Neural Reconstruction of Bone-Eating Osedax Spp. (Annelida) and Evolution of the Siboglinid Nervous System
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Smith and De Leo Barkley Canyon Bone
Biodiversity, connectivity and ecosystem function in organic-rich whale-bone and wood- fall habitats in Barkley Canyon PIs Craig R. Smith1 and Fabio De Leo2 1University of Hawaii at Manoa, 2ONC Background: Organic-rich habitat islands support specialized communities throughout natural ecosystems and often play fundamental roles in maintaining alpha and beta diversity, thus facilitating adaptive radiation and evolutionary novelty. In the deep sea, whale-bone and wood falls occur widely and may contribute fundamentally to biodiversity and evolutionary novelty; nonetheless, large-scale patterns of biodiversity, connectivity and ecosystem function in these organic-rich metacommunies remain essentially unexplored. We propose to deploy whale bones and wood in Barkley Canyon at ONC POD3 as part of a novel comparative experimental approach, in which bone and wood substrates are being used to evaluate bathymetric, regional and inter-basin variations in biodiversity and connectivity, as well as interactions between biodiversity and ecosystem function, in whale-bone and wood- fall habitats at the deep-sea floor. The experiments in Barkley Canyon will test fundamental hypotheses concerning biodiversity and biogeography of resource-rich habitats in energy- and oxygen-limited deep-sea environments, and explore the utility of whale-bone and wood falls as model experimental systems to address patterns of connectivity and decomposer function in the deep sea. General Study Design: Two packages of humpback (Megaptera novaeangliae) ribs, and two blocks of Douglas Fir (Pseudotsuga menziesii), will be deployed by ROV on the seafloor at 890- m depth in Barkley Canyon, within view of the POD3 Video Camera (Fig. 1). After deployment, video monitoring of the bone/wood packages will occur every three hours for 5 minutes, with a different experimental package monitored during each 3-h interval; thus, each package will be monitored for two 5-minute periods per day. -
Editorial Submitting an Article
Journal of Natural Science Collections 2015: Volume 2 Editorial Welcome to the second Volume of the Journal The articles presented here aim to provide guid- of Natural Science Collections : a Journal for ance for working with natural science collec- you who work with natural science collections tions. If colleagues are wanting to undertake everyday. I hope that the articles in this Volume specific conservation work on areas in their prove to be interesting, and useful for all. collection, and are unsure as where to begin, please do contact one of the NatSCA commit- There are a large variety of topics covered in tee who will be able to advise. this Volume. The first article examines proto- cols for destructive sampling in natural history All the articles from Volume 1 are now available specimens, providing a nice case study and for free to view on the NatSCA website destructive sampling forms for researchers that (www.natsca.org). Please also have a look at can be adapted for your own institution. A pa- the NatSCA blog, which has more informal write per examines the fascinating natural history ups of views, book reviews and conferences displays of old and new, with surprising results. (http://naturalsciencecollections.wordpress.com/). An interesting article can assist with the mu- seum curators decision to lend specimens for I am very excited about the NatSCA 2015 con- research, where the article examines whether ference and AGM. The theme is all about how Micro-CT scanning affects DNA in specimens. we use traditional and social media to talk Conservators share their methods of cleaning a about our collections. -
Phylogenetic Relationships of Serpulidae (Annelida: Polychaeta) Based on 18S Rdna Sequence Data, and Implications for Opercular Evolution Janina Lehrkea,Ã, Harry A
