sites, and historic bUildings and cities. The Institute is an operating program of the J. Paul Getty Trust. COVER ILLUSTRATION Gherardo Cibo, "Colchico," folio 17r of Herbarium, ca. 1570. Courtesy of the British Library. FRONTISPIECE Detail from Jan Baptiste Collaert, Color Olivi, 1566-1628. After Johannes Stradanus. Courtesy of the Rijksmuseum-Stichting, Amsterdam. Library of Congress Cataloguing-in-Publication Data Historical painting techniques, materials, and studio practice : preprints of a symposium [held at] University of Leiden, the Netherlands, 26-29 June 1995/ edited by Arie Wallert, Erma Hermens, and Marja Peek. p. cm. Includes bibliographical references. ISBN 0-89236-322-3 (pbk.) 1. Painting-Techniques-Congresses. 2. Artists' materials- -Congresses. 3. Polychromy-Congresses. I. Wallert, Arie, 1950- II. Hermens, Erma, 1958- . III. Peek, Marja, 1961- ND1500.H57 1995 751' .09-dc20 95-9805 CIP Second printing 1996 iv Contents vii Foreword viii Preface 1 Leslie A. -
May 29, 2012 Kermes Scale Kermes Scales Are Occasionally Found
Number 6 - May 29, 2012 Kermes Scale and some of the leaves die. Damage is noticed from the ground as scattered Kermes scales are occasionally found on branch tips appearing whitish and/or pin, white, bur, and other oaks in Illinois. brownish due to dead leaves and the leaf They are most common on or near the distortion revealing more leaf branch tips and appear gall-like, so they undersides. The scales feed at the base are commonly misidentified as galls. of petioles, on leaf veins, and at twig They also tend to feed in leaf axils, so crotches. The scale is rounded and about they are sometimes misidentified as one-eighth inch in diameter. Although buds. The taxonomy of kermes scale the scales are brownish, they frequently species is uncertain because early work appear blackish due to a coating of sooty relied heavily on color patterns, which mold. Sooty mold is a black fungus that we now know are variable. There are grows on the honeydew, the partially approximately 30 species of kermes that digested and concentrated plant sap occur in North America, but identification excreted by many scale insect species. is difficult. This goes beyond academic gymnastics, as different species produce Kermes scales have recently been seen crawlers at different times during the on bur oak in Illinois. These scales tend growing season. to be located on the twigs at or near leaf buds and at twig crotches near branch Control of scale insects relies on tips. They are rounded and up to one- insecticide application to the unprotected quarter inch in diameter. -
Statecraft and Insect Oeconomies in the Global French Enlightenment (1670-1815)
Statecraft and Insect Oeconomies in the Global French Enlightenment (1670-1815) Pierre-Etienne Stockland Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2018 © 2017 Etienne Stockland All rights reserved ABSTRACT Statecraft and Insect Oeconomies in the Global French Enlightenment (1670-1815) Pierre-Etienne Stockland Naturalists, state administrators and farmers in France and its colonies developed a myriad set of techniques over the course of the long eighteenth century to manage the circulation of useful and harmful insects. The development of normative protocols for classifying, depicting and observing insects provided a set of common tools and techniques for identifying and tracking useful and harmful insects across great distances. Administrative techniques for containing the movement of harmful insects such as quarantine, grain processing and fumigation developed at the intersection of science and statecraft, through the collaborative efforts of diplomats, state administrators, naturalists and chemical practitioners. The introduction of insectivorous animals into French colonies besieged by harmful insects was envisioned as strategy for restoring providential balance within environments suffering from human-induced disequilibria. Naturalists, administrators, and agricultural improvers also collaborated in projects to maximize the production of useful substances secreted by insects, namely silk, dyes and medicines. A study of -
Isolation and Characterization of the Mating-Type Locus of the Barley
