Coralline Algae (Rhodophyta) in a Changing World: Integrating Ecological, Physiological, and Geochemical Responses to Global Change
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Three Challenges to Contemporaneous Taxonomy from a Licheno-Mycological Perspective
Megataxa 001 (1): 078–103 ISSN 2703-3082 (print edition) https://www.mapress.com/j/mt/ MEGATAXA Copyright © 2020 Magnolia Press Review ISSN 2703-3090 (online edition) https://doi.org/10.11646/megataxa.1.1.16 Three challenges to contemporaneous taxonomy from a licheno-mycological perspective ROBERT LÜCKING Botanischer Garten und Botanisches Museum, Freie Universität Berlin, Königin-Luise-Straße 6–8, 14195 Berlin, Germany �[email protected]; https://orcid.org/0000-0002-3431-4636 Abstract Nagoya Protocol, and does not need additional “policing”. Indeed, the Nagoya Protocol puts the heaviest burden on This paper discusses three issues that challenge contempora- taxonomy and researchers cataloguing biodiversity, whereas neous taxonomy, with examples from the fields of mycology for the intended target group, namely those seeking revenue and lichenology, formulated as three questions: (1) What is gain from nature, the protocol may not actually work effec- the importance of taxonomy in contemporaneous and future tively. The notion of currently freely accessible digital se- science and society? (2) An increasing methodological gap in quence information (DSI) to become subject to the protocol, alpha taxonomy: challenge or opportunity? (3) The Nagoya even after previous publication, is misguided and conflicts Protocol: improvement or impediment to the science of tax- with the guidelines for ethical scientific conduct. Through onomy? The importance of taxonomy in society is illustrated its implementation of the Nagoya Protocol, Colombia has using the example of popular field guides and digital me- set a welcome precedence how to exempt taxonomic and dia, a billion-dollar business, arguing that the desire to name systematic research from “access to genetic resources”, and species is an intrinsic feature of the cognitive component of hopefully other biodiversity-rich countries will follow this nature connectedness of humans. -
Succession of Crustose Coralline Red Algae (Rhodophyta) on Coralgal Reefs Exposed to Physical Disturbance in the Southwest Atlantic
Helgol Mar Res (2013) 67:687–696 DOI 10.1007/s10152-013-0354-3 ORIGINAL ARTICLE Succession of crustose coralline red algae (Rhodophyta) on coralgal reefs exposed to physical disturbance in the southwest Atlantic Rodrigo Mariath • Rafael Riosmena Rodriguez • Marcia A. O. Figueiredo Received: 4 November 2011 / Revised: 25 February 2013 / Accepted: 3 April 2013 / Published online: 14 May 2013 Ó Springer-Verlag Berlin Heidelberg and AWI 2013 Abstract Biological and physical disturbances create the abundant. Physical disturbance increased crust recruitment conditions for species succession in any biological eco- and the low-light environment created by sediments. The system. In particular, coral reefs are susceptible to this data demonstrated coexistence among crustose coralline process because of the complexity of their ecological species and a tolerance to physical disturbance, which relationships. In the southwest Atlantic, nearshore reefs are seemed to favor the thinner crusts of P. conicum over mostly coated by a thin layer of coralline crusts rather than thick-crust species during succession. The succession pat- stony corals. However, little is known about the succession tern observed in this subtropical Brazilian coral reef differs of crustose coralline algae. We studied this process by from that described for shallow tropical reef communities. means of a series of experimental and control discs exposed to physical disturbance. Our results showed that Keywords CCA Á Coral reef Á Benthic communities Á the dominant species in natural conditions, Pneophyllum Brazil conicum, had early recruits and later became dominant on the discs, replicating the community structure of the actual reef. This species had mature reproductive structures and Introduction available spores from the beginning of the colonization experiments. -
Biodiversity of Kelp Forests and Coralline Algae Habitats in Southwestern Greenland