ARTICLE IN PRESS Organisms, Diversity & Evolution 7 (2007) 195–206 www.elsevier.de/ode Phylogenetic relationships of Serpulidae (Annelida: Polychaeta) based on 18S rDNA sequence data, and implications for opercular evolution Janina Lehrkea,Ã, Harry A. ten Hoveb, Tara A. Macdonaldc, Thomas Bartolomaeusa, Christoph Bleidorna,1 aInstitute for Zoology, Animal Systematics and Evolution, Freie Universitaet Berlin, Koenigin-Luise-Street 1-3, 14195 Berlin, Germany bZoological Museum, University of Amsterdam, P.O. Box 94766, 1090 GT Amsterdam, The Netherlands cBamfield Marine Sciences Centre, Bamfield, British Columbia, Canada, V0R 1B0 Received 19 December 2005; accepted 2 June 2006 Abstract Phylogenetic relationships of (19) serpulid taxa (including Spirorbinae) were reconstructed based on 18S rRNA gene sequence data. Maximum likelihood, Bayesian inference, and maximum parsimony methods were used in phylogenetic reconstruction. Regardless of the method used, monophyly of Serpulidae is confirmed and four monophyletic, well- supported major clades are recovered: the Spirorbinae and three groups hitherto referred to as the Protula-, Serpula-, and Pomatoceros-group. Contrary to the taxonomic literature and the hypothesis of opercular evolution, the Protula- clade contains non-operculate (Protula, Salmacina) and operculate taxa both with pinnulate and non-pinnulate peduncle (Filograna vs. Vermiliopsis), and most likely is the sister group to Spirorbinae. Operculate Serpulinae and poorly or non-operculate Filograninae are paraphyletic. It is likely that lack of opercula in some serpulid genera is not a plesiomorphic character state, but reflects a special adaptation. r 2007 Gesellschaft fu¨r Biologische Systematik. Published by Elsevier GmbH. All rights reserved. Keywords: Serpulidae; Phylogeny; Operculum; 18S rRNA gene; Annelida; Polychaeta Introduction distinctive calcareous tubes and bilobed tentacular crowns, each with numerous radioles that bear shorter Serpulids are common members of marine hard- secondary branches (pinnules) on the inner side. -
The Potent Respiratory System of Osedax Mucofloris (Siboglinidae, Annelida) - a Prerequisite for the Origin of Bone-Eating Osedax?
The Potent Respiratory System of Osedax mucofloris (Siboglinidae, Annelida) - A Prerequisite for the Origin of Bone-Eating Osedax? Randi S. Huusgaard1, Bent Vismann1, Michael Ku¨ hl1,2, Martin Macnaugton1, Veronica Colmander1, Greg W. Rouse3, Adrian G. Glover4, Thomas Dahlgren5, Katrine Worsaae1* 1 Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark, 2 Plant Functional Biology and Climate Change Cluster, Department of Environmental Science, University of Technology Sydney, Sydney, Australia, 3 Scripps Institution of Oceanography, University of California San Diego, San Diego, California, United States of America, 4 Zoology Department, The Natural History Museum, London, United Kingdom, 5 Uni Environment/Uni Research, Bergen, Norway Abstract Members of the conspicuous bone-eating genus, Osedax, are widely distributed on whale falls in the Pacific and Atlantic Oceans. These gutless annelids contain endosymbiotic heterotrophic bacteria in a branching root system embedded in the bones of vertebrates, whereas a trunk and anterior palps extend into the surrounding water. The unique life style within a bone environment is challenged by the high bacterial activity on, and within, the bone matrix possibly causing O2 depletion, and build-up of potentially toxic sulphide. We measured the O2 distribution around embedded Osedax and showed that the bone microenvironment is anoxic. Morphological studies showed that ventilation mechanisms in Osedax are restricted to the anterior palps, which are optimized for high O2 uptake by possessing a large surface area, large surface to volume ratio, and short diffusion distances. The blood vascular system comprises large vessels in the trunk, which facilitate an ample supply of oxygenated blood from the anterior crown to a highly vascularised root structure. -
Phylogenomics of Tubeworms (Siboglinidae, Annelida) and Comparative Performance of Different Reconstruction Methods
Zoologica Scripta Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of different reconstruction methods YUANNING LI,KEVIN M. KOCOT,NATHAN V. WHELAN,SCOTT R. SANTOS,DAMIEN S. WAITS, DANIEL J. THORNHILL &KENNETH M. HALANYCH Submitted: 28 January 2016 Li, Y., Kocot, K.M., Whelan, N.V., Santos, S.R., Waits, D.S., Thornhill, D.J. & Halanych, Accepted: 18 June 2016 K.M. (2016). Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative perfor- doi:10.1111/zsc.12201 mance of different reconstruction methods. —Zoologica Scripta, 00: 000–000. Deep-sea tubeworms (Annelida, Siboglinidae) represent dominant species in deep-sea chemosynthetic communities (e.g. hydrothermal vents and cold methane seeps) and occur in muddy sediments and organic falls. Siboglinids lack a functional digestive tract as adults, and they rely on endosymbiotic bacteria for energy, making them of evolutionary and physi- ological interest. Despite their importance, inferred evolutionary history of this group has been inconsistent among studies based on different molecular markers. In particular, place- ment of bone-eating Osedax worms has been unclear in part because of their distinctive biol- ogy, including harbouring heterotrophic bacteria as endosymbionts, displaying extreme sexual dimorphism and exhibiting a distinct body plan. Here, we reconstructed siboglinid evolutionary history using 12 newly sequenced transcriptomes. We parsed data into three data sets that accommodated varying levels of missing data, and we evaluate effects of miss- ing data on phylogenomic inference. Additionally, several multispecies-coalescent approaches and Bayesian concordance analysis (BCA) were employed to allow for a compar- ison of results to a supermatrix approach. Every analysis conducted herein strongly sup- ported Osedax being most closely related to the Vestimentifera and Sclerolinum clade, rather than Frenulata, as previously reported. -
An EST Screen from the Annelid Pomatoceros Lamarckii Reveals
BMC Evolutionary Biology BioMed Central Research article Open Access An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals Tokiharu Takahashi*1,4, Carmel McDougall2,4,6, Jolyon Troscianko3, Wei- Chung Chen4, Ahamarshan Jayaraman-Nagarajan5, Sebastian M Shimeld4 and David EK Ferrier*2,4 Address: 1Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, UK, 2The Scottish Oceans Institute, University of St. Andrews, St. Andrews, Fife, UK, 3Centre for Ornithology, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, UK, 4Department of Zoology, University of Oxford, South Parks Road, Oxford, UK, 5Department of Biochemistry, University of Oxford, South Parks Road, Oxford, UK and 6School of Biological Sciences, University of Queensland, St Lucia, Queensland, Australia Email: Tokiharu Takahashi* - [email protected]; Carmel McDougall - [email protected]; Jolyon Troscianko - [email protected]; Wei-Chung Chen - [email protected]; Ahamarshan Jayaraman- Nagarajan - [email protected]; Sebastian M Shimeld - [email protected]; David EK Ferrier* - dekf@st- andrews.ac.uk * Corresponding authors Published: 25 September 2009 Received: 1 April 2009 Accepted: 25 September 2009 BMC Evolutionary Biology 2009, 9:240 doi:10.1186/1471-2148-9-240 This article is available from: http://www.biomedcentral.com/1471-2148/9/240 © 2009 Takahashi et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. -
Jonsc Vol2-7.PDF
http://www.natsca.org Journal of Natural Science Collections Title: 100 years of deep‐sea tube worms in the collections of the Natural History Museum, London Author(s): Sherlock, E., Neal, L. & Glover, A. Source: Sherlock, E., Neal, L. & Glover, A. (2014). 100 years of deep‐sea tube worms in the collections of the Natural History Museum, London. Journal of Natural Science Collections, Volume 2, 47 ‐ 53. URL: http://www.natsca.org/article/2079 NatSCA supports open access publication as part of its mission is to promote and support natural science collections. NatSCA uses the Creative Commons Attribution License (CCAL) http://creativecommons.org/licenses/by/2.5/ for all works we publish. Under CCAL authors retain ownership of the copyright for their article, but authors allow anyone to download, reuse, reprint, modify, distribute, and/or copy articles in NatSCA publications, so long as the original authors and source are cited. Journal of Natural Science Collections 2015: Volume 2 100 years of deep-sea tubeworms in the collections of the Natural History Museum, London Emma Sherlock, Lenka Neal & Adrian G. Glover Life Sciences Department, The Natural History Museum, Cromwell Rd, London SW7 5BD, UK Received: 14th Sept 2014 Corresponding author: [email protected] Accepted: 18th Dec 2014 Abstract Despite having being discovered relatively recently, the Siboglinidae family of poly- chaetes have a controversial taxonomic history. They are predominantly deep sea tube- dwelling worms, often referred to simply as ‘tubeworms’ that include the magnificent me- tre-long Riftia pachyptila from hydrothermal vents, the recently discovered ‘bone-eating’ Osedax and a diverse range of other thin, tube-dwelling species. -