855 Isolation and characterization of the mating-type locus of the barley pathogen Pyrenophora teres and frequencies of mating-type idiomorphs within and among fungal populations collected from barley landraces Domenico Rau, Frank J. Maier, Roberto Papa, Anthony H.D. Brown, Virgilio Balmas, Eva Saba, Wilhelm Schaefer, and Giovanna Attene Abstract: Pyrenophora teres f. sp. teres mating-type genes (MAT-1: 1190 bp; MAT-2: 1055 bp) have been identified. Their predicted proteins, measuring 379 and 333 amino acids, respectively, are similar to those of other Pleosporales, such as Pleospora sp., Cochliobolus sp., Alternaria alternata, Leptosphaeria maculans, and Phaeosphaeria nodorum. The structure of the MAT locus is discussed in comparison with those of other fungi. A mating-type PCR assay has also been developed; with this assay we have analyzed 150 isolates that were collected from 6 Sardinian barley land- race populations. Of these, 68 were P. t e re s f. sp. teres (net form; NF) and 82 were P. t e re s f. sp. maculata (spot form; SF). Within each mating type, the NF and SF amplification products were of the same length and were highly similar in sequence. The 2 mating types were present in both the NF and the SF populations at the field level, indicating that they have all maintained the potential for sexual reproduction. Despite the 2 forms being sympatric in 5 fields, no in- termediate isolates were detected with amplified fragment length polymorphism (AFLP) analysis. These results suggest that the 2 forms are genetically isolated under the field conditions. In all of the samples of P. -
Insects Visiting Drippy Blight Diseased Red Oak Trees Are Contaminated with the Pathogenic Bacterium Lonsdalea Quercina
Plant Disease • XXXX • XXX:X-X • https://doi.org/10.1094/PDIS-12-18-2248-RE Insects Visiting Drippy Blight Diseased Red Oak Trees Are Contaminated with the Pathogenic Bacterium Lonsdalea quercina Rachael A. Sitz,1,2,† Vincent M. Aquino,3 Ned A. Tisserat,1 Whitney S. Cranshaw,1 and Jane E. Stewart1 1 Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177 2 Current address: Rocky Mountain Research Station, United States Department of Agriculture Forest Service, Moscow, ID 83843 3 Facilities Management, University of Colorado – Boulder, Boulder, CO 80309 Abstract The focus of investigation in this study was to consider the potential of ar- represent only a subset of the insect orders that were observed feeding on thropods in the dissemination of the bacterium involved in drippy blight the bacterium or present on diseased trees yet were not able to be tested. disease, Lonsdalea quercina. Arthropod specimens were collected and The insects contaminated with L. quercina exhibited diverse life histories, tested for the presence of the bacterium with molecular markers. The bac- where some had a facultative relationship with the bacterium and others terium L. quercina was confirmed on 12 different insect samples from three sought it out as a food source. These findings demonstrate that a diverse orders (Coleoptera, Hemiptera, and Hymenoptera) and eight families set of insects naturally occur on diseased trees and may disseminate L. (Buprestidae, Coccinellidae, Dermestidae, Coreidae, Pentatomidae and/or quercina. Miridae, Apidae, Formicidae, and Vespidae). Approximately half of the in- sects found to carry the bacterium were in the order Hymenoptera. -
Epidemiology of Pyrenophora Teres and Its Effect On
EPIDEMIOLOGY OF PYRENOPHORA TERES AND ITS EFFECT ON GRAIN YIELD OF HORDEUM VULGARE A Thesis Submitted to the Faculty of Graduate Studies and Research in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in the Department of Crop Science and Plant Ecology University of Saskatchewan Saskatoon by Cornelius Gerardus Jacobus van den Berg July, 1 988 The author claims copyright. Use should not be made of the material contained herein without proper acknowledgement, as indicated on the following page. The author has agreed that the Library, University of Saskatchewan, may make this thesis freely available for inspection. Moreover, the author has agreed that permission for extensive copying of this thesis for scholarly purposes may be granted by the professor or professors who supervised the thesis work recorded herein or, in their absence, by the Head of the Department or the Dean of the College in which the thesis work was done. It is understood that due recognition will be given to the author of this thesis