diversity Article Biodiversity of Kelp Forests and Coralline Algae Habitats in Southwestern Greenland Kathryn M. Schoenrock 1,2,* , Johanne Vad 3,4, Arley Muth 5, Danni M. Pearce 6, Brice R. Rea 7, J. Edward Schofield 7 and Nicholas A. Kamenos 1 1 School of Geographical and Earth Sciences, University of Glasgow, Gregory Building, Lilybank Gardens, Glasgow G12 8QQ, UK; [email protected] 2 Botany and Plant Science, National University of Ireland Galway, Ryan Institute, University Rd., H91 TK33 Galway, Ireland 3 School of Engineering, Geosciences, Infrastructure and Society, Heriot-Watt University, Riccarton Campus, Edinburgh EH14 4AS, UK; [email protected] 4 School of Geosciences, Grant Institute, University of Edinburgh, Edinburgh EH28 8, UK 5 Marine Science Institute, The University of Texas at Austin, College of Natural Sciences, 750 Channel View Drive, Port Aransas, TX 78373-5015, USA; [email protected] 6 Department of Biological and Environmental Sciences, School of Life and Medical Sciences, University of Hertfordshire, Hatfield, Hertfordshire AL10 9AB, UK; [email protected] 7 Geography & Environment, School of Geosciences, University of Aberdeen, Elphinstone Road, Aberdeen AB24 3UF, UK; [email protected] (B.R.R.); j.e.schofi[email protected] (J.E.S.) * Correspondence: [email protected]; Tel.: +353-87-637-2869 Received: 22 August 2018; Accepted: 22 October 2018; Published: 25 October 2018 Abstract: All marine communities in Greenland are experiencing rapid environmental change, and to understand the effects on those structured by seaweeds, baseline records are vital. The kelp and coralline algae habitats along Greenland’s coastlines are rarely studied, and we fill this knowledge gap for the area around Nuuk, west Greenland. -
Some Considerations for Analyzing Biodiversity Using Integrative
Some considerations for analyzing biodiversity using integrative metagenomics and gene networks Lucie Bittner, Sébastien Halary, Claude Payri, Corinne Cruaud, Bruno de Reviers, Philippe Lopez, Eric Bapteste To cite this version: Lucie Bittner, Sébastien Halary, Claude Payri, Corinne Cruaud, Bruno de Reviers, et al.. Some considerations for analyzing biodiversity using integrative metagenomics and gene networks. Biology Direct, BioMed Central, 2010, 5 (5), pp.47. 10.1186/1745-6150-5-47. hal-02922363 HAL Id: hal-02922363 https://hal.archives-ouvertes.fr/hal-02922363 Submitted on 26 Aug 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Bittner et al. Biology Direct 2010, 5:47 http://www.biology-direct.com/content/5/1/47 HYPOTHESIS Open Access Some considerations for analyzing biodiversity using integrative metagenomics and gene networks Lucie Bittner1†, Sébastien Halary2†, Claude Payri3, Corinne Cruaud4, Bruno de Reviers1, Philippe Lopez2, Eric Bapteste2* Abstract Background: Improving knowledge of biodiversity will benefit conservation biology, enhance bioremediation studies, and could lead to new medical treatments. However there is no standard approach to estimate and to compare the diversity of different environments, or to study its past, and possibly, future evolution. -
An Account of Common Crustose Coralline Algae
D.I. Walker and F.E. Wells (Eds) 1999. The Seagrass Flora and Fauna of Rottnest Island, Western Australia. Western Australian Museum, Perth. CORE An account of common crustose coralline algae Metadata, citation and similar papers at core.ac.uk Provided(Corallinales, by Research Repository Rhodophyta) from macrophyte communities at Rottnest Island, Western Australia. by C.B. Sim Department of Botany, University of Western Australia, Nedlands, 6907, Western Australia and "' R.A. Townsend School of Biological Sciences and Biotechnology, Division of Science and Engineering, Murdoch University, Murdoch 6150, Western Australia ABSTRACT Meaningful interpretation of ecological experimentation can only be made after knowledge of the floral composition of an area is known. Crustose coralline algae have a reputation among phycologists as being a difficult group of organisms to identify to species level. Crustose coralline algae (Corallinales, Rhodophyta) cover the substratum in most macrophyte communities; their ecology is poorly understood. The aim of this work was to develop a species list and generic key for crustose coralline algae found in macrophyte communities around Rottnest Island, Western Australia. Eleven species belonging to seven genera were identified from limestone substrata in kelp and mixed macroalgal communities. A key to the common genera of crustose coralline algae found in these communities is also provided. The key, aimed at ecologists with limited knowledge of coralline taxonomy and anatomy, uses gross external and easily recognisable internal characters. The crustose coralline algal flora of Rottnest Island is a mixture of Indo-West Pacific and southern temperate species. Species such as Hydrolithon onkodes which has an extensive tropical and subtropical range were found at most sites sampled. -