University of Copenhagen
The potent respiratory system of Osedax mucofloris (Siboglinidae, Annelida) - a prerequisite for the origin of bone-eating Osedax? Huusgaard, Randi; Vismann, Bent; Kühl, Michael; Macnaughton, Martin Oliver; Colmander, Veronica; Rouse, Greg W.; Glover, Adrian G.; Dahlgren, Thomas; Worsaae, Katrine Published in: PLoS ONE DOI: 10.1371/journal.pone.0035975 Publication date: 2012 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Huusgaard, R., Vismann, B., Kühl, M., Macnaughton, M. O., Colmander, V., Rouse, G. W., ... Worsaae, K. (2012). The potent respiratory system of Osedax mucofloris (Siboglinidae, Annelida) - a prerequisite for the origin of bone-eating Osedax? PLoS ONE, 7(4), [e35975]. https://doi.org/10.1371/journal.pone.0035975 Download date: 08. Apr. 2020 The Potent Respiratory System of Osedax mucofloris (Siboglinidae, Annelida) - A Prerequisite for the Origin of Bone-Eating Osedax? Randi S. Huusgaard1, Bent Vismann1, Michael Ku¨ hl1,2, Martin Macnaugton1, Veronica Colmander1, Greg W. Rouse3, Adrian G. Glover4, Thomas Dahlgren5, Katrine Worsaae1* 1 Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark, 2 Plant Functional Biology and Climate Change Cluster, Department of Environmental Science, University of Technology Sydney, Sydney, Australia, 3 Scripps Institution of Oceanography, University of California San Diego, San Diego, California, United States of America, 4 Zoology Department, The Natural History Museum, London, United Kingdom, 5 Uni Environment/Uni Research, Bergen, Norway Abstract Members of the conspicuous bone-eating genus, Osedax, are widely distributed on whale falls in the Pacific and Atlantic Oceans. These gutless annelids contain endosymbiotic heterotrophic bacteria in a branching root system embedded in the bones of vertebrates, whereas a trunk and anterior palps extend into the surrounding water. -
Evolutionary Crossroads in Developmental Biology: Annelids David E
PRIMER SERIES PRIMER 2643 Development 139, 2643-2653 (2012) doi:10.1242/dev.074724 © 2012. Published by The Company of Biologists Ltd Evolutionary crossroads in developmental biology: annelids David E. K. Ferrier* Summary whole to allow more robust comparisons with other phyla, as well Annelids (the segmented worms) have a long history in studies as for understanding the evolution of diversity. Much of annelid of animal developmental biology, particularly with regards to evolutionary developmental biology research, although by no their cleavage patterns during early development and their means all of it, has tended to concentrate on three particular taxa: neurobiology. With the relatively recent reorganisation of the the polychaete (see Glossary, Box 1) Platynereis dumerilii; the phylogeny of the animal kingdom, and the distinction of the polychaete Capitella teleta (previously known as Capitella sp.); super-phyla Ecdysozoa and Lophotrochozoa, an extra stimulus and the oligochaete (see Glossary, Box 1) leeches, such as for studying this phylum has arisen. As one of the major phyla Helobdella. Even within this small selection of annelids, a good within Lophotrochozoa, Annelida are playing an important role range of the diversity in annelid biology is evident. Both in deducing the developmental biology of the last common polychaetes are marine, whereas Helobdella is a freshwater ancestor of the protostomes and deuterostomes, an animal from inhabitant. The polychaetes P. dumerilii and C. teleta are indirect which >98% of all described animal species evolved. developers (see Glossary, Box 1), with a larval stage followed by metamorphosis into the adult form, whereas Helobdella is a direct Key words: Annelida, Polychaetes, Segmentation, Regeneration, developer (see Glossary, Box 1), with the embryo developing into Central nervous system the worm form without passing through a swimming larval stage. -
Zootaxa, Taxonomy of Serpulidae (Annelida, Polychaeta)
