Serpentine Geoecology of Eastern North America: a Review
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Cryptic Species and Species Pairs in Lichens: a Discussion on the Relationship Between Molecular Phylogenies and Morphological Characters
cryptic species:07-Cryptic_species 10/12/2009 13:19 Página 71 Anales del Jardín Botánico de Madrid Vol. 66S1: 71-81, 2009 ISSN: 0211-1322 doi: 10.3989/ajbm.2225 Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters by Ana Crespo & Sergio Pérez-Ortega Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, E-28040 Madrid, Spain [email protected], [email protected] Abstract Resumen Crespo, A. & Pérez-Ortega, S. 2009. Cryptic species and species Crespo, A. & Pérez-Ortega, S. 2009. Especies crípticas y pares de pairs in lichens: A discussion on the relationship between mole- especies en líquenes: una discusión sobre la relación entre la fi- cular phylogenies and morphological characters. Anales Jard. logenia molecular y los caracteres morfológicos. Anales Jard. Bot. Madrid 66S1: 71-81. Bot. Madrid 66S1: 71-81 (en inglés). As with most disciplines in biology, molecular genetics has re- Como en otras disciplinas, el impacto producido por la filogenia volutionized our understanding of lichenized fungi. Nowhere molecular en el conocimiento de los hongos liquenizados ha has this been more true than in systematics, especially in the de- producido avances y cambios conceptuales importantes. Esto limitation of species. In many cases, molecular research has ve- ha sido especialmente cierto en la sistemática y ha afectado de rified long-standing hypotheses, but in others, results appear to una manera muy notable en aspectos -
WO 2016/061206 Al 21 April 2016 (21.04.2016) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2016/061206 Al 21 April 2016 (21.04.2016) P O P C T (51) International Patent Classification: (74) Agent: BAUER, Christopher; PIONEER HI-BRED IN C12N 15/82 (2006.01) A01N 65/00 (2009.01) TERNATIONAL, INC., 7100 N.W. 62nd Avenue, John C07K 14/415 (2006.01) ston, Iowa 5013 1-1014 (US). (21) International Application Number: (81) Designated States (unless otherwise indicated, for every PCT/US2015/055502 kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (22) Date: International Filing BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, 14 October 2015 (14.10.201 5) DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (25) Filing Language: English HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, (26) Publication Language: English MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, (30) Priority Data: PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, 62/064,810 16 October 20 14 ( 16.10.20 14) US SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (71) Applicants: PIONEER HI-BRED INTERNATIONAL, INC. [US/US]; 7100 N.W. -
Sendtnera 1: 273-280
. © Biodiversity Heritage Library, http://www.biodiversitylibrary.org/; www.biologiezentrum.at 273 Notes on the Genus Sagediopsis (Verrucariales, Adelococcaceae) by D. Triebel Abstract: Triebel, D.: Notes on the genus Sagediopsis (Verrucariales, Adelococcaceae). - Sendtnera 1: 273-280. ISSN 0944-0178. Notes on the genus Sagediopsis are given. Sagediopsis dissimilis Triebel is described as a new species and treated in detail. This lichenicolous fungus is confined to the lecideoid lichen Paraporpidia leptocarpa and occurs in Australasia. Sagediopsis is closely related to Adelococcus. Both genera are placed in a new family of the Verrucariales, Adelococcaceae Triebel. The family includes lichenicolous, non-lichenized taxa with persistent interascal filaments. 1. Introduction The order Verrucariales Mattick ex D. Hawksw. & 0. Eriksson includes until now only one family, the Verrucariaceae Zenker, which comprizes mainly lichenized ascortiycetes. It is characterized by globose, mainly clypeate and at least apically dark brown perithecioid ascomata. The hamathecial elements are confined to the ostiolar canal. The asci of the Vernicaria-type are broadly clavate, apically equally thick-walled and have constantly non- amyloid inner wall layers (see ERIKSSON 1981, Hawksworth & ERIKSSON 1986). The hymenial gel and the external ascus wall layer fi-equently turn red in Lugol's iodine solution. The majority of the c. 800 known Verrucarialean taxa develops two-biont lichen associations. Only a few lichenicolous lichens establishing three-biont associations are known (RAMBOLD& Triebel 1992, checklist C). Just recently, some groups of non-lichenized fijngi with lichenicolous, algicolous or hepaticolous life habit were placed in the order Verrucariales. These are the genera Endococcus Nyl., Merismatium Zopf, Muellerella Hepp ex Müll. -