and to the University of Saskatchewan in any use of the material in this thesis. Copying or publication or any other use of the thesis for financial gain without approval by the University of Saskatchewan and the author's written permission is prohibited. Requests for permission to copy or to make any other use of material in this thesis in whole or in part should be addressed to: Head of the Department of Crop Science and Plant Ecology University of Saskatchewan Saskatoon, Saskatchewan Canada S7N OWO ABSTRACT Recent surveys in Saskatchewan have shown that the prevalence of Pyrenophora teres Drechs., the causal agent of net blotch of barley (Hordeum vulgare L.), has increased. -
Scale Insects /Hemiptera, Coccoidea/ As a Source of Natural Dye and Other Useful Substances
VOL. 15 APHIDS AND OTHER HEMIPTEROUS INSECTS 151±167 Scale insects /Hemiptera, Coccoidea/ as a source of natural dye and other useful substances BOZÇ ENA èAGOWSKA,KATARZYNA GOLAN Department of Entomology, University of Life Sciences KroÂla LeszczynÂskiego 7, 20-069 Lublin, Poland [email protected] [email protected] Abstract For centuries some scale insect species have been used for the production of dye (Porphyrophora polonica, P. hameli, Kermes vermilio, Kerria lacca), wax (Ceroplastes ceriferus, C. irregularis, Ericerus pela), lac and shellac (K. lacca); these hemipterons are also the source of honeydew. Nowadays, some of them (Dactylopius coccus) deliver natural pigment which is used for yoghurt, sweets and soft drinks production. Polish cochineal is considered to be a historical and well-earned species for Poland. During Jagiellonian times it constituted one of the more important factors in national economy contributing to the country's prosperity and the society's well-being. Also today it could be used in many sectors of the eco- nomy, e.g. in food production. One of the factors which makes it more difficult to use species of the Porphyrophora genus in mass production of carmine dye is a too little content of dyeing substance in the bodies of these insects and a too large content of fat (about 30% of body mass) which inhibits the process of fabrics dyeing. An additional, though not less important problem is a remar- kable disappearance of P. polonica and P. hameli which is related with the damage of their natural habitats. The phenomenon of scale insect disappea- rance and the need for its protection was noticed back in the eighteenth cen- tury. -
Global Entomologies: Insects, Empires, and the ‘Synthetic Age’ *
Downloaded from http://past.oxfordjournals.org/ at Amherst College Library, Serials Section on October 31, 2013 , new edn charts in the 1 The Last Loop of the * Billboard ThePastandPresentSociety,Oxford,2013 I Oriental Rugs Today: A Guide to the Best New ß lu and Oktay Aslanapa, d o ´ (Istanbul, 2006). On the different materials used in lmecid I (1839–61) founded the Hereke ¨ Ella Fitzgerald: A Biography of the First Lady of Jazz British Military Spectacle: From the Napoleonic Wars through the , 2nd edn (Berkeley, 2003), 80; for more on the Hereke Imperial IN WORLD HISTORY (2013) (Cambridge, Mass., 1996), 68. Stuart Nicholson, GLOBAL ENTOMOLOGIES: INSECTS, A trio of more incongruous events, spanning three centuries, * Thanks to Nina Gordon, Steven Gray, Hannah Greenwald, Ken Kopp, Tricia 1 EMPIRES, AND THE ‘SYNTHETIC AGE’ doi:10.1093/pastj/gtt026 In November 1944, Decca RecordsElla released Fitzgerald an and album The Ink featuring Spots.‘I’m The Making two Believe’ tracks and on ‘Into the Eachspent record, Life seventeen Some Rain weeks Must at Fall’, United the States top and oftween inaugurated the the ‘First a Lady long-termMilt of collaboration Song’ Gabler. and be- Ottoman the A Sultan fabled Abdu century record producer before this musical milestone, the (New York, 1995), 81. EmmettCarpets Eiland, from the East Carpet Manufacture, see Ayt¸eFazly Past and Present Lipton, Benjamin Madley, JerryPeterson, Melillo, Khary Lalise Polk, Melillo, Elizabeth Michaelearlier Pryor O’Connor, versions and of Dawn this Theodore article. Waddelow for their input on might seem difficult totonishing imagine, feature. They yet depended these on the episodes tremendous share productive an as- Imperial Carpet Manufacture tohis produce Palace elaborate Dolmabahc¸e on silk the rugs Seagant for of carpets, Marmara.