ZOOTAXA 2036 Taxonomy of Serpulidae (Annelida, Polychaeta): The state of affairs HARRY A. TEN HOVE & ELENA K. KUPRIYANOVA Magnolia Press Auckland, New Zealand Harry A. ten Hove & Elena K. Kupriyanova Taxonomy of Serpulidae (Annelida, Polychaeta): The state of affairs (Zootaxa 2036) 126 pp.; 30 cm. 16 March 2009 ISBN 978-1-86977-327-4 (paperback) ISBN 978-1-86977-328-1 (Online edition) FIRST PUBLISHED IN 2009 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2009 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. ISSN 1175-5326 (Print edition) ISSN 1175-5334 (Online edition) 2 · Zootaxa 2036 © 2009 Magnolia Press TEN HOVE & KUPRIYANOVA Zootaxa 2036: 1–126 (2009) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2009 · Magnolia Press ISSN 1175-5334 (online edition) Taxonomy of Serpulidae (Annelida, Polychaeta): The state of affairs HARRY A. TEN HOVE1 & ELENA K. KUPRIYANOVA2 1Zoological Museum, University of Amsterdam POB 94766, 1090 GT Amsterdam, The Netherlands E-mail: [email protected] 2Earth and Environmental Sciences, University of Adelaide SA 5005 Adelaide Australia1 E-mail: [email protected], [email protected] Table of contents Abstract .............................................................................................................................................................................. -
Whale-Fall Ecosystems: Recent Insights Into Ecology, Paleoecology, and Evolution
MA07CH24-Smith ARI 28 October 2014 12:32 Whale-Fall Ecosystems: Recent Insights into Ecology, Paleoecology, and Evolution Craig R. Smith,1 Adrian G. Glover,2 Tina Treude,3 Nicholas D. Higgs,4 and Diva J. Amon1 1Department of Oceanography, University of Hawaii, Honolulu, Hawaii 96822; email: [email protected], [email protected] 2Department of Life Sciences, Natural History Museum, SW7 5BD London, United Kingdom; email: [email protected] 3GEOMAR Helmholtz Centre for Ocean Research Kiel, 24148 Kiel, Germany; email: [email protected] 4Marine Institute, Plymouth University, PL4 8AA Plymouth, United Kingdom; email: [email protected] Annu. Rev. Mar. Sci. 2015. 7:571–96 Keywords First published online as a Review in Advance on ecological succession, chemosynthesis, speciation, vent/seep faunas, September 10, 2014 Osedax, sulfate reduction The Annual Review of Marine Science is online at marine.annualreviews.org Abstract This article’s doi: Whale falls produce remarkable organic- and sulfide-rich habitat islands at 10.1146/annurev-marine-010213-135144 Access provided by 168.105.82.76 on 01/12/15. For personal use only. the seafloor. The past decade has seen a dramatic increase in studies of mod- Copyright c 2015 by Annual Reviews. ern and fossil whale remains, yielding exciting new insights into whale-fall All rights reserved Annu. Rev. Marine. Sci. 2015.7:571-596. Downloaded from www.annualreviews.org ecosystems. Giant body sizes and especially high bone-lipid content allow great-whale carcasses to support a sequence of heterotrophic and chemosyn- thetic microbial assemblages in the energy-poor deep sea. -
Pliocene Stratigraphic Paleobiology in Tuscany and the Fossil Record Of
FLORE Repository istituzionale dell'Università degli Studi di Firenze Pliocene stratigraphic paleobiology in Tuscany and the fossil record of marine megafauna Questa è la Versione finale referata (Post print/Accepted manuscript) della seguente pubblicazione: Original Citation: Pliocene stratigraphic paleobiology in Tuscany and the fossil record of marine megafauna / Dominici, Stefano; Danise, Silvia; Benvenuti, Marco. - In: EARTH-SCIENCE REVIEWS. - ISSN 0012-8252. - ELETTRONICO. - 176(2018), pp. 277- 310. [10.1016/j.earscirev.2017.09.018] Availability: This version is available at: 2158/1139176 since: 2020-12-18T15:37:43Z Published version: DOI: 10.1016/j.earscirev.2017.09.018 Terms of use: Open Access La pubblicazione è resa disponibile sotto le norme e i termini della licenza di deposito, secondo quanto stabilito dalla Policy per l'accesso aperto dell'Università degli Studi di Firenze (https://www.sba.unifi.it/upload/policy-oa-2016-1.pdf) Publisher copyright claim: (Article begins on next page) 10 October 2021 Earth-Science Reviews 176 (2018) xxx–xxx Contents lists available at ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev Pliocene stratigraphic paleobiology in Tuscany and the fossil record of MARK marine megafauna ⁎ Stefano Dominicia, , Silvia Daniseb, Marco Benvenutic a Università degli Studi di Firenze, Museo di Storia Naturale, Firenze, Italy b Plymouth University, School of Geography, Earth and Environmental Sciences, Plymouth, United Kingdom c Università degli Studi di Firenze, Dipartimento di Scienze della Terra, Firenze, Italy ABSTRACT Tuscany has a rich Pliocene record of marine megafauna (MM), including mysticetes, odontocetes, sirenians and seals among the mammals, and six orders of sharks among the elasmobranchs.