St Kilda Lichen Survey April 2014
A REPORT TO NATIONAL TRUST FOR SCOTLAND St Kilda Lichen Survey April 2014 Andy Acton, Brian Coppins, John Douglass & Steve Price Looking down to Village Bay, St. Kilda from Glacan Conachair Andy Acton [email protected] Brian Coppins [email protected] St. Kilda Lichen Survey Andy Acton, Brian Coppins, John Douglass, Steve Price Table of Contents 1 INTRODUCTION ............................................................................................................ 3 1.1 Background............................................................................................................. 3 1.2 Study areas............................................................................................................. 4 2 METHODOLOGY ........................................................................................................... 6 2.1 Field survey ............................................................................................................ 6 2.2 Data collation, laboratory work ................................................................................ 6 2.3 Ecological importance ............................................................................................. 7 2.4 Constraints ............................................................................................................. 7 3 RESULTS SUMMARY ................................................................................................... 8 4 MARITIME GRASSLAND (INCLUDING SWARDS DOMINATED BY PLANTAGO MARITIMA AND ARMERIA -
Lichenicolous Biota (Nos 201–230)
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Fritschiana Jahr/Year: 2015 Band/Volume: 80 Autor(en)/Author(s): Hafellner Josef Artikel/Article: Lichenicolous Biota (Nos 201-230) 21-41 - 21 - Lichenicolous Biota (Nos 201–230) Josef HAFELLNER* HAFELLNER Josef 2015: Lichenicolous Biota (Nos 201–230). – Frit- schiana (Graz) 80: 21–41. - ISSN 1024-0306. Abstract: The 9th fascicle (30 numbers) of the exsiccata 'Lichenicolous Biota' is published. The issue contains ma- terial of 20 non-lichenized fungal taxa (14 teleomorphs of ascomycetes, 4 anamorphic states of ascomycetes, 2 an- amorphic states of basidiomycetes) and 9 lichenized as- comycetes, including paratype material of Dimelaena li- chenicola K.Knudsen et al. (no 223), Miriquidica invadens Hafellner et al. (no 226, 227), and Stigmidium xantho- parmeliarum Hafellner (no 210). Furthermore, collections of the type species of the following genera are distributed: Illosporiopsis (I. christiansenii), Illosporium (I. carneum), Marchandiomyces (M. corallinus), Marchandiobasidium (M. aurantiacum, sub Erythricium aurantiacum), Micro- calicium (M. disseminatum), Nigropuncta (N. rugulosa), Paralecanographa (P. grumulosa), Phaeopyxis (P. punc- tum), Placocarpus (P. schaereri), Rhagadostoma (R. li- chenicola), and Stigmidium (S. schaereri). *Institut für Pflanzenwissenschaften, NAWI Graz, Karl-Franzens-Universität, Holteigasse 6, 8010 Graz, AUSTRIA e-mail: [email protected] Introduction The exsiccata 'Lichenicolous Biota' is continued with fascicle 9, containing 30 numbers. The exsiccata covers all lichenicolous biota, i.e., it is open not only to non- lichenized and lichenized fungi, but also to myxomycetes, bacteria, and even animals, whenever they cause a characteristic symptom on their host (e.g. discoloration or galls). -
Checklist of Lichenicolous Fungi and Lichenicolous Lichens of Svalbard, Including New Species, New Records and Revisions