Snps Reveal Geographical Population Structure of Corallina Officinalis (Corallinaceae, Rhodophyta)
SNPs reveal geographical population structure of Corallina officinalis (Corallinaceae, Rhodophyta) Chris Yesson1, Amy Jackson2, Steve Russell2, Christopher J. Williamson2,3 and Juliet Brodie2 1 Institute of Zoology, Zoological Society of London, London, UK 2 Natural History Museum, Department of Life Sciences, London, UK 3 Schools of Biological and Geographical Sciences, University of Bristol, Bristol, UK CONTACT: Chris Yesson. Email: [email protected] 1 Abstract We present the first population genetics study of the calcifying coralline alga and ecosystem engineer Corallina officinalis. Eleven novel SNP markers were developed and tested using Kompetitive Allele Specific PCR (KASP) genotyping to assess the population structure based on five sites around the NE Atlantic (Iceland, three UK sites and Spain), spanning a wide latitudinal range of the species’ distribution. We examined population genetic patterns over the region using discriminate analysis of principal components (DAPC). All populations showed significant genetic differentiation, with a marginally insignificant pattern of isolation by distance (IBD) identified. The Icelandic population was most isolated, but still had genotypes in common with the population in Spain. The SNP markers presented here provide useful tools to assess the population connectivity of C. officinalis. This study is amongst the first to use SNPs on macroalgae and represents a significant step towards understanding the population structure of a widespread, habitat forming coralline alga in the NE Atlantic. KEYWORDS Marine red alga; Population genetics; Calcifying macroalga; Corallinales; SNPs; Corallina 2 Introduction Corallina officinalis is a calcified geniculate (i.e. articulated) coralline alga that is wide- spread on rocky shores in the North Atlantic (Guiry & Guiry, 2017; Brodie et al., 2013; Williamson et al., 2016). -
ALGAE, CALCIFIED Zone from the Arctic to the Antarctic, from Temperate Regions to the Tropics
climatic fl uctuations infl uence the amount of nutrients Ochrophyta (red, green, and brown algae, respectively). that are brought up from the ocean’s depth and fuel the Today, calcifi ed algae dominate biotic communities in growth of all photosynthetic marine organisms. Changes in many subtidal, intertidal, and tidepool environments the abundance of phytoplankton or nutrients in the ocean worldwide. They build reefs, contribute to sediments, water that overlay seaweed-covered shores are likely to sig- and are home to numerous plants and animals. In sum, nifi cantly alter the ecological character of these shorelines. their unique attributes enable them to play key ecological The slippery and slimy seaweeds that can sometimes and geological roles in marine ecosystems. make walking along the shore at low tide a challenging affair are a fascinating yet often overlooked component THE DIVERSITY AND IMPORTANCE of healthy, functioning marine ecosystems. We know that OF CALCIFIED ALGAE many species depend upon seaweeds for food and habitat. Among the different groups of calcifi ed algae, the mode We know their moist cover provides a desirable refuge and extent of calcifi cation varies widely. For example, for many intertidal inhabitants during low tide. Despite the brown alga Padina develops a thin white calcifi ed the enormous productivity and diversity of seaweeds, coating, whereas the green alga Acetabularia and the red we still know surprisingly little about the contribution alga L iagora incorporate low concentrations of calcium that seaweeds make to coastal ecosystem production and carbonate directly into their fl exible thalli. Other, more functioning. The enormous diversity in form, life history, rigid but still fl exible, calcifi ed algae include the red alga ecology, and evolutionary history of seaweeds make them Galaxaura and the green algae Udotea and Penicillus. -
Southern California Tidepool Organisms