Herzogia 26 (2), 2013: 323 –359 323 Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions Mikhail P. Zhurbenko* & Wolfgang von Brackel Abstract: Zhurbenko, M. P. & Brackel, W. v. 2013. Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions. – Herzogia 26: 323 –359. Hainesia bryonorae Zhurb. (on Bryonora castanea), Lichenochora caloplacae Zhurb. (on Caloplaca species), Sphaerellothecium epilecanora Zhurb. (on Lecanora epibryon), and Trimmatostroma cetrariae Brackel (on Cetraria is- landica) are described as new to science. Forty four species of lichenicolous fungi (Arthonia apotheciorum, A. aspicili- ae, A. epiphyscia, A. molendoi, A. pannariae, A. peltigerina, Cercidospora ochrolechiae, C. trypetheliza, C. verrucosar- ia, Dacampia engeliana, Dactylospora aeruginosa, D. frigida, Endococcus fusiger, E. sendtneri, Epibryon conductrix, Epilichen glauconigellus, Lichenochora coppinsii, L. weillii, Lichenopeltella peltigericola, L. santessonii, Lichenostigma chlaroterae, L. maureri, Llimoniella vinosa, Merismatium decolorans, M. heterophractum, Muellerella atricola, M. erratica, Pronectria erythrinella, Protothelenella croceae, Skyttella mulleri, Sphaerellothecium parmeliae, Sphaeropezia santessonii, S. thamnoliae, Stigmidium cladoniicola, S. collematis, S. frigidum, S. leucophlebiae, S. mycobilimbiae, S. pseudopeltideae, Taeniolella pertusariicola, Tremella cetrariicola, Xenonectriella lutescens, X. ornamentata, -
Working List of Prairie Restricted (Specialist) Insects in Wisconsin (11/26/2015)
Working List of Prairie Restricted (Specialist) Insects in Wisconsin (11/26/2015) By Richard Henderson Research Ecologist, WI DNR Bureau of Science Services Summary This is a preliminary list of insects that are either well known, or likely, to be closely associated with Wisconsin’s original native prairie. These species are mostly dependent upon remnants of original prairie, or plantings/restorations of prairie where their hosts have been re-established (see discussion below), and thus are rarely found outside of these settings. The list also includes some species tied to native ecosystems that grade into prairie, such as savannas, sand barrens, fens, sedge meadow, and shallow marsh. The list is annotated with known host(s) of each insect, and the likelihood of its presence in the state (see key at end of list for specifics). This working list is a byproduct of a prairie invertebrate study I coordinated from1995-2005 that covered 6 Midwestern states and included 14 cooperators. The project surveyed insects on prairie remnants and investigated the effects of fire on those insects. It was funded in part by a series of grants from the US Fish and Wildlife Service. So far, the list has 475 species. However, this is a partial list at best, representing approximately only ¼ of the prairie-specialist insects likely present in the region (see discussion below). Significant input to this list is needed, as there are major taxa groups missing or greatly under represented. Such absence is not necessarily due to few or no prairie-specialists in those groups, but due more to lack of knowledge about life histories (at least published knowledge), unsettled taxonomy, and lack of taxonomic specialists currently working in those groups. -
Australasian Lichenology Number 56, January 2005
Australasian Lichenology Number 56, January 2005 Australasian Lichenology Number 56, January 2005 ISSN 1328-4401 The Austral Pannaria immixta c.olonizes rock, bark, and occasionally bryophytes in both shaded and well-lit humid lowlands. Its two most distinctive traits are its squamulose thallus and its gyrose apothecial discs. 1 mm c:::::===- CONTENTS NEWS Kantvilas, ~ack Elix awarded the Acharius medal at IAL5 2 BOOK REVIEW Galloway, DJ-The Lichen Hunters, by Oliver Gilbert (2004) 4 RECENT LITERATURE ON AUSTRALASIAN LICHENS 7 ADDITIONAL LICHEN RECORDS FROM AUSTRALIA Elix, JA; Lumbsch, HT (55)-Diploschistes conception is 8 ARTICLES Archer, AW-Australian species in the genus Diorygma (Graphidaceae) ....... 10 Elix, JA; Blanco, 0; Crespo, A-A new species of Flauoparmelia (Parmeliaceae, lichenized Ascomycota) from Western Australia ...... .... ............................ ...... 12 Galloway, DJ; Sancho, LG-Umbilicaria murihikuana and U. robusta (Umbili cariaceae: Ascomycota), two new taxa from Aotearoa New Zealand .. ... .. ..... 16 Elix, JA; Bawingan, PA; Lardizaval, M; Schumm, F-Anew species ofMenegazzia (Parmeliaceae, lichenized Ascomycota) and new records of Parmeliaceae from Papua New Guinea and the Philippines .................................. .. .................... 20 Malcolm, WM-'ITansfer ofDimerella rubrifusca to Coenogonium ........ ......... 25 Johnson, PN- Lichen succession near Arthur's Pass, New Zealand ............... 26 NEWS JACK ELIXAWARDED THE ACHARIUS MEDALAT IAL5 The recent Fifth Conference of the International Association for Lichenology (1AL5) in Tartu, Estonia, was a highly successful event, and most Australasian lichenologists will have the opportunity to read of its various academic achieve ments in other media*. The social programme included the traditionallAL Din ner, where, after many days of symposia, poster sessions, excursions, meetings and other lichenological events, conference delegates mingle informally and dust away their weariness over food and drink. -