Southern California Tidepool Organisms Bryozoans – colonial moss animals Cnidarians – stinging invertebrates Derby Hat Bryozoan Red Bryozoan Aggregating Anemone Giant Green Anemone Sunburst Anemone Eurystomella spp. Watersipora spp. Anthopleura elegantissima Anthopleura xanthogrammica Anthopleura sola closed closed closed open 2 in (5 cm) open 6.7 in (17 cm) open 6.5 in (12cm) Echinoderms – spiny-skinned invertebrates Sea Stars note signs of wasting Bat Star Brittle Star Ochre Star Giant Pink Sea Star Six Armed Sea Star Sunflower Star Patiria miniata (various genuses) Pisaster ochraceus Pisaster brevispinus Leptasterias spp. Pycnopodia helianthoides Purple or Red webbed arms 10 in 11 in 31.5 in Various sizes 4.7 in (12 cm) Long, thin arms (25 cm) (28 cm) 6 arms, 2.4 in(6 cm) (80 cm) Sand Dollar Sea Cucumbers Urchins note signs of balding Eccentric Sand Dollar California Sea Cucumber Warty Sea Cucumber Purple Urchins Red Urchins Dendraster excentricus Parastichopus californicus Parastichopus parvimensis Strongylocentrotus Strongylocentrotus purpuratus franciscanus has small 4 in 7in black tipped warts (10 cm) (17 cm) 4 in (10 cm) 16 in (40 cm) 10 in (25 cm) long (projections) Mollusks – soft invertebrates with a shell or remnant shell Snails (single, spiraled shelled invertebrate) Turban Snail Periwinkle Snail Kellet’s Whelk Snail Dog Whelk Snail Unicorn Whelk Snail Scaly Tube Snail Tegula spp. Littorina spp. Kelletia kelletii (Dogwinkles) Acanthinucella spp. Serpulorbis squamigerus Nucella spp. Top view 6 ½ in 2 in 1.6 in (16.5 cm) (5 cm) 1 in (2.5 cm) ½ in (1.5 cm) (4cm) 5 in (13 cm) Bi-Valves (2 shelled invertebrates) Abalone California Mussel Blue Mussel Olympia Oyster Pacific Oyster Rock Scallop Haliotis spp. -
A Comparative Study of Manglicolous Lichens and Their Distribution Inside Bhitarkanika National Park (Odisha), India
Studies in Fungi 2 (1): 1–13 (2017) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/ 2/1/1 Copyright © Mushroom Research Foundation A comparative study of manglicolous lichens and their distribution inside Bhitarkanika National Park (Odisha), India 1 4 2 1 2 3 1 Panda M ’ , Murthy TVR , Samal RN , Lele N , Patnaik AK and Mohan PK 1Chilika Development Authority, Govt. of Odisha, India 2Space Application Center (SAC/ISRO), Ahmadabad, Govt. of India 3Principal Chief Conservator of Forest (PD OFSDP), Govt. of Odisha, India 4Post Graduate Department of Botany, Utkal University, Odisha Panda M, Murthy TVR, Samal RN, Lele N, Patnaik AK, Mohan PK 2017 – A comparative study of manglicolous lichens and their distribution inside Bhitarkanika National Park (Odisha), India. Studies in Fungi 2(1), 1–13, Doi 10.5943/sif/2/1/1 Abstract The manglicolous lichens are a specific group of lichens which occur in association with mangrove plants. Mangrove ecosystems have limited accessibility and the lichen study in mangrove forests are less studied and reported. The present study is the first-time report on lichen diversity, their distribution and its associated host mangrove species at eight different sites within the mangrove forests of Bhitarkanika Wildlife Sanctuary and National Park (Odisha), India. The study recorded a total of 49 lichen species which belongs to 26 genera and 14 families. The comparison of growth forms showed presence of 28 species of crustose, 18 species of foliose and three species of fruticose type of lichens from the study sites. The analysis of host mangrove species showed Excoecaria agallocha as the most preferable mangrove species as it housed 38 lichen species on its surface (i.e., 45% crustose, 47% foliose, and 8% fruticose). -
Corallinales, Rhodophyta) Based on Molecular and Morphological Data: a Reappraisal of Jania1
J. Phycol. 43, 1310–1319 (2007) Ó 2007 Phycological Society of America DOI: 10.1111/j.1529-8817.2007.00410.x PHYLOGENETIC RELATIONSHIPS WITHIN THE TRIBE JANIEAE (CORALLINALES, RHODOPHYTA) BASED ON MOLECULAR AND MORPHOLOGICAL DATA: A REAPPRAISAL OF JANIA1 Ji Hee Kim Korea Polar Research Institute, KORDI, 7-50 Songdo-dong, Incheon 408-840, Korea Michael D. Guiry Martin Ryan Institute, The National University of Ireland, Galway, Ireland Jung Hyun Oak Department of Biology, Gyeongsang National University, Jinju 660-701, Korea Do-Sung Choi Department of Science Education, Gwangju National University of Education, Gwangju 500-703, Korea Sung-Ho Kang, Hosung Chung Korea Polar Research Institute, KORDI, 7-50 Songdo-dong, Incheon 408-840, Korea and Han-Gu Choi2 Korea Polar Research Institute, KORDI, 7-50 Songdo-dong, Incheon 408-840, Korea Institute of Basic Sciences, Kongju National University, Kongju 314-701, Korea Generic boundaries among the genera Cheilosporum, Key index words: Corallinales; Jania; Janieae; Haliptilon,andJania—currently referred to the tribe morphology; nuclear SSU rDNA; phylogeny; Janieae (Corallinaceae, Corallinales, Rhodophyta)— Rhodophyta; systematics were reassessed. Phylogenetic relationships among Abbreviations: bp, base pair; GTR, general time 42 corallinoidean taxa were determined based on 26 reversible; TBR, tree bisection reconnection anatomical characters and nuclear SSU rDNA sequence data for 11 species (with two duplicate plants) referred to the tribe Corallineae and 15 species referred to the tribe Janieae (two species All members of the subfamily Corallinoideae of Cheilosporum, seven of Haliptilon, and six of (Aresch.) Foslie are constructed of uncalcified geni- Jania, with five duplicate plants). Results from our cula and calcified intergenicula and form branched approach were consistent with the hypothesis that fronds. -
Methods for Monitoring Corals and Crustose Coralline Algae to Quantify In-Situ Calcification Rates
Methods for Monitoring Corals and Crustose Coralline Algae to Quantify In-Situ Calcification Rates Open-File Report 2013–1159 U.S. Department of the Interior U.S. Geological Survey Cover photograph: Calcification-monitoring station, Molasses Reef, Florida Keys National Marine Sanctuary. Photograph by Ilsa Kuffner, November 2012. Methods for Monitoring Corals and Crustose Coralline Algae to Quantify In-Situ Calcification Rates By Jennifer M. Morrison, Ilsa B. Kuffner, and T. Don Hickey Open-File Report 2013–1159 U.S. Department of the Interior U.S. Geological Survey U.S. Department of the Interior SALLY JEWELL, Secretary U.S. Geological Survey Suzette M. Kimball, Acting Director U.S. Geological Survey, Reston, Virginia: 2013 For more information on the USGS—the Federal source for science about the Earth, its natural and living resources, natural hazards, and the environment, visit http://www.usgs.gov or call 1–888–ASK–USGS. For an overview of USGS information products, including maps, imagery, and publications, visit http://www.usgs.gov/pubprod To order this and other USGS information products, visit http://store.usgs.gov Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. Although this information product, for the most part, is in the public domain, it also may contain copyrighted materials as noted in the text. Permission to reproduce copyrighted items must be secured from the copyright owner. Suggested citation: Morrison, J.M., Kuffner, I.B., and Hickey, T.D., 2013, Methods for monitoring corals and crustose coralline algae to quantify in-situ calcification rates: U.S. -
Abstract Book
Abstract book VI International Rhodolith Workshop Roscoff, France 25-29 June 2018 Table of contents Taxonomy 6 Molecular systematics: toward understanding the diversity of Corallinophyci- dae, Viviana Pena...................................7 Simplified coralline specimens' DNA preparation, mini barcoding & HRM analysis targeting a short psbA section, Marc Angl`esD'auriac [et al.]...........8 Reassessment of Lithophyllum kotschyanum and L. okamurae in the North-Western Pacific Ocean, Aki Kato [et al.]............................9 Phymatolithopsis gen. nov. (Hapalidiaceae, Rhodophyta) based on molecular and morphological evidence, So Young Jeong [et al.]................ 10 Morpho-anatomical descriptions and DNA sequencing of the species of the genus Porolithon occurring in the Great Barrier Reef, Alexandra Ord´o~nez[et al.].... 11 Ecophysiology 12 How do rhodoliths get their energy?, Laurie Hofmann............... 13 Effect of seawater carbonate chemistry and other environmental drivers on the calcification physiology of two rhodoliths, Steeve Comeau [et al.]......... 14 Short- and long-term effects of high CO2 on the photosynthesis and calcification of the free-living coralline algae Phymatolithon lusitanicum, Jo~aoSilva [et al.].. 15 Physiological responses of tropical (Lithophyllum pygmaeum) and temperate (Coral- lina officinalis) branching coralline algae to future climate change conditions, Bon- nie Lewis [et al.].................................... 16 Role of evolutionary history in the responses of tropical crustose coralline algae to ocean acidification, Guillermo Diaz-Pulido [et al.]................ 17 1 Coralline algal recruits gain tolerance to ocean acidification over successive gen- erations of exposure, Christopher E. Cornwall [et al.]................ 18 Rhodolith communities in a changing ocean: species-specific responses of Brazil- ian subtropical rhodoliths to global and local stressors, Nadine Schubert [et al.]. 19 Maerl bed community physiology is impacted by elevated CO2, Heidi Burdett [et al.]...........................................