Yerba Buena Chapter – CNPS
PROGRAMS Everyone is welcome to attend membership meetings in the Recreation Room of the San Francisco YERBA County Fair Building (SFCFB) at 9 th Avenue and Lincoln Way in Golden Gate Park. The #71 and #44 buses stop at the building. The N-Judah, #6, #43, and #66 lines stop within 2 blocks. Before our BUENA programs, we take our speakers to dinner at Chang’s Kitchen, 1030 Irving Street, between 11 th and 12 th Avenues. Join us for good Chinese food and interesting conversation. Meet at the restaurant at 5:30 pm. RSVP appreciated but not required - call Jake Sigg at 415-731-3028 if you wish to notify. September 5, THURSDAY, 7:30 pm The Ecology and Plants of the Farallon Islands Speaker: Peter Pyle The Farallon Islands, part of the City and County of San Francisco, is a National Wildlife Refuge located NEW S 27 miles west of the Golden Gate Bridge. Cold ocean currents and other environmental factors there lead to high ocean productivity and a thriving marine wildlife ecology. Biologists working for PRBO/Point THE YERBA BUENA Blue Conservation Science and the U.S. Fish and Wildlife Service have resided on Southeast Farallon Island since April 1968, studying all aspects of the island's environment and ecology. Peter Pyle spent CHAPTER OF THE over 2,100 nights at the island's biological station in 1980-2003, primarily focused on birds, marine CALIFORNIA mammals, and white sharks, but also dabbling in everything else including bats, dragonflies, salamanders, NATIVE PLANT butterflies, crickets, mushrooms, and, yes, even the island's unique fog-whipped flora. -
Die Gattung Aspicilia, Ihre Ableitungen Nebst
Acta Botánica Malacitana, 16(1): 133-140 Malaga, 1991 DIE GAUG ASPICILIA, IE AEIUGE ES EMEKUGE OE CYOECAOIE ASCOCAOGAISAIO EI AEE GENERA E LECANORALES (ASCOMYCEES ICEISAI Josef HAFELLNER SUMMARY: Some evolutionary lines are shown within Aspicilia coll, and the taxonomical and nomenclatural consequences for species commonly classified in Sphaerothallia Nees are discussed. The generic rank (Lobothallia (Clauzade & Roux) Hafellner) is proposed for the Aspicilia radiosa group and the following new combinations are introduced: Lobothallia alphoplaca (Wahlenb. in Ach.)Haf., Lobothallia melanaspis (Ach.)Haf., Lobothallia praeradiosa (Nyl.)Haf. and Lobothallia radiosa (Hoffm.)Haf. Key words: Lichenized Ascomycetes, Aspicilia, Lobothallia, taxonomy. ZUSAMMENFASSUNG: Innerhalb der Gattung Aspicilia coll. werden einige Evolutionslinien aufgezeigt und taxonomische wie nomenklatorische Konsequenzen für gewtihnlich als Sphaerothallia Nees bezeichnete Arten werden diskutiert. Lobothallia (Clauzade & Roux) Hafellner wird in den Gattungsrang erhoben und folgende neue Kombinationen werden vorgeschlagen: Lobythallia alphoplaca (Wahlenb. in Ach) Haf., Lobothallia melanaspis (Ach) Haf., Lobothallia praeradiosa (NYL.) Haf. und Lobothallia radiosa (Hoffm.)Haf. Schltisselwórter: Licheniscerte Ascomyceten, Aspiclia, Lobothallia, Taxonomie. EINLEITUNG Der schon von Massalongo (1852) beschriebenen Gattung Aspicilia war emn wechselvolles Schicksal beschieden. Ober lange Zeit in Lecanora eingeschlossen und oft in dieser als Subgenus bewertet (z.B. Magnusson 1939, Poelt 1958, Eigler 1969), hat sich erst in jtingerer Zeit die Erkenntnis allgemein durchgesetzt, daB Aspicilia mit Lecanora nicht ndher verwandt ist (Poelt 1974, Roux 1977, Hawksworth & al. 1980, Santesson 1984, Clauzade & Roux 1984, 1987, Hafellner 1984, Esnault 1985), obwohl einige Autoren schon früh die Selbstdndigkeit betont hatten (z.B. Kürber 1855, Hue 1910, Choisy 1929). Poelt (1974) hat sogar die neue Familie Aspiciliaceae vorgeschlagen, urn die taxonomische Distanz zwischen Aspicilia und Lecanora augenfdllig zu machen